BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2825.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08404312.1| amino acid ABC transporter solute-binding pro... 387 e-105 ref|YP_785210.1| amino acid ABC transporter solute-binding prote... 362 4e-98 ref|YP_001525400.1| amino acid ABC transporter substrate-binding... 285 8e-75 ref|ZP_02186328.1| ABC polar amino acid transporter, periplasmic... 271 9e-71 ref|YP_002520556.1| Extracellular solute-binding protein, family... 266 2e-69 >ref|ZP_08404312.1| amino acid ABC transporter solute-binding protein [Hylemonella gracilis ATCC 19624] gb|EGI78509.1| amino acid ABC transporter solute-binding protein [Hylemonella gracilis ATCC 19624] Length = 286 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 202/262 (77%), Positives = 222/262 (84%), Gaps = 1/262 (0%) Query: 28 SAGAMAQGGPLRTGVDATFAPHAMVKLGGGLQGFNIDLGEELARRLGRKIEIEGTEFSGL 87 + A AQ GPLRT VDATFAPHAM KLGGG QGFNIDLGEELA+RLGRKIEIE TEFSGL Sbjct: 25 AGSAWAQTGPLRTAVDATFAPHAMAKLGGGSQGFNIDLGEELAKRLGRKIEIEATEFSGL 84 Query: 88 VPGLNAKKYDFVLAPVTATPERAKAMLFTEGYLDTDYTFVIKKGAAPINALDDLKGKTIS 147 VPGLN+K+YDF+LAPVT TPERAKAMLFTEGYLDTDYTF+ +KG AP L+DLKGKTI+ Sbjct: 85 VPGLNSKRYDFLLAPVTVTPERAKAMLFTEGYLDTDYTFLGRKGTAP-TKLEDLKGKTIA 143 Query: 148 VNKGSAYELWARDNAPKYGFKYDVYGNNADAVQAVQSGRADANLAGSTVAAWAAKQNPAV 207 VNKGS YE WARDNA KY FK+DVYG+NADAVQAV + RAD NLAG+TV AWAAKQNPA+ Sbjct: 144 VNKGSNYEGWARDNAAKYDFKFDVYGSNADAVQAVLATRADYNLAGTTVVAWAAKQNPAL 203 Query: 208 QTTYTVKTGLVWALAFRLDDKVGRDAAGMALKCMKQDGTLGKIAQKWFGYTPAADATVVK 267 QT YT+KTGLVWAL FRLDD GR AA ALKCMKQDGTL K+A KWFGYTP ++ VK Sbjct: 204 QTGYTIKTGLVWALPFRLDDTAGRAAASNALKCMKQDGTLAKLALKWFGYTPGSEDAAVK 263 Query: 268 VGVGQGVPGLDGYDPTPVTLKC 289 + G GVPG+ GYDPTPVT KC Sbjct: 264 IAPGTGVPGMGGYDPTPVTPKC 285 >ref|YP_785210.1| amino acid ABC transporter solute-binding protein [Bordetella avium 197N] emb|CAJ48283.1| amino acid ABC transporter, solute-binding protein [Bordetella avium 197N] Length = 284 Score = 362 bits (929), Expect = 4e-98, Method: Composition-based stats. Identities = 173/257 (67%), Positives = 210/257 (81%) Query: 33 AQGGPLRTGVDATFAPHAMVKLGGGLQGFNIDLGEELARRLGRKIEIEGTEFSGLVPGLN 92 AQ PLRT VDATFAPHAM +L GG+QGFN+DLG E+A+RLGR + IE EFSGLVPGLN Sbjct: 27 