BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2813.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00055980.2| COG0840: Methyl-accepting chemotaxis protein ... 70 5e-10 emb|CAM77150.1| Methyl-accepting chemotaxis protein [Magnetospir... 65 1e-08 ref|YP_001417421.1| hypothetical protein Xaut_2522 [Xanthobacter... 56 6e-06 ref|YP_003448954.1| hypothetical protein AZL_017720 [Azospirillu... 55 8e-06 ref|YP_422888.1| hypothetical protein amb3525 [Magnetospirillum ... 55 8e-06 >ref|ZP_00055980.2| COG0840: Methyl-accepting chemotaxis protein [Magnetospirillum magnetotacticum MS-1] Length = 265 Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 79/144 (54%), Gaps = 1/144 (0%) Query: 21 LLALVLLVGSVAGVLAWREALEQRSAVLREARFQFNLNTIKRQLESGLQVGLQLPEQTGM 80 L++++L V A+ + E + ++R+ F + TIK+++E L +G L + + Sbjct: 19 LVSILLFTLVVTAFFAYYK-FESVYSTQVQSRYSFVVFTIKKRVEDSLNLGFALRQLRQV 77 Query: 81 QHLIEQVRAYEVVIRSIDVFDAQGHIVFSTDGGGVGANIPVSWRQSCLSATAANWGAEDE 140 Q +IE+ ++ + I +++V+D +G ++F TD G +G + S ++ S ++G DE Sbjct: 78 QEIIEREKSRDSQILAVEVYDYRGEVLFDTDRGAIGTRVSDSLAEAIRSGMPQSFGVVDE 137 Query: 141 EGRLLCGSVITGFDQVAGGVALRY 164 + ++ ++ +V GGV LRY Sbjct: 138 DNLIVGLPLVNNLGKVEGGVVLRY 161 >emb|CAM77150.1| Methyl-accepting chemotaxis protein [Magnetospirillum gryphiswaldense MSR-1] Length = 259 Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 117/261 (44%), Gaps = 15/261 (5%) Query: 8 WMFTLTLNRFFVMLLALVLLVGSVAGVLAWREALEQRSAVLREARFQFNLNTIKRQLESG 67 W ++ + +L ++V ++ G +++ + + L +R+ F TIK+++E Sbjct: 3 WSLARKVSAALIAILVCTMMVTALFGFFKFQDVMSE----LVRSRYSFVAFTIKQKVEDS 58 Query: 68 LQVGLQLPEQTGMQHLIEQVRAYEVVIRSIDVFDAQGHIVFSTDGGGVGANIPVSWRQSC 127 L +G L + +Q IE +A + ++ I+++D++G I+F++D G +GA++P +W Sbjct: 59 LNLGFALRQLRQVQETIELEKARDEQVQGIEIYDSKGEILFNSDRGRIGASVPENWLLPL 118 Query: 128 LSATAANWGAEDEEGRLLCGSVITGFDQVAGGVALRY--GLPDRSSLLNQLTRYWPMLLG 185 + DE+ ++ ++ +V G V L Y G +R L L R + G Sbjct: 119 TLTNLQPFAFLDEDSNVVGLPLVNSLGKVEGAVVLLYPTGYVER-ELGPMLWRLAGEIAG 177 Query: 186 LGATLLCGGGLLAWLLLRPLERDLQAQTAA--LAGDGTAHNDALC------GPLADAIVQ 237 L ++A + L + R L A A LA G A D + G + + + Sbjct: 178 LVVVFSLLAVMVASIALGAVRRRLHAMEHALLLAPGGEAPLDDVAMLNEFDGHFGEFVAK 237 Query: 238 GHALQQALAQVDREADRLDNL 258 + + E +RLD L Sbjct: 238 TREAVEHIKASTDEVERLDRL 258 >ref|YP_001417421.1| hypothetical protein Xaut_2522 [Xanthobacter autotrophicus