BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2820.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08404316.1| LysR family transcriptional regulator [Hylemo... 394 e-108 ref|YP_785208.1| LysR family transcriptional regulator [Bordetel... 347 1e-93 ref|NP_891252.1| LysR family transcriptional regulator [Bordetel... 326 3e-87 ref|NP_879481.1| LysR family transcriptional regulator [Bordetel... 325 8e-87 gb|EFV85934.1| LysR family Transcriptional regulator [Achromobac... 276 4e-72 >ref|ZP_08404316.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gb|EGI78513.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 309 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 201/299 (67%), Positives = 240/299 (80%), Gaps = 1/299 (0%) Query: 1 MALNLRQIEVFRAVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYAT 60 M++NLRQIEVFRAVM TGSISGASQLLFVSQPAVSRLLSHTE RVGFALFERIKGRLYAT Sbjct: 1 MSMNLRQIEVFRAVMITGSISGASQLLFVSQPAVSRLLSHTESRVGFALFERIKGRLYAT 60 Query: 61 PEAKKLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHP 120 PEAKKLF EVE VY V RVNELA +L E+R GILN+VSSPS+GQM+IPQA+A FR+ HP Sbjct: 61 PEAKKLFREVEQVYAGVLRVNELARELGEHREGILNVVSSPSVGQMVIPQAMATFRHSHP 120 Query: 121 EVKLTFHCLNYGYLKDRLLSRQADLGIIILPMEHPSLQVTPLCSNRLVCVLPYNHELTRR 180 +VKL F L Y L +RLL+ QADLG+ ILP+EHP+L TPL S RLVC+ PYNH L+RR Sbjct: 121 QVKLGFQFLGYAPLVERLLNHQADLGVTILPVEHPNLDTTPLGSGRLVCICPYNHPLSRR 180 Query: 181 GTLSLADLRPFPLISYNRDSPFGGIVGRFYQTEEEPLRPIMEVGSPQNACSLVQMGAGVA 240 L DL FPL++Y+R SPFG +V +++ + R +EVGSPQNAC+LVQ GAG+A Sbjct: 181 AILGADDLLAFPLVAYDRGSPFGVLVTGWFEAHGQGYRTAIEVGSPQNACALVQAGAGIA 240 Query: 241 LVDEFSVRSWGGTSQMVVRPVARAPILRANLVHVRTEPLSQLTQAFIAELQQLVRAQGY 299 LVDEFSVRSW SQ+VVRP+ AP L ANLVH R EPLSQ+ Q F+ L++L++++G+ Sbjct: 241 LVDEFSVRSWPA-SQLVVRPLHEAPALHANLVHSRFEPLSQIAQTFVGVLRELMQSEGF 298 >ref|YP_785208.1| LysR family transcriptional regulator [Bordetella avium 197N] emb|CAJ48281.1| LysR-family transcriptional regulator [Bordetella avium 197N] Length = 305 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 178/295 (60%), Positives = 224/295 (75%), Gaps = 1/295 (0%) Query: 1 MALNLRQIEVFRAVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYAT 60 M LN+RQIEVFRAVM TGSI GAS+LLFVSQPAVSRLLSHTEQR+GF LF+R +GRL T Sbjct: 1 MKLNIRQIEVFRAVMITGSIRGASELLFVSQPAVSRLLSHTEQRIGFPLFKRARGRLQPT 60 Query: 61 PEAKKLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHP 120 EA++LFHEVE VY+ V RVN++A +L E++ GILNIV+SPSIGQMLIP AIA +R HP Sbjct: 61 LEAQRLFHEVEIVYEGVTRVNDIARELFEHQEGILNIVASPSIGQMLIPAAIASYRQTHP 120 Query: 121 EVKLTFHCLNYGYLKDRLLSRQADLGIIILPMEHPSLQVTPLCSNRLVCVLPYNHELTRR 180 VKLTF L L +RLL RQADL I ILP++HP+L+ L S LVC+ PYNH L+RR Sbjct: 121 HVKLTFQYLTQAPLTERLLKRQADLAITILPIKHPNLEQQELASTSLVCICPYNHPLSRR 180 Query: 181 GTLSLADLRPFPLISYNRDSPFGGIVGRFYQTEEEPLRPIMEVGSPQNACSLVQMGAGVA 240 L + DL +P ISY R SPF +V ++ +PLR ++EVGSPQNAC+LVQ GAG+A Sbjct: 181 AVLQIKDLLAYPFISYERGSPFCRMVESMFEQSGQPLRSVVEVGSPQNACALVQAGAGIA 240 Query: 241 LVDEFSVRSWGGTSQMVVRPVARAPILRANLVHVRTEPLSQLTQAFIAELQQLVR 295 LVD+FS RSW S+ V RP+ +P+L A+L+ +R EP+SQ++Q+FI L+ +R Sbjct: 241 LVDQFSARSWSA-SRFVTRPIEASPLLHAHLIRLRDEPMSQISQSFIETLKAEIR 294 >ref|NP_891252.