AQTPPLRTAVDATFAPHAMTRLDGGVQGFNVDLGREIAKRLGRDLTIEAAEFSGLVPGLN 86 Query: 93 AKKYDFVLAPVTATPERAKAMLFTEGYLDTDYTFVIKKGAAPINALDDLKGKTISVNKGS 152 +++YDF++APVT TPERA+++LFTEGY DTDYTF+ +K A P+ +L+ LKGK ++VNKGS Sbjct: 87 SRRYDFLIAPVTVTPERARSLLFTEGYFDTDYTFLGRKDAPPLTSLEQLKGKVLAVNKGS 146 Query: 153 AYELWARDNAPKYGFKYDVYGNNADAVQAVQSGRADANLAGSTVAAWAAKQNPAVQTTYT 212 YE WARDNA KYGF+YDVYG NADAVQAVQ+GRAD NLAG+TVA WAAKQN + T+YT Sbjct: 147 NYESWARDNAGKYGFRYDVYGGNADAVQAVQAGRADYNLAGATVAGWAAKQNRRLATSYT 206 Query: 213 VKTGLVWALAFRLDDKVGRDAAGMALKCMKQDGTLGKIAQKWFGYTPAADATVVKVGVGQ 272 +KTGLVWALAFR DDK GR +KCMKQDGT+ K+A+ WFG+ P AD + V++ G Sbjct: 207 IKTGLVWALAFRKDDKEGRQQVSNVIKCMKQDGTIAKLAETWFGFAPDADNSAVRIAPGT 266 Query: 273 GVPGLDGYDPTPVTLKC 289 GVP +GYDPTPVT +C Sbjct: 267 GVPDTEGYDPTPVTPQC 283 >ref|YP_001525400.1| amino acid ABC transporter substrate-binding protein [Azorhizobium caulinodans ORS 571] dbj|BAF88482.1| amino acid ABC transporter solute-binding protein [Azorhizobium caulinodans ORS 571] Length = 316 Score = 285 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 146/263 (55%), Positives = 187/263 (71%) Query: 28 SAGAMAQGGPLRTGVDATFAPHAMVKLGGGLQGFNIDLGEELARRLGRKIEIEGTEFSGL 87 + A+AQ L+TGVD TFAPHAM L GG+QGFNIDL ELA+RLG K+ I+ T+FSGL Sbjct: 54 ATSALAQDAGLKTGVDGTFAPHAMPNLSGGVQGFNIDLANELAKRLGTKVTIDATQFSGL 113 Query: 88 VPGLNAKKYDFVLAPVTATPERAKAMLFTEGYLDTDYTFVIKKGAAPINALDDLKGKTIS 147 VPGL A YDF+ APVT +RA+ +LFTEGYL+TD+ FV+KK A I L+DLKGK I+ Sbjct: 114 VPGLQAGTYDFIAAPVTVNKDRAEQLLFTEGYLNTDFQFVVKKDAPEITKLEDLKGKVIA 173 Query: 148 VNKGSAYELWARDNAPKYGFKYDVYGNNADAVQAVQSGRADANLAGSTVAAWAAKQNPAV 207 VNKGSAY+ WARD A K G+ + YG N+DA+QAV +GRA AN+AG+TV+AWA K NPA+ Sbjct: 174 VNKGSAYDSWARDLADKIGWTVESYGTNSDAIQAVLTGRAYANVAGNTVSAWAVKNNPAI 233 Query: 208 QTTYTVKTGLVWALAFRLDDKVGRDAAGMALKCMKQDGTLGKIAQKWFGYTPAADATVVK 267 + +Y TGLVWA+ R D+ R+ A++CMK+DGTL + +KWFG PA + Sbjct: 234 KLSYLHSTGLVWAIPVRKDNVALRNKLDAAIECMKKDGTLASMHEKWFGTKPAPGSAAAT 293 Query: 268 VGVGQGVPGLDGYDPTPVTLKCN 290 + G GVP + GYD T L C+ Sbjct: 294 IFPGYGVPDMPGYDKTEHPLSCS 316 >ref|ZP_02186328.1| ABC polar amino acid transporter, periplasmic binding protein [alpha proteobacterium BAL199] gb|EDP66565.1| ABC polar amino acid transporter, periplasmic binding protein [alpha proteobacterium BAL199] Length = 276 