BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2828.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_785213.1| amino acid ABC transporter permease [Bordetella... 271 8e-71 ref|ZP_08404309.1| polar amino acid ABC transporter, inner membr... 260 9e-68 ref|ZP_02186324.1| ABC polar amino acid transporter, inner membr... 214 8e-54 ref|ZP_06896051.1| L-cystine ABC superfamily ATP binding cassett... 203 1e-50 ref|ZP_00961276.1| ABC polar amino acid transporter, inner membr... 201 8e-50 >ref|YP_785213.1| amino acid ABC transporter permease [Bordetella avium 197N] emb|CAJ48286.1| amino acid ABC transporter, permease protein [Bordetella avium 197N] Length = 222 Score = 271 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 154/219 (70%), Positives = 183/219 (83%) Query: 1 MDALLQNFFNLEVYRQVLPFLLGGLWTTVWLSLLVIPIGVASGLLLALLATQSRSRTVRI 60 M+ L+ +FFNLE+Y +V P LL GLWTT+WLS +VIP+G +GL LAL+ TQ+ R +R Sbjct: 1 MENLIHSFFNLEIYAEVFPHLLKGLWTTIWLSAIVIPLGALAGLALALVMTQAGPRALRW 60 Query: 61 AVAVYVDFFRSFPPLVLLILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIES 120 V Y+DFFR+FPPLVLLIL+YFG PFLG+EL KL AV + F+ NN+SY+AEV RAGIE+ Sbjct: 61 MVIGYIDFFRAFPPLVLLILVYFGWPFLGIELDKLTAVIVAFVLNNASYYAEVFRAGIEA 120 Query: 121 VPSGQMEAARSTGLSRTQALAWVIVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLR 180 VP GQMEAARSTGL R QAL +V++PQAVRN LPDLVGN IEV+KLTTIASVVALPELLR Sbjct: 121 VPKGQMEAARSTGLGRGQALGFVVIPQAVRNVLPDLVGNSIEVVKLTTIASVVALPELLR 180 Query: 181 VARDAQSLVYNPSPIVLAALLYLALLLPLVRWLSRLEHR 219 ARDAQ+LVY+PSP+VLAAL+YL LL PL RWL RLEHR Sbjct: 181 AARDAQALVYSPSPVVLAALMYLVLLWPLTRWLGRLEHR 219 >ref|ZP_08404309.1| polar amino acid ABC transporter, inner membrane subunit [Hylemonella gracilis ATCC 19624] gb|EGI78506.1| polar amino acid ABC transporter, inner membrane subunit [Hylemonella gracilis ATCC 19624] Length = 224 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 154/214 (71%), Positives = 178/214 (83%) Query: 1 MDALLQNFFNLEVYRQVLPFLLGGLWTTVWLSLLVIPIGVASGLLLALLATQSRSRTVRI 60 MDALLQNFFNL +Y QV P+LL GLWTTVWLS LVIP+G A GL LAL+ QS R R Sbjct: 1 MDALLQNFFNLPIYGQVFPYLLQGLWTTVWLSALVIPLGAAGGLGLALVLNQSTRRAPRW 60 Query: 61 AVAVYVDFFRSFPPLVLLILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIES 120 A ++DFFR+FPPLVLL+ +YFG PFLG E+PKL AV LGF+ NN++Y+AEV RAG+E+ Sbjct: 61 AAVAFIDFFRAFPPLVLLVFVYFGLPFLGWEIPKLGAVLLGFLLNNAAYYAEVFRAGLEA 120 Query: 121 VPSGQMEAARSTGLSRTQALAWVIVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLR 180 VPSGQMEAARSTGL+R QAL V+VPQAV+N LPDLV N IEV+KLTTIASVV LPELLR Sbjct: 121 VPSGQMEAARSTGLTRMQALRHVVVPQAVKNVLPDLVSNSIEVVKLTTIASVVGLPELLR 180 Query: 181 VARDAQSLVYNPSPIVLAALLYLALLLPLVRWLS 214 ARDAQSLVYNPSP+VLAAL+YL LL PL RW++ Sbjct: 181 AARDAQSLVYNPSPVVLAALMYLVLLWPLTRWMA 214 >ref|ZP_02186324.1| ABC polar amino acid transporter, inner membrane subunit [alpha proteobacterium BAL199] gb|EDP66561.1| ABC polar amino acid transporter, inner membrane subunit [alpha proteobacterium BAL199] Length = 221 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 127/219 (57%), Positives = 156/219 (71%), Gaps = 1/219 (0%) Query: 1 