BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2829.p (542 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane pr... 672 0.0 ref|YP_002908812.1| methyl-accepting chemotaxis sensory transduc... 416 e-114 ref|YP_002909140.1| methyl-accepting chemotaxis sensory transduc... 416 e-114 ref|YP_004348241.1| methyl-accepting chemotaxis sensory transduc... 410 e-112 ref|YP_004362535.1| Methyl-accepting chemotaxis sensory transduc... 409 e-112 >ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62973.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 447/542 (82%), Positives = 494/542 (91%) Query: 1 MNKLKVSTRLALGFAGVIVLLLVISLVGMWGLSTVKSNLSNIVANNQQGGLADVMNNSVR 60 MNKLKVSTRLALGFA V+VLL+VISLVG+WG++TVK NLS+IVANNQQGGLADVMNNSVR Sbjct: 1 MNKLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIVANNQQGGLADVMNNSVR 60 Query: 61 IRALAIRNIALFQDPALVSAEIERIKVQEKSYQEARDKLRKLFDAPDTSRKEREFFDQIA 120 IRALAIRNIALFQ+PAL++ EIERIKVQEK+YQ+AR+KL K+FD PDT+R+E E FD IA Sbjct: 61 IRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFDQPDTTRREHELFDLIA 120 Query: 121 QNAADTEPLLKQAVTLAQENKTTDLINLLVQKIRPVQAKWLDNLDALGRLEDDLNDQAAA 180 QNAADTEPL+ QAVTLAQ++K+ +LI+LL QKIRPVQAKWLDNLD LGR ED+LN+QA+A Sbjct: 121 QNAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQASA 180 Query: 181 DAETTYQRIATTIWTLVAGSVLLALGAAVLIVRSVLRQLGGEPADAQVLAAQIAQGNLAV 240 A+TTY+ I TT WTLVAGSVLLA+ AA LIVRSVL QLGGEPA AQ LAAQIAQGNLAV Sbjct: 181 AADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAV 240 Query: 241 SIPLAKGDQHSLMASLDNMRAQLTSIVDGIKRSAESISTAAGQIAVGNLDLSRRTEEQAA 300 SIPLAKGDQHSLMASL+NMRAQLT IVDGIK SAESISTAA QIAVGNLDLSRRTEEQAA Sbjct: 241 SIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAA 300 Query: 301 SLEETASSMEEITSTVEQNTQNTQQANKLAADASGVAVKGGEMVAAVVDTMNAIEQSSHK 360 SLEETASSMEEITSTVEQNTQN Q ++LA AS A KGGE+V VV TM I QS++K Sbjct: 301 SLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYK 360 Query: 361 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIRGL 420 I +II ++GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAS+AKEIRGL Sbjct: 361 ITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGL 420 Query: 421 IESSVEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAISQM 480 IESSV+HVEAGQKLVDEAG TMD+VV+SIQQVNDLMSEITAAS+EQSSGISQINIAISQM Sbjct: 421 IESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQM 480 Query: 481 DEVTQQNAALVEESASAAQSMAQQADSLRDAVSVFRLEQAQPAVAPARETVMHPRMGLLS 540 DEVTQQNAALVEESASAAQSMAQQA+SLRDAV+VFR+EQ QPAVA RE V+HP MGLLS Sbjct: 481 DEVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRIEQPQPAVAYPREQVIHPAMGLLS 540 Query: 541 AA 542 AA Sbjct: 541 AA 542 >ref|YP_002908812.1| methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] gb|ACR31577.