Py2] gb|ABS67764.1| hypothetical protein Xaut_2522 [Xanthobacter autotrophicus Py2] Length = 248 Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 19/220 (8%) Query: 48 LREARFQFNLNTIKRQLESGLQVGLQLPEQTGMQHLIEQVRAYEVVIRSIDVFDAQGHIV 107 + AR L T++ E+ L +GL L + + +Q IE+ +A + I +ID+F+A G + Sbjct: 37 IERARVANLLGTLRASTEANLSIGLLLDQISLLQPRIEREKASDPSILAIDIFNAAGRAI 96 Query: 108 FSTDGGGVGANIPVSWRQSCLSATAANWGAEDEEGRLLCGSVITGFDQVAGGVALRYGLP 167 +STD +G + W ++ A+ W E E G + G+ VAGG+++ Sbjct: 97 YSTDRSVIGEEVTPGWVRNL--ASEEVW-TEAERGDTVFGTRFENDLGVAGGISVTVSDE 153 Query: 168 DRSSLLNQL-----TRYWPMLLGLGATLLCGGGLLAWLLLRPLERDLQAQTAALAGDGTA 222 RSS ++L +R + L A++L RP +R L+G+G Sbjct: 154 ARSSRASRLGLDLVSRTAILTLAAALAASLAAVTFAYVLTRPFDR----VARILSGEGAT 209 Query: 223 HNDALCGP---LADAIVQGHALQQALAQVDREADRLDNLE 259 ND GP LAD V+ + + A +VDR +L L+ Sbjct: 210 SNDD--GPLTQLADETVK--SWRDAEDRVDRGLGQLGALD 245 >ref|YP_003448954.1| hypothetical protein AZL_017720 [Azospirillum sp. B510] dbj|BAI72410.1| hypothetical protein AZL_017720 [Azospirillum sp. B510] Length = 284 Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 13/189 (6%) Query: 21 LLALVLLVGSVAGVLAWREALEQRSAVLREARFQFNLNTIKRQLESGLQVGLQLPEQTGM 80 +A+ + V S++ V+ W +R ++ F L+ K LE+ L +GL L + + Sbjct: 16 FMAVAVFVASLSAVVLWTREQARRLDEAVTSQVDFVLSEAKASLETQLNLGLALGDLPQV 75 Query: 81 QHLIEQVRAYEVVIRSIDVFDAQGHIVFSTDGGGVGANIPVSWRQSCLSATAAN------ 134 L+ + R I+S+ V D G I+FST+ VG +PV A Sbjct: 76 DALLARARIALPGIQSVAVLDEDGIILFSTNAVEVGEELPVHHPAGPADGRADGRADGRD 135 Query: 135 --WGAEDEEGRLLCGSVITGFDQVAGGVALRYGLPDRSSLLNQLTRYWPMLLGLGATLLC 192 W E E R+ + T FD AG V +R +P S + + R++ + L +GA L+ Sbjct: 136 GFWSEERETERIYGVGLSTSFDTTAGSVLVR--MP--PSAMAEPMRHYVLTLSIGAVLIA 191 Query: 193 GGGLL-AWL 200 LL WL Sbjct: 192 LPLLLVGWL 200 >ref|YP_422888.1| hypothetical protein amb3525 [Magnetospirillum magneticum AMB-1] dbj|BAE52329.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 175 Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 62/110 (56%), Gaps = 1/110 (0%) Query: 21 LLALVLLVGSVAGVLAWREALEQRSAVLREARFQFNLNTIKRQLESGLQVGLQLPEQTGM 80 L++++L V A+ + SA + ++R+ F + TIK+++E L +G L + + Sbjct: 55 LVSILLFTLVVTAFFAYYKFESVYSAQV-QSRYSFVVFTIKKKVEDNLNLGFALRQLRQV 113 Query: 81 QHLIEQVRAYEVVIRSIDVFDAQGHIVFSTDGGGVGANIPVSWRQSCLSA 130 Q +IE+ + + I +++V+D +G ++F TD G +G + SW + +A Sbjct: 114 QEVIEREKMRDAQILAVEVYDYRGEVLFDTDRGAIGTRVSDSWPRPSAAA 163