BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2822.p (259 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776206.1| 3-oxoacyl-[acyl-carrier-protein] reductase [... 362 3e-98 ref|YP_001630573.1| short-chain dehydrogenase [Bordetella petrii... 360 1e-97 ref|ZP_08404314.1| short-chain dehydrogenase [Hylemonella gracil... 355 4e-96 ref|YP_001208262.1| putative short-chain reductase/dehydrogenase... 340 2e-91 ref|YP_533648.1| short-chain dehydrogenase/reductase SDR [Rhodop... 336 2e-90 >ref|YP_003776206.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] gb|ADJ64298.1| 3-oxoacyl-[acyl-carrier-protein] reductase protein [Herbaspirillum seropedicae SmR1] Length = 262 Score = 362 bits (929), Expect = 3e-98, Method: Composition-based stats. Identities = 213/262 (81%), Positives = 235/262 (89%), Gaps = 3/262 (1%) Query: 1 MDLGISGRRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRA---ATGA 57 MDL ++G+ ALVCASSKGLG ACA SLAREGV VTM ARG E LEAAAQ++RA ATGA Sbjct: 1 MDLRLNGKTALVCASSKGLGRACAHSLAREGVHVTMLARGREALEAAAQEIRAEVAATGA 60 Query: 58 SVTTVAGDITTPEGRALALAACPAPDILVTNAGGPKPGDFREWSREDWIAAIDANMLTPI 117 +TTV+ DITTPEGRALALAACPAPDILVTNAGGPKPGDFR+WSREDWIAA+DANMLTPI Sbjct: 61 IITTVSCDITTPEGRALALAACPAPDILVTNAGGPKPGDFRDWSREDWIAAVDANMLTPI 120 Query: 118 ELIKATVDGMMQRGFGRIVNITSGAVKAPIDILGLSNGARSGLTGFVAGLARTTVAHNVT 177 ELIKATVDGM+ R FGRIVNITS AV+APIDILGLSNGARSGLTGFVAGLAR TVAHNVT Sbjct: 121 ELIKATVDGMIARRFGRIVNITSSAVRAPIDILGLSNGARSGLTGFVAGLARKTVAHNVT 180 Query: 178 INNLLPGPFQTERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQPAEFGDACAWLCS 237 INNLLPGPF+T+RL TA+ +A+ SG+S +++LA RR NPA RFG PAEFGDACA+LCS Sbjct: 181 INNLLPGPFETDRLRATASGAAQESGRSVDEILAERRKLNPAGRFGDPAEFGDACAYLCS 240 Query: 238 AQAGFVTGQNLLMDGGAYPGTF 259 AQAGF+TGQNLLMDGGAYPGTF Sbjct: 241 AQAGFITGQNLLMDGGAYPGTF 262 >ref|YP_001630573.1| short-chain dehydrogenase [Bordetella petrii DSM 12804] emb|CAP42304.1| probable short-chain dehydrogenase [Bordetella petrii] Length = 259 Score = 360 bits (924), Expect = 1e-97, Method: Composition-based stats. Identities = 197/259 (76%), Positives = 219/259 (84%) Query: 1 MDLGISGRRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRAATGASVT 60 MDLGI G+RALVCASSKGLG ACA+SLAREG V M ARG E LEAAA +R TGA V Sbjct: 1 MDLGIEGKRALVCASSKGLGRACALSLAREGAQVVMLARGREALEAAADDIRQQTGARVV 60 Query: 61 TVAGDITTPEGRALALAACPAPDILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIELI 120 TVA DITTP GRA AL ACP PDILVTNAGGPKPGDFREWSREDWIAA+DANMLTPIELI Sbjct: 61 TVAADITTPAGRAAALQACPDPDILVTNAGGPKPGDFREWSREDWIAALDANMLTPIELI 120 Query: 121 KATVDGMMQRGFGRIVNITSGAVKAPIDILGLSNGARSGLTGFVAGLARTTVAHNVTINN 180 +AT+D M++R FGRIVNITS AVK PIDILGLSNGAR+GLTGFVAGLAR AHNVTINN Sbjct: 121 RATIDRMIERRFGRIVNITSAAVKMPIDILGLSNGARTGLTGFVAGLARQVAAHNVTINN 180 Query: 181 LLPGPFQTERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQPAEFGDACAWLCSAQA 240 LLPGPF T+RL TA +A+ +G+S E ++A R+A PARRFG PAEFGDACA+LCSAQA Sbjct: 181 LLPGPFATDRLTQTALKTAQNTGRSVEDIMAQRQAGIPARRFGDPAEFGDACAFLCSAQA 240 Query: 241 GFVTGQNLLMDGGAYPGTF 259 G++TGQNL++DGG YPGT Sbjct: 241 GYMTGQNLVLDGGLYPGTL 259 >ref|ZP_08404314.1| short-chain dehydrogenase [Hylemonella gracilis ATCC 19624] gb|EGI78511.1| short-chain dehydrogenase [Hylemonella gracilis ATCC 19624] Length = 259 Score = 355 bits (911), Expect = 4e-96, Method: Composition-based stats. Identities = 205/259 (79%), Positives = 221/259 (85%) Query: 1 MDLGISGRRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRAATGASVT 60 MDLGISGR ALVCASSKGLG ACAISLAREG VT+ ARG E L+A A +RA+TGA V+ Sbjct: 