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] Length = 573 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 287/540 (53%), Positives = 381/540 (70%), Gaps = 5/540 (0%) Query: 1 MNKLKVSTRLALGFAGVIVLLLVISLVGMWGLSTVKSNLSNIV-ANNQQGGLADVMNNSV 59 M + VSTRL GF + LLL ++ +G +GLS + L +I NN + LA+ + S+ Sbjct: 1 MKNMTVSTRLIAGFGLLTALLLAVAAIGFYGLSQLNGRLDDIARVNNTEAQLANQLRASI 60 Query: 60 RIRALAIRNIALFQDPALVSAEIERIKVQEKSYQEARDKLRKLF-DAPDTSRKEREFFDQ 118 + RA+A+RN+AL D ++ E ERI QE+ Y +A KL ++F + P T+ +E+ Q Sbjct: 61 QDRAVAVRNLALLSDAQDMAKEAERISKQEQIYADAYQKLSQMFANGPGTTEREKTLIAQ 120 Query: 119 IAQNAADTEPLLKQAVTLAQENKTTDLINLLVQKIRPVQAKWLDNLDALGRLEDDLNDQA 178 + Q+ A T P L+QA+ L N L++ +RP+Q WL L ED LN QA Sbjct: 121 LKQDEAMTLPALRQAIQLGLSNDMAGATRELLRSVRPLQQTWLARSVELADFEDQLNGQA 180 Query: 179 AADAETTYQRIATTIWTLVAGSVLLALGAAVLIVRSVLRQLGGEPADAQVLAAQIAQGNL 238 A + Y + I +V S+L+A A+LI RS+LRQLGGEP AQ +AA+IA GNL Sbjct: 181 QRGAASLYSSVRELIGAIVTASLLVAAVTAILITRSILRQLGGEPVFAQSVAAEIANGNL 240 Query: 239 AVSIPLAKGDQHSLMASLDNMRAQLTSIVDGIKRSAESISTAAGQIAVGNLDLSRRTEEQ 298 V + L GD SLMASL++MRA+LTSIV GIK SAESIS AA ++A GN+DLS+RTEEQ Sbjct: 241 MVDLHLKPGDSTSLMASLESMRARLTSIVHGIKTSAESISVAANEVAQGNVDLSQRTEEQ 300 Query: 299 AASLEETASSMEEITSTVEQNTQNTQQANKLAADASGVAVKGGEMVAAVVDTMNAIEQSS 358 AASLEETA+SMEE+TSTV+ NT N +Q + LA AS A GG++V V+ TM+ I SS Sbjct: 301 AASLEETAASMEELTSTVKHNTDNARQGSTLAVTASRTATSGGDVVQQVMGTMDDITSSS 360 Query: 359 HKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIR 418 K+ +II VI+GIAFQTNILALNAAVE+ARAGEQGRGFAVVA EVRTLAQRSA AAKEI+ Sbjct: 361 RKVAEIISVIEGIAFQTNILALNAAVESARAGEQGRGFAVVAGEVRTLAQRSAVAAKEIK 420 Query: 419 GLIESSVEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAIS 478 LIE+SV HV AG +LV AG TMD++V+S+++V+D+M EI +AS+EQS+GI Q+N+A++ Sbjct: 421 ELIETSVSHVAAGSQLVAGAGTTMDEIVRSVKRVSDIMGEIASASAEQSTGIEQVNVAVA 480 Query: 479 QMDEVTQQNAALVEESASAAQSMAQQADSLRDAVSVFRLE---QAQPAVAPARETVMHPR 535 QMDEVTQQNAALVE++ +AAQSMA QA++LR VS+FR++ Q +PA A R+ + P+ Sbjct: 481 QMDEVTQQNAALVEQATAAAQSMADQAENLRATVSIFRVDARVQTEPAAAVKRQVSVAPK 540 >ref|YP_002909140.1| methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] gb|ACR31905.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] Length = 573 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 294/540 (54%), Positives = 380/540 (70%), Gaps = 5/540 (0%) Query: 1 MNKLKVSTRLALGFAGVIVLLLVISLVGMWGLSTVKSNLSNIV-ANNQQGGLADVMNNSV 59 M + VSTRL GF + LLL ++ +G +GLS + L +I NN + LA+ + +S+ Sbjct: 1 MKNMTVSTRLIAGFGLLTALLLAVAAIGFYGLSQLNGTLDDIARVNNTETKLANRLRSSI 60 Query: 60 RIRALAIRNIALFQDPALVSAEIERIKVQEKSYQEARDKLRKLF-DAPDTSRKEREFFDQ 118 + RA+A+RN+AL D ++ E ERI QE+ Y +A KL ++F D P T+ +E+ Q Sbjct: 61 QDRAIAVRNLALLSDAQDMAKEAERISKQEQIYADAYQKLSQMFADEPGTTEREKTLLAQ 120 Query: 119 IAQNAADTEPLLKQAVTLAQENKTTDLINLLVQKIRPVQAKWLDNLDALGRLEDDLNDQA 178 + Q+ A P L++A L N L+Q RP Q KWL L ED LNDQA Sbjct: 121 LKQDEAAALPPLRKAAQLGLSNDRAGATQELLQNARPPQRKWLARAIELADFEDQLNDQA 180 Query: 179 