BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2827.p         (223 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08404310.1| amino acid ABC transporter permease [Hylemone...   245   4e-63
ref|YP_785212.1| amino acid ABC transporter permease [Bordetella...   208   5e-52
ref|ZP_06896052.1| glutamine ABC superfamily ATP binding cassett...   203   2e-50
ref|ZP_02186325.1| ABC polar amino acid transporter, inner membr...   200   1e-49
ref|ZP_00961277.1| ABC polar amino acid transporter, inner membr...   189   3e-46

>ref|ZP_08404310.1| amino acid ABC transporter permease [Hylemonella gracilis ATCC
           19624]
 gb|EGI78507.1| amino acid ABC transporter permease [Hylemonella gracilis ATCC
           19624]
          Length = 226

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 159/215 (73%), Positives = 181/215 (84%)

Query: 4   FLFTFFNAEIAARYWPDILRGMGVTVLLSLAVIASGLLLGLSLAVLRATGKRGLVWLVVA 63
            +FTF N E+AARYWP IL+GMGVTV + LAV+ +GLLLGL LAVLRA   R L  +VVA
Sbjct: 8   LVFTFLNPEVAARYWPQILQGMGVTVAVGLAVVLTGLLLGLGLAVLRALHLRVLSLVVVA 67

Query: 64  FADVMRALPPLILIIVLFFAFPYIDLAMSSFTATWLALTLVLAAYAEESIWAGIASLPRG 123
           +ADVMR+LPPLIL+IV++F FP I L +S+F  TWLAL+LVLAAYAEESIWAGI SLP G
Sbjct: 68  YADVMRSLPPLILLIVVYFGFPSIGLPLSAFATTWLALSLVLAAYAEESIWAGIVSLPDG 127

Query: 124 QSEAARSTGLSWGQTMVAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNTAQA 183
           Q EAARSTGLSW Q M  V+LPQALR +VPPLTNRVISITKNTALGSVVALSEILN AQA
Sbjct: 128 QMEAARSTGLSWWQAMRWVVLPQALRRSVPPLTNRVISITKNTALGSVVALSEILNQAQA 187

Query: 184 ASSNAGNPTPLMLGAAAYLVIFIPVVLFARWLETR 218
           ASS +GNPTPL LGA AYLV+F+PVV+ ARW+E R
Sbjct: 188 ASSTSGNPTPLTLGALAYLVVFLPVVMLARWIERR 222


>ref|YP_785212.1| amino acid ABC transporter permease [Bordetella avium 197N]
 emb|CAJ48285.1| amino acid ABC transporter, permease protein [Bordetella avium
           197N]
          Length = 225

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 134/219 (61%), Positives = 171/219 (78%)

Query: 1   MEQFLFTFFNAEIAARYWPDILRGMGVTVLLSLAVIASGLLLGLSLAVLRATGKRGLVWL 60
           +  F+FTFFN ++A  Y P +  G  +T+   LAV+ +G LLG+ LA+LRA   R L   
Sbjct: 4   LHAFIFTFFNMKVAVEYAPALGMGALLTLGTGLAVVLAGTLLGVLLAILRALEVRPLSLA 63

Query: 61  VVAFADVMRALPPLILIIVLFFAFPYIDLAMSSFTATWLALTLVLAAYAEESIWAGIASL 120
           +V FADV+R+LPPL+L+IVL+F  P + L +S+F  TW++L+LVLAAYAEES+WAGIASL
Sbjct: 64  IVMFADVLRSLPPLVLLIVLYFGLPEVGLPLSAFLVTWISLSLVLAAYAEESVWAGIASL 123

Query: 121 PRGQSEAARSTGLSWGQTMVAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNT 180
           P GQ EAARS+GLSW Q M  VILPQA+R AVP LTNR+ISITKNTALGSVV+L E+LN 
Sbjct: 124 PPGQMEAARSSGLSWWQAMRWVILPQAVRRAVPTLTNRIISITKNTALGSVVSLHELLNA 183

Query: 181 AQAASSNAGNPTPLMLGAAAYLVIFIPVVLFARWLETRW 219
           AQ ASS +GNPTPLM+ A AY++IF+P+V+F+RWLE  W
Sbjct: 184 AQGASSLSGNPTPLMMAAIAYVIIFLPLVVFSRWLEKNW 222


>ref|ZP_06896052.1| glutamine ABC superfamily ATP binding cassette transporter,
           membrane protein [Roseomonas cervicalis ATCC 49957]
 gb|EFH12245.1| glutamine ABC superfamily ATP binding cassette transporter,
           membrane protein [Roseomonas cervicalis ATCC 49957]
          Length = 226

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 130/223 (58%), Positives = 173/223 (77%)

Query: 1   MEQFLFTFFNAEIAARYWPDILRGMGVTVLLSLAVIASGLLLGLSLAVLRATGKRGLVWL 60
           +E FLF+FFN ++ A Y P + +G+ +T+LL+L ++ SGL LGL+LAVLR+ G R L WL
Sbjct: 4   LENFLFSFFNLKVMATYLPLVAQGLALTILLALLIVVSGLALGLALAVLRSFGIRPLNWL 63