1 MDLGISGRSALVCASSKGLGRACAISLAREGARVTLVARGEEALQATADFIRASTGAPVS 60 Query: 61 TVAGDITTPEGRALALAACPAPDILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIELI 120 TVA D+TT GRA LAACP PDILVTNAGGPKPGDFR+W RE W+AA+DANMLTPI LI Sbjct: 61 TVAADVTTEAGRAAVLAACPEPDILVTNAGGPKPGDFRDWDREAWLAALDANMLTPIALI 120 Query: 121 KATVDGMMQRGFGRIVNITSGAVKAPIDILGLSNGARSGLTGFVAGLARTTVAHNVTINN 180 KATVD M+ R FGRIVNITSGAVKAPIDILGLSNGARSGLTGFVAGLAR TVAHNVTINN Sbjct: 121 KATVDTMIARRFGRIVNITSGAVKAPIDILGLSNGARSGLTGFVAGLARVTVAHNVTINN 180 Query: 181 LLPGPFQTERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQPAEFGDACAWLCSAQA 240 LLPGPF T+RL TAA A SGK+ E V+A R AANPARR G PAEFGDACA+LCSAQA Sbjct: 181 LLPGPFVTDRLKETAAQWAAKSGKTIEAVIAERGAANPARRLGDPAEFGDACAYLCSAQA 240 Query: 241 GFVTGQNLLMDGGAYPGTF 259 GF+TGQNLL+DGG YPGTF Sbjct: 241 GFITGQNLLLDGGHYPGTF 259 >ref|YP_001208262.1| putative short-chain reductase/dehydrogenase 3-oxoacyl-[acyl-carrier-protein] reductase [Bradyrhizobium sp. ORS 278] emb|CAL80047.1| putative short-chain reductase/dehydrogenase; putative 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) [Bradyrhizobium sp. ORS 278] Length = 260 Score = 340 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 188/260 (72%), Positives = 214/260 (82%), Gaps = 1/260 (0%) Query: 1 MDLGISGRRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRAAT-GASV 59 MDLGI GRRA+VCASSKGLG ACAI+LA EGV VT+TARGAE L A ++RAA G +V Sbjct: 1 MDLGIKGRRAIVCASSKGLGRACAIALANEGVDVTITARGAEALAKTAAEIRAANPGITV 60 Query: 60 TTVAGDITTPEGRALALAACPAPDILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIEL 119 T V GDITTPEGRA L ACP PDIL+ NAGGP PGDFR W+R+DWI A+DANMLTPIEL Sbjct: 61 TEVPGDITTPEGRAAVLKACPDPDILINNAGGPPPGDFRNWTRDDWIKALDANMLTPIEL 120 Query: 120 IKATVDGMMQRGFGRIVNITSGAVKAPIDILGLSNGARSGLTGFVAGLARTTVAHNVTIN 179 IKATVDGMM R FGRIVNITS AVKAPIDILGLSNGAR+GLTGFVAGL+R TV +NVTIN Sbjct: 121 IKATVDGMMARKFGRIVNITSAAVKAPIDILGLSNGARAGLTGFVAGLSRKTVINNVTIN 180 Query: 180 NLLPGPFQTERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQPAEFGDACAWLCSAQ 239 LLPGPF+T+RL +TA A G + EQ+LA R NPA RFG P EFG ACA+LC+A+ Sbjct: 181 ALLPGPFETDRLRSTAKGEAEKRGVTPEQILADRAKTNPAGRFGDPEEFGLACAFLCAAK 240 Query: 240 AGFVTGQNLLMDGGAYPGTF 259 AG++TGQN+L+DGGA+PGT Sbjct: 241 AGYITGQNILLDGGAFPGTL 260 >ref|YP_533648.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris BisB18] gb|ABD89329.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris BisB18] Length = 260 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 187/260 (71%), Positives = 215/260 (82%), Gaps = 1/260 (0%) Query: 1 MDLGISGRRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRAA-TGASV 59 MDLGI GRRALVCASSKGLG ACA +LA EGV VTMTARGAE L AA +R A G + Sbjct: 1 MDLGIKGRRALVCASSKGLGRACATALAAEGVHVTMTARGAEALAQAAAALRQAYPGVEI 60 Query: 60 TTVAGDITTPEGRALALAACPAPDILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIEL 119 T V GDITTPEGRA AL ACP+PDILV NAGGP PGDFR W+R+DWI A+DANMLTPIEL Sbjct: 61 TEVVGDITTPEGRAAALKACPSPDILVNNAGGPPPGDFRTWTRDDWIKALDANMLTPIEL 120 Query: 120 IKATVDGMMQRGFGRIVNITSGAVKAPIDILGLSNGARSGLTGFVAGLARTTVAHNVTIN 179 IKATVDGM++R +GRIVNITS AVKAPID+LGLSNGARSGLTGFVAGL+R TV HNVTIN Sbjct: 121 IKATVDGMIERKYGRIVNITSAAVKAPIDVLGLSNGARSGLTGFVAGLSRKTVRHNVTIN 180 Query: 180 NLLPGPFQTERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQPAEFGDACAWLCSAQ 239 LLPGPF T+RL T +A ++ SG E++++ R + NPA RFG P EFG ACA+LC ++ Sbjct: 181 ALLPGPFDTDRLRTVSAGQSKASGIPVEEIMSKRMSENPAGRFGDPEEFGLACAFLCGSK 240 Query: 240 AGFVTGQNLLMDGGAYPGTF 259 AGF+TGQN+L+DGGA+PGTF Sbjct: 241 AGFITGQNILLDGGAFPGTF 260