AADAETTYQRIATTIWTLVAGSVLLALGAAVLIVRSVLRQLGGEPADAQVLAAQIAQGNL 238 A + Y + I +VA S+L+A AVLI RS+LRQLGGEP AQ +AA+IA GNL Sbjct: 181 QGSAVSLYSSVRVLIAAIVAASLLVAAVTAVLITRSILRQLGGEPGLAQSVAAEIANGNL 240 Query: 239 AVSIPLAKGDQHSLMASLDNMRAQLTSIVDGIKRSAESISTAAGQIAVGNLDLSRRTEEQ 298 V + L GD SLMASL+ MRA+LTSIV GIK SAESIS AA Q+A GN+DLS+RTEEQ Sbjct: 241 MVDLHLKPGDSTSLMASLEAMRARLTSIVHGIKTSAESISVAANQVAQGNVDLSQRTEEQ 300 Query: 299 AASLEETASSMEEITSTVEQNTQNTQQANKLAADASGVAVKGGEMVAAVVDTMNAIEQSS 358 AASLEETA+SMEE+TSTV+ NT N +Q + LA AS A GG++V VV TM+ I SS Sbjct: 301 AASLEETAASMEELTSTVKHNTDNARQGSTLAVTASQTASSGGDVVRQVVGTMDDIASSS 360 Query: 359 HKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIR 418 K+ +II VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRTLAQRSA AAKEI+ Sbjct: 361 RKVAEIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAVAAKEIK 420 Query: 419 GLIESSVEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAIS 478 LIE+SV HV AG +LV AG TMD++V+S+++V+D+M EI +AS+EQS+GI Q+N+A++ Sbjct: 421 ELIETSVSHVAAGSQLVAGAGTTMDEIVRSVKRVSDIMGEIASASAEQSTGIEQVNVAVA 480 Query: 479 QMDEVTQQNAALVEESASAAQSMAQQADSLRDAVSVFRLE---QAQPAVAPARETVMHPR 535 QMDEVTQQNAALVE++ +AAQSMA QA++LR VS+FR++ Q +PA A R+ + P+ Sbjct: 481 QMDEVTQQNAALVEQATAAAQSMADQAENLRATVSIFRVDARAQTEPAAAVKRQVSVAPK 540 >ref|YP_004348241.1| methyl-accepting chemotaxis sensory transducer [Burkholderia gladioli BSR3] gb|AEA62729.1| methyl-accepting chemotaxis sensory transducer [Burkholderia gladioli BSR3] Length = 563 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 289/536 (53%), Positives = 378/536 (70%), Gaps = 5/536 (0%) Query: 1 MNKLKVSTRLALGFAGVIVLLLVISLVGMWGLSTVKSNLSNIV-ANNQQGGLADVMNNSV 59 M +KVS+RL +GF + +LLL ++ +GL + S L +I NN + LA+ + S+ Sbjct: 1 MKNMKVSSRLIIGFGLLTILLLAVAAGAFYGLGQLNSQLDSIARVNNTEARLANQLRASI 60 Query: 60 RIRALAIRNIALFQDPALVSAEIERIKVQEKSYQEARDKLRKLF-DAPDTSRKEREFFDQ 118 + RA+A+RN+AL DP ++ E +RI QE+ Y +A +L ++F D T+ +ER Sbjct: 61 QDRAIAVRNLALVTDPQDMAREADRITQQERIYADAYQQLSRMFTDEAGTTERERTLLAA 120 Query: 119 IAQNAADTEPLLKQAVTLAQENKTTDLINLLVQKIRPVQAKWLDNLDALGRLEDDLNDQA 178 + Q+ A P +++V LA N L+Q RP Q WL L ED LN+QA Sbjct: 121 LKQDEAAAMPPFRKSVQLALNNDAAAATRELLQNARPPQRIWLARAVELANFEDQLNEQA 180 Query: 179 AADAETTYQRIATTIWTLVAGSVLLALGAAVLIVRSVLRQLGGEPADAQVLAAQIAQGNL 238 +A TY + I + + ++L+A+G +LI RSVLRQLGGEP+ AQ AAQIA GNL Sbjct: 181 QREAVATYSNVRALIAVIASSALLVAVGTTILIARSVLRQLGGEPSMAQYAAAQIADGNL 240 Query: 239 AVSIPLAKGDQHSLMASLDNMRAQLTSIVDGIKRSAESISTAAGQIAVGNLDLSRRTEEQ 298 + +P+ +GD SLMASL+ MRA+L SIV GIK SAESIS AAG++A GN+DLS+RTEEQ Sbjct: 241 MIDLPVTRGDSSSLMASLETMRAKLASIVQGIKTSAESISIAAGEVAQGNVDLSQRTEEQ 300 Query: 299 AASLEETASSMEEITSTVEQNTQNTQQANKLAADASGVAVKGGEMVAAVVDTMNAIEQSS 358 AASLEETA+SMEE+TSTV+QNT N +Q + LAA AS A GGE+V VV TM I SS Sbjct: 301 AASLEETAASMEELTSTVKQNTDNARQGSTLAAAASQTASSGGEVVRQVVGTMADITSSS 360 Query: 