Query: 61  VVAFADVMRALPPLILIIVLFFAFPYIDLAMSSFTATWLALTLVLAAYAEESIWAGIASL 120
           ++   D+ RALPPL++I++LFF  P + L +S F ATWL+LTLVL A++EE  WAGI ++
Sbjct: 64  IIFTVDLFRALPPLVIIVLLFFGLPAMGLGLSGFAATWLSLTLVLMAFSEEIYWAGITAV 123

Query: 121 PRGQSEAARSTGLSWGQTMVAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNT 180
           P+GQ EAARSTGLS+  T+  V+LPQALR+ +PPLTNR I+ITK TALGSVV +SEIL  
Sbjct: 124 PKGQWEAARSTGLSFLATLRLVVLPQALRITIPPLTNRTIAITKGTALGSVVGVSEILGA 183

Query: 181 AQAASSNAGNPTPLMLGAAAYLVIFIPVVLFARWLETRWRWKR 223
           AQ+A S + NPTPL +GA AYL++FIPVV   RW+ETR+ WKR
Sbjct: 184 AQSAMSFSANPTPLTMGAIAYLILFIPVVALGRWIETRFAWKR 226


>ref|ZP_02186325.1| ABC polar amino acid transporter, inner membrane subunit [alpha
           proteobacterium BAL199]
 gb|EDP66562.1| ABC polar amino acid transporter, inner membrane subunit [alpha
           proteobacterium BAL199]
          Length = 227

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 124/220 (56%), Positives = 165/220 (75%)

Query: 4   FLFTFFNAEIAARYWPDILRGMGVTVLLSLAVIASGLLLGLSLAVLRATGKRGLVWLVVA 63
           FL  F N  +  +Y PDIL GM +TV ++LAV+A+G+ LGL LA +R+   R +  L+V 
Sbjct: 7   FLDAFLNRAVIDKYLPDILWGMIITVEVALAVVATGIALGLLLAAVRSFRVRPVNVLIVL 66

Query: 64  FADVMRALPPLILIIVLFFAFPYIDLAMSSFTATWLALTLVLAAYAEESIWAGIASLPRG 123
           F DV+RALPPL+LI++++F  P + + +S F   WL L+LVLAA+AEE  W+GI S+ +G
Sbjct: 67  FVDVLRALPPLVLILIIYFGLPSVGIRLSGFAVLWLVLSLVLAAFAEEIFWSGILSIRKG 126

Query: 124 QSEAARSTGLSWGQTMVAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNTAQA 183
           Q EAARSTGL++ QT+  VILPQA+RM VPPLTNR I+ITKNTALG+V+ + EIL  AQ 
Sbjct: 127 QWEAARSTGLTFLQTLTHVILPQAVRMTVPPLTNRTIAITKNTALGAVIGVPEILMQAQT 186

Query: 184 ASSNAGNPTPLMLGAAAYLVIFIPVVLFARWLETRWRWKR 223
           A S +GN TPL+LGA AY+V+F+PVV+  RWLETR+ W R
Sbjct: 187 AQSFSGNATPLLLGALAYIVLFVPVVVLGRWLETRFAWGR 226


>ref|ZP_00961277.1| ABC polar amino acid transporter, inner membrane subunit
           [Roseovarius nubinhibens ISM]
 gb|EAP75517.1| ABC polar amino acid transporter, inner membrane subunit
           [Roseovarius nubinhibens ISM]
          Length = 232

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/223 (52%), Positives = 164/223 (73%)

Query: 1   MEQFLFTFFNAEIAARYWPDILRGMGVTVLLSLAVIASGLLLGLSLAVLRATGKRGLVWL 60
           +E+F  TF N E+  +Y P IL G+GVTV LS+ +I  G+ LG  LA LRA     L +L
Sbjct: 9   LERFAQTFLNWEVLVKYAPSILAGVGVTVWLSVLIILVGMTLGTLLACLRAYRVGPLSFL 68

Query: 61  VVAFADVMRALPPLILIIVLFFAFPYIDLAMSSFTATWLALTLVLAAYAEESIWAGIASL 120
           +V FADV RALPPL++I+++FF  P   + +S+F   ++ LTL+LAA+AEE +WAGI S+
Sbjct: 69  IVVFADVFRALPPLVVILLVFFGLPNAGIYLSAFMVLFVVLTLILAAFAEEILWAGITSV 128

Query: 121 PRGQSEAARSTGLSWGQTMVAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNT 180
            +GQ EAARSTGL + QT+  VILPQA+R+A+PPLTNR I+ITK TALG+V+ + +ILN 
Sbjct: 129 DKGQWEAARSTGLGFTQTLGYVILPQAMRLAIPPLTNRAIAITKMTALGTVIGVPDILNQ 188

Query: 181 AQAASSNAGNPTPLMLGAAAYLVIFIPVVLFARWLETRWRWKR 223
           A  A S +GN +PL+L A AY+++F+P V+ +RWLE R+ WK+
Sbjct: 189 ATTAQSFSGNASPLLLAALAYVLLFLPFVIMSRWLERRYSWKK 231