MDALLQNFFNLEVYRQVLPFLLGGLWTTVWLSLLVIPIGVASGLLLALLATQSRSRTVRI 60 MD L F N+E+ Q LP LL GL T L L V+P+G+ GLL+AL+ S+ R +R Sbjct: 1 MDMFLSQFLNVEIIGQALPLLLRGLGVTAQLCLAVVPLGLIGGLLIALVCL-SKHRAIRW 59 Query: 61 AVAVYVDFFRSFPPLVLLILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIES 120 V VDFFR+ PPLVLLI IY G PF+G+ +AV + F+ N SY+ E+ RAGI+S Sbjct: 60 PAFVLVDFFRAVPPLVLLIFIYAGLPFIGIRPSPFMAVCIAFLLNTGSYYGEIYRAGIDS 119 Query: 121 VPSGQMEAARSTGLSRTQALAWVIVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLR 180 + GQ EAARSTGL+ TQ L +V++PQAVRN LPDLV N +EV+KLT+IASVVALPELL Sbjct: 120 IGKGQWEAARSTGLTTTQTLVYVVIPQAVRNVLPDLVSNTVEVVKLTSIASVVALPELLY 179 Query: 181 VARDAQSLVYNPSPIVLAALLYLALLLPLVRWLSRLEHR 219 A A+SL YNPSPIV AA++YL LL P VR LSRLEHR Sbjct: 180 SADMARSLTYNPSPIVAAAVIYLILLWPCVRLLSRLEHR 218 >ref|ZP_06896051.1| L-cystine ABC superfamily ATP binding cassette transporter, membrane protein [Roseomonas cervicalis ATCC 49957] gb|EFH12244.1| L-cystine ABC superfamily ATP binding cassette transporter, membrane protein [Roseomonas cervicalis ATCC 49957] Length = 223 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 121/213 (56%), Positives = 153/213 (71%), Gaps = 1/213 (0%) Query: 8 FFNLEVYRQVLPFLLGGLWTTVWLSLLVIPIGVASGLLLALLATQSRSRTVRIAVAVYVD 67 F N E+ Q P L G T+ LS + +P+G+ G++LALL+T R++R A + D Sbjct: 8 FLNGEILGQAWPILWQGFLYTLGLSAMTVPLGLVGGVMLALLSTAG-PRSIRWLAAGWTD 66 Query: 68 FFRSFPPLVLLILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVPSGQME 127 FR+ PPLVLL+ +Y G PF GL++ AVA+GF N +Y+ EVLRAGIESVP GQME Sbjct: 67 LFRAIPPLVLLVFLYAGLPFAGLDVGAWGAVAIGFFLNTGAYYGEVLRAGIESVPRGQME 126 Query: 128 AARSTGLSRTQALAWVIVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARDAQS 187 AARSTGL+R QALA V++PQAVRN LPDLV N +EV+KLT+IASVVALPELL AR AQ+ Sbjct: 127 AARSTGLNRAQALAHVVLPQAVRNVLPDLVSNTLEVVKLTSIASVVALPELLFQARQAQN 186 Query: 188 LVYNPSPIVLAALLYLALLLPLVRWLSRLEHRG 220 YN +PIV AA+ Y LL PLVR +SRLE++ Sbjct: 187 ATYNATPIVAAAVAYFLLLWPLVRLISRLENKA 219 >ref|ZP_00961276.1| ABC polar amino acid transporter, inner membrane subunit [Roseovarius nubinhibens ISM] gb|EAP75516.1| ABC polar amino acid transporter, inner membrane subunit [Roseovarius nubinhibens ISM] Length = 221 Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 117/219 (53%), Positives = 157/219 (71%), Gaps = 1/219 (0%) Query: 1 MDALLQNFFNLEVYRQVLPFLLGGLWTTVWLSLLVIPIGVASGLLLALLATQSRSRTVRI 60 MD L++ FFN+E+ P +L GLW T+ + +VIP+G+ GL AL S++R +R Sbjct: 1 MDQLIEQFFNIEIMIAAWPTILRGLWMTLAICAVVIPMGLLGGLFAAL-GMLSQNRALRW 59 Query: 61 AVAVYVDFFRSFPPLVLLILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIES 120 A +VDFFR+ PPLVLLI +Y G PF GL L AVA+ F+ NNS+Y+ E+ RAGI S Sbjct: 60 ATVGFVDFFRAIPPLVLLIFVYSGLPFAGLRLSPFAAVAIAFLLNNSAYYGEIFRAGIGS 119 Query: 121 VPSGQMEAARSTGLSRTQALAWVIVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLR 180 V +GQ EAARSTGL +Q +A+V++PQAVRN LPDL+ N IEV+KLT++ASVV+L E+L Sbjct: 120 VGTGQTEAARSTGLGASQTMAYVVLPQAVRNVLPDLISNTIEVVKLTSLASVVSLAEMLY 179 Query: 181 VARDAQSLVYNPSPIVLAALLYLALLLPLVRWLSRLEHR 219 A A+S+ Y+ SP+VLAA +YL +L PLVR +SR E R Sbjct: 180 AADMARSVTYSASPLVLAAGIYLVILWPLVRLVSRFERR 218