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE35082.1| LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 296 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 175/295 (59%), Positives = 216/295 (73%), Gaps = 1/295 (0%) Query: 1 MALNLRQIEVFRAVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYAT 60 M LNLRQIEVFRAVM TGSI GAS+LLFVSQPAVSRLLSH EQR+GFALFERI+GRLYAT Sbjct: 1 MKLNLRQIEVFRAVMITGSIRGASELLFVSQPAVSRLLSHMEQRIGFALFERIRGRLYAT 60 Query: 61 PEAKKLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHP 120 EA+KLFHEVE VY VQRVN++A DL E++ GILN+V+SPS+GQMLIP AIA +R HP Sbjct: 61 LEARKLFHEVEAVYAGVQRVNDMARDLFEHQEGILNLVASPSLGQMLIPAAIAQYRQAHP 120 Query: 121 EVKLTFHCLNYGYLKDRLLSRQADLGIIILPMEHPSLQVTPLCSNRLVCVLPYNHELTRR 180 +VKL+FH L L +RLL RQADL + ILP HP+L+ + + R+V + P H L R Sbjct: 121 QVKLSFHHLTQAPLTERLLKRQADLALTILPAGHPNLEQEEIGAARMVLICPPGHPLAGR 180 Query: 181 GTLSLADLRPFPLISYNRDSPFGGIVGRFYQTEEEPLRPIMEVGSPQNACSLVQMGAGVA 240 + L P+PL++Y R S FG + ++ + RP++EVGSPQNAC+LVQ GAGVA Sbjct: 181 EPVGAEALAPYPLVAYERGSAFGQKLQAWFDAQSVAARPVIEVGSPQNACALVQAGAGVA 240 Query: 241 LVDEFSVRSWGGTSQMVVRPVARAPILRANLVHVRTEPLSQLTQAFIAELQQLVR 295 LVDEFS RSW G V+RPV L A L+ +R EP S L Q+FI L++++R Sbjct: 241 LVDEFSARSWPGAG-FVMRPVRDLAPLTAYLLRLREEPASHLMQSFIETLRRVMR 294 >ref|NP_879481.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] emb|CAE44969.1| LysR-family transcriptional regulator [Bordetella pertussis Tohama I] gb|AEE66101.1| LysR family transcriptional regulator [Bordetella pertussis CS] Length = 296 Score = 325 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 174/295 (58%), Positives = 215/295 (72%), Gaps = 1/295 (0%) Query: 1 MALNLRQIEVFRAVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYAT 60 M LNLRQIEVFRAVM TGSI GAS+LLFVSQPAVSRLLSH EQR+GFALFERI+GRLYAT Sbjct: 1 MKLNLRQIEVFRAVMITGSIRGASELLFVSQPAVSRLLSHMEQRIGFALFERIRGRLYAT 60 Query: 61 PEAKKLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHP 120 EA+KLFHEVE VY VQRVN++A DL E++ GILN+V+SPS+GQMLIP AIA +R HP Sbjct: 61 LEARKLFHEVEAVYAGVQRVNDMARDLFEHQEGILNLVASPSLGQMLIPAAIAQYRQAHP 120 Query: 121 EVKLTFHCLNYGYLKDRLLSRQADLGIIILPMEHPSLQVTPLCSNRLVCVLPYNHELTRR 180 +VKL+FH L L +RLL RQADL + ILP HP+L+ + + R+V + P H L R Sbjct: 121 QVKLSFHHLTQAPLTERLLKRQADLALTILPAGHPNLEQEEIGAARMVLICPPGHPLAGR 180 Query: 181 GTLSLADLRPFPLISYNRDSPFGGIVGRFYQTEEEPLRPIMEVGSPQNACSLVQMGAGVA 240 + L P+PL++Y R S FG + ++ + RP++EVGSPQN C+LVQ GAGVA Sbjct: 181 EPVGAEALAPYPLVAYERGSAFGQKLQAWFDAQSVAARPVIEVGSPQNTCALVQAGAGVA 240 Query: 241 LVDEFSVRSWGGTSQMVVRPVARAPILRANLVHVRTEPLSQLTQAFIAELQQLVR 295 LVDEFS RSW G V+RPV L A L+ +R EP S L Q+FI L++++R Sbjct: 241 LVDEFSARSWPGAG-FVMRPVRDLAPLTAYLLRLREEPASHLMQSFIETLRRVMR 294 >gb|EFV85934.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 298 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 155/295 (52%), Positives = 202/295 (68%), Gaps = 5/295 (1%) Query: 1 MALNLRQIEVFRAVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYAT 60 M LNLRQIEVFRA+M +GSISGAS+LLFVSQPAVSRL+++TEQR+G LFERIKGRLY T Sbjct: 1 MKLNLRQIEVFRAIMLSGSISGASKLLFVSQPAVSRLIAYTEQRLGLMLFERIKGRLYPT 60 Query: 61 PEAKKLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHP 120 PEA++LF EV +YQ VQRVNE+A +L+ENR G L + SPS+GQ L+P+AIA FR HP Sbjct: 61 PEARRLFVEVTALYQNVQRVNEVADNLAENREGQLRLSCSPSLGQSLLPRAIARFRQLHP 120 Query: 121 EVKLTFHCLNYGYLKDRLLSRQADLGIIILPMEHPSLQVTPLCSNRLVCVLPYNHELTRR 180 E+++ L ++ LL++Q +LG+ +P+ HPSL PL NR+V VLP H L R Sbjct: 121 EIRIVLQTLIPAVMEQSLLTQQVELGVAYMPVNHPSLATRPLYENRIVAVLPAGHPLAAR 180 Query: 181 GTLSLADLRPFPLISYNRDSPFGGIVGRFYQTEEEPLRPIMEVGSPQNACSLVQMGAGVA 240 ++ A+L PLI Y+ D PFG +V + + E+ P +EV AC+LVQ GAGVA Sbjct: 181 RQVTAAELAREPLIGYSADIPFGMLVHKLFGAEDAQPEPRIEVQQAHVACALVQAGAGVA 240 Query: 241 LVDEFSVRS--WGGTSQMVVRPVARAPILRANLVHVRTEPLSQLTQAFIAELQQL 293 LVDE +V W SQ+V P+A N+ H++ +PLS+L QAFI L L Sbjct: 241 LVDEITVAGPIW---SQVVTVPIADTVSAPVNVFHLQLQPLSRLAQAFIDVLLAL 292