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 143/264 (54%), Positives = 177/264 (67%) Query: 26 LLSAGAMAQGGPLRTGVDATFAPHAMVKLGGGLQGFNIDLGEELARRLGRKIEIEGTEFS 85 LL+AGA PL+TGVD TFAPHAM L GG++GFNIDL E+ +R R + IE T+FS Sbjct: 12 LLTAGAALAQEPLKTGVDGTFAPHAMPTLSGGVEGFNIDLANEIGKRSKRGVTIEATQFS 71 Query: 86 GLVPGLNAKKYDFVLAPVTATPERAKAMLFTEGYLDTDYTFVIKKGAAPINALDDLKGKT 145 GL+PGL A YDFV AP T T ERA+ +LFTEGYL+TD+ FVI I L +LKGK Sbjct: 72 GLLPGLQAGTYDFVAAPTTVTKERAENLLFTEGYLNTDFQFVILASTPDIKDLAELKGKV 131 Query: 146 ISVNKGSAYELWARDNAPKYGFKYDVYGNNADAVQAVQSGRADANLAGSTVAAWAAKQNP 205 I+VN+GSAY+ W R K G+ + +G N DAVQAV SGRA AN+AG+TV+AWA K+NP Sbjct: 132 IAVNRGSAYDSWVRGLTDKIGWTVETFGTNTDAVQAVLSGRAYANVAGNTVSAWAVKKNP 191 Query: 206 AVQTTYTVKTGLVWALAFRLDDKVGRDAAGMALKCMKQDGTLGKIAQKWFGYTPAADATV 265 ++ +Y TGLVWA R D+ R A++CMK DGT+ + +KWFG PAA + Sbjct: 192 QIKLSYLHSTGLVWAAPIRKDNAEMRKLVENAIECMKLDGTMAAMHEKWFGIKPAAGSAA 251 Query: 266 VKVGVGQGVPGLDGYDPTPVTLKC 289 V V G GVPG GYDPT T C Sbjct: 252 VTVYPGYGVPGTTGYDPTEHTPNC 275 >ref|YP_002520556.1| Extracellular solute-binding protein, family 3 precursor [Rhodobacter sphaeroides KD131] gb|ACM03483.1| Extracellular solute-binding protein, family 3 precursor [Rhodobacter sphaeroides KD131] Length = 308 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 131/264 (49%), Positives = 186/264 (70%), Gaps = 1/264 (0%) Query: 18 LAVLSASALLSAGAMAQ-GGPLRTGVDATFAPHAMVKLGGGLQGFNIDLGEELARRLGRK 76 LA ++A+ L + +A+ R +D TFAPHAM KL GG++GFN+DL + + RLG + Sbjct: 33 LAFMAATTLPAQSQVAEIRDSYRVALDGTFAPHAMPKLSGGVEGFNVDLAQLIGERLGSE 92 Query: 77 IEIEGTEFSGLVPGLNAKKYDFVLAPVTATPERAKAMLFTEGYLDTDYTFVIKKGAAPIN 136 + ++ +FSGL+P L A YDF++APVT ER++ +LFTEG++DT++ FV+ G+ + Sbjct: 93 MTVDAAQFSGLIPALQAGTYDFLVAPVTVNQERSENLLFTEGFMDTNFAFVVPAGSEKRD 152 Query: 137 ALDDLKGKTISVNKGSAYELWARDNAPKYGFKYDVYGNNADAVQAVQSGRADANLAGSTV 196 ++ KG TISVN+GSAY + D+A +YG+ +G N DAV+AV +GRADANL+G+TV Sbjct: 153 GIEAFKGMTISVNRGSAYHTYLDDHAAEYGWTVVPFGTNTDAVEAVATGRADANLSGATV 212 Query: 197 AAWAAKQNPAVQTTYTVKTGLVWALAFRLDDKVGRDAAGMALKCMKQDGTLGKIAQKWFG 256 AAWAA QNPAV +Y ++TGLVW LAFRLDD R+ + L+C+K DG+L +++KWFG Sbjct: 213 AAWAALQNPAVDLSYEIQTGLVWGLAFRLDDAATRNRVDLVLECLKTDGSLAALSEKWFG 272 Query: 257 YTPAADATVVKVGVGQGVPGLDGY 280 TPAA +T+V G GVPG GY Sbjct: 273 VTPAAGSTIVTPTPGFGVPGFPGY 296