BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2817.p         (114 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EFV83112.1| hypothetical protein HMPREF0005_02297 [Achromobac...   124   5e-27
gb|EGP45760.1| putative anti-sigma factor antagonist [Achromobac...   121   3e-26
ref|YP_004418539.1| putative anti-sigma factor antagonist [Pusil...   110   7e-23
ref|NP_884498.1| putative anti-sigma factor antagonist [Bordetel...   107   7e-22
ref|NP_880870.1| putative anti-sigma factor antagonist [Bordetel...   105   2e-21

>gb|EFV83112.1| hypothetical protein HMPREF0005_02297 [Achromobacter xylosoxidans
           C54]
          Length = 111

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/107 (63%), Positives = 84/107 (78%)

Query: 1   MNITFEKSAEILLVSLEGRISSVNAGQAEADLMAQVARGESDMLLDMSRLDYISSAGLRV 60
           MN+  EK  E+L+VS EG+I+S NA   EADL++ V +GE   +LDMS L+YISSAGLRV
Sbjct: 1   MNLAIEKVGEVLVVSPEGQINSGNAAGIEADLLSHVEKGEHRFVLDMSNLNYISSAGLRV 60

Query: 61  VLLLAKKLKQSGGVLVLHGMQPQIREVFDISGFLNILTVTDTREQAL 107
           VL+LAK+LKQS G L L  MQP +REVFDISGFL ILTV DTR++A+
Sbjct: 61  VLVLAKRLKQSAGALALCAMQPHVREVFDISGFLAILTVVDTRQEAV 107


>gb|EGP45760.1| putative anti-sigma factor antagonist [Achromobacter xylosoxidans
           AXX-A]
          Length = 111

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/107 (62%), Positives = 82/107 (76%)

Query: 1   MNITFEKSAEILLVSLEGRISSVNAGQAEADLMAQVARGESDMLLDMSRLDYISSAGLRV 60
           MN+  EK  E+L+VS EG+I+S NA   EADL++ V +GE   +LDMS L+YISSAGLRV
Sbjct: 1   MNLAIEKVGEVLVVSPEGQINSGNAAGIEADLLSHVEKGERRFVLDMSNLNYISSAGLRV 60

Query: 61  VLLLAKKLKQSGGVLVLHGMQPQIREVFDISGFLNILTVTDTREQAL 107
           VL+LAK+LKQ  G L L  MQP +REVFDISGFL ILTV DTR+ A+
Sbjct: 61  VLVLAKRLKQGSGALALCAMQPHVREVFDISGFLAILTVVDTRQDAV 107


>ref|YP_004418539.1| putative anti-sigma factor antagonist [Pusillimonas sp. T7-7]
 gb|AEC21915.1| putative anti-sigma factor antagonist [Pusillimonas sp. T7-7]
          Length = 112

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 65/111 (58%), Positives = 82/111 (73%)

Query: 1   MNITFEKSAEILLVSLEGRISSVNAGQAEADLMAQVARGESDMLLDMSRLDYISSAGLRV 60
           M+++ EK  E+L+VS  G+I+S NA + E+ L+A V +GE   +LD+S LDYISSAGLRV
Sbjct: 1   MSLSSEKIGEVLVVSASGQINSANAAEVESALLAYVNQGERLCVLDLSGLDYISSAGLRV 60

Query: 61  VLLLAKKLKQSGGVLVLHGMQPQIREVFDISGFLNILTVTDTREQALVHFS 111
           VL+LAK LKQ  G LVL  +QPQ+ EVFDISGFL ILTV DTR  A+   S
Sbjct: 61  VLMLAKGLKQKAGQLVLCALQPQVHEVFDISGFLAILTVVDTRPAAVSQLS 111


>ref|NP_884498.1| putative anti-sigma factor antagonist [Bordetella parapertussis
           12822]
 emb|CAE37549.1| putative anti-sigma factor antagonist [Bordetella parapertussis]
          Length = 116

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/110 (53%), Positives = 80/110 (72%)

Query: 1   MNITFEKSAEILLVSLEGRISSVNAGQAEADLMAQVARGESDMLLDMSRLDYISSAGLRV 60
           M +T +K   +L+  L+G ++S NA Q EA+L AQV +GE  ++LD+ RLDYISSAGLRV
Sbjct: 1   MKLTMDKMDGMLIACLQGVVNSANAEQIEAELAAQVDKGECRVVLDLGRLDYISSAGLRV 60

Query: 61  VLLLAKKLKQSGGVLVLHGMQPQIREVFDISGFLNILTVTDTREQALVHF 110
           VLL+AK+L+Q  G LVL  ++P +REVF+ISGFL I  V ++RE A   F
Sbjct: 61  VLLVAKQLRQVQGELVLCELKPHVREVFEISGFLTIFPVANSREAAAAAF 110


>ref|NP_880870.1| putative anti-sigma factor antagonist [Bordetella pertussis Tohama
           I]
 emb|CAE42502.1| putative anti-sigma factor antagonist [Bordetella pertussis Tohama
           I]
 gb|AEE67482.1| putative anti-sigma factor antagonist [Bordetella pertussis CS]
          Length = 116

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/110 (53%), Positives = 80/110 (72%)

Query: 1   MNITFEKSAEILLVSLEGRISSVNAGQAEADLMAQVARGESDMLLDMSRLDYISSAGLRV 60
           M +T +K   +L+  L+G ++S NA Q EA+L AQV +GE  ++LD+ RLDYISSAGLRV
Sbjct: 1   MKLTMDKMDGMLIACLQGVVNSANAEQLEAELAAQVDKGERRVVLDLGRLDYISSAGLRV 60

Query: 61  VLLLAKKLKQSGGVLVLHGMQPQIREVFDISGFLNILTVTDTREQALVHF 110
           VLL+AK+L+Q  G LVL  ++P +REVF+ISGFL I  V ++RE A   F
Sbjct: 61  VLLVAKQLRQVQGELVLCELKPHVREVFEISGFLTIFPVANSREAAAAAF 110