359 HKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIR 418 K+ +II VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRTLAQRSA AAKEI+ Sbjct: 361 QKVSEIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAVAAKEIK 420 Query: 419 GLIESSVEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAIS 478 LIE+SV HV AG +LV AG TMD++V+S+++V D+M EI +AS+EQ +GI Q+N+A++ Sbjct: 421 ALIETSVSHVAAGSQLVSNAGATMDEIVRSVKRVTDIMGEIASASAEQGTGIEQVNVAVT 480 Query: 479 QMDEVTQQNAALVEESASAAQSMAQQADSLRDAVSVFRLEQAQPAVA---PARETV 531 QMDEVTQQNAALVE++ +AAQSMA QA++LR AVS+F++E A A P R TV Sbjct: 481 QMDEVTQQNAALVEQATAAAQSMADQAENLRAAVSIFKVESRPRAAAETTPVRATV 536 >ref|YP_004362535.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia gladioli BSR3] gb|AEA65505.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia gladioli BSR3] Length = 565 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 290/536 (54%), Positives = 379/536 (70%), Gaps = 5/536 (0%) Query: 1 MNKLKVSTRLALGFAGVIVLLLVISLVGMWGLSTVKSNLSNIV-ANNQQGGLADVMNNSV 59 M KVSTRL +GF + LLL ++ +G +GLS + L +I NN + LA+ + S+ Sbjct: 1 MKNTKVSTRLIIGFGLLTALLLAVAAIGFYGLSQLNGKLDSITRVNNTETKLANRLRASI 60 Query: 60 RIRALAIRNIALFQDPALVSAEIERIKVQEKSYQEARDKLRKLF-DAPDTSRKEREFFDQ 118 + RA+A+RN+AL D ++ E ERI QE+ Y +A KL ++F D P T+ +E+ Q Sbjct: 61 QDRAIAVRNLALLTDAQDMAKEAERISKQEQIYADAYQKLSQMFADEPGTTEREKTLVAQ 120 Query: 119 IAQNAADTEPLLKQAVTLAQENKTTDLINLLVQKIRPVQAKWLDNLDALGRLEDDLNDQA 178 I Q+ A P +++A L N L+Q +RP+Q +WL + L ED LNDQA Sbjct: 121 IMQDEAAVLPPMRKAAQLGLSNDMAGATRELLQNVRPLQQRWLTHSVELADFEDQLNDQA 180 Query: 179 AADAETTYQRIATTIWTLVAGSVLLALGAAVLIVRSVLRQLGGEPADAQVLAAQIAQGNL 238 DA +TY + I +V S+ LA A+LI RS+LR+LGGEP AQ +AA+IA GNL Sbjct: 181 QRDAVSTYSSVRILIAAIVVVSLQLAAATAILITRSILRELGGEPGLAQSVAAEIANGNL 240 Query: 239 AVSIPLAKGDQHSLMASLDNMRAQLTSIVDGIKRSAESISTAAGQIAVGNLDLSRRTEEQ 298 V + + D SLMASL++MR +LT IV GIK SAESIS AA ++A GN+DLS+RTEEQ Sbjct: 241 MVDLHVKPSDSSSLMASLESMRVRLTLIVQGIKTSAESISVAANEVAQGNVDLSQRTEEQ 300 Query: 299 AASLEETASSMEEITSTVEQNTQNTQQANKLAADASGVAVKGGEMVAAVVDTMNAIEQSS 358 AASLEET++SMEE+TSTV+ NT N +Q + LA AS A GG++V VV TM I SS Sbjct: 301 AASLEETSASMEELTSTVKHNTDNARQGSALAVTASQTASSGGDVVRQVVGTMEDITSSS 360 Query: 359 HKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIR 418 K+ +II VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRTLAQRSA AAKEI+ Sbjct: 361 RKVSEIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAVAAKEIK 420 Query: 419 GLIESSVEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAIS 478 LIE+S HV AG +LV AG TMD++V+S+Q+V+D+MSEI +AS+EQS+GI Q+N+A++ Sbjct: 421 ELIETSEAHVTAGSQLVAGAGATMDEIVRSVQRVSDIMSEIASASAEQSTGIEQVNVAVA 480 Query: 479 QMDEVTQQNAALVEESASAAQSMAQQADSLRDAVSVFRLE---QAQPAVAPARETV 531 QMDEVTQQNAALVE++ +AAQSMA QA+SLR AVS+F ++ Q + A+APAR V Sbjct: 481 QMDEVTQQNAALVEQATAAAQSMADQAESLRAAVSIFLVDARAQTETALAPARTRV 536