BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2812.p (983 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00055976.1| COG2208: Serine phosphatase RsbU, regulator o... 294 5e-77 ref|YP_422883.1| Serine phosphatase RsbU, regulator of sigma sub... 294 5e-77 ref|YP_001527139.1| histidine kinase [Azorhizobium caulinodans O... 277 7e-72 emb|CAM77154.1| Stage II sporulation E [Magnetospirillum gryphis... 276 1e-71 ref|YP_003448952.1| sigma-B regulation protein [Azospirillum sp.... 275 3e-71 >ref|ZP_00055976.1| COG2208: Serine phosphatase RsbU, regulator of sigma subunit [Magnetospirillum magnetotacticum MS-1] Length = 895 Score = 294 bits (753), Expect = 5e-77, Method: Composition-based stats. Identities = 228/669 (34%), Positives = 344/669 (51%), Gaps = 52/669 (7%) Query: 342 LDEDRNQFDQDLAPLLTA-EAGPRLLRDKSPDDVLETV---IRHSTRPGLA-LAVLELDG 396 L E+ Q + +APLL A + + KSP + E + I +R G+A + ++ LDG Sbjct: 52 LVENTVQRLEAVAPLLAANQEMISAIARKSPSEAREAMAPTIAGLSRRGVARVEIVGLDG 111 Query: 397 SL-RAAAGQSREATTIPVLTLPLLRGATDGLYGIWQNGVRDYQSGAVRRIEIEGHALLLV 455 L ++ G E + T+ L+ G+ QN + + + + + V Sbjct: 112 DLLYSSQGSLLETPLVDAGTVRLIAETGKARTGVTQNSDKQFIAAITVPLVSLDKMVTGV 171 Query: 456 ATRPLEKSLGRLRERLLATRVAAGDDGASSLQVAVADLRGQPVLDAYASLTSLWRAHD-- 513 AT + LR L + + G D V + D G + D L LWR + Sbjct: 172 ATM-----VSDLRPPLEEFKASTGSD------VFLVDRAGH-MTDGTNDL--LWRVFESK 217 Query: 514 ------RSNFMRDGNQAAVLVSLALNAPSGHALGTLLAMLPQAPRLEPEEDLAILLWAAL 567 R RDG++ +V L+ +G L+++ + ++ ++ A+ Sbjct: 218 ISVRKSRLETWRDGSRFYSVVVFPLSDGESRVIGALVSVRDSTDTQARQHEVRVIAIGAV 277 Query: 568 AASALLALLLYV---RSPFVLLGQATRQLERLADGDT----DVQAPLQGVRQVRLWHGMM 620 +L L+++ R F L QA L L+ GDT DV+ + ++ G+ Sbjct: 278 GLFLVLVLVVFSVYLRRSFDPLDQAIAVLNALSRGDTSVMLDVRHDNDEIGRIASTVGVF 337 Query: 621 QRIAGKIDALETLRRSRERQGKRQARFIRRQMMQLAERLDEAARRGILEDLHRIEHGRRP 680 + A KID LE R + R+ Q FIR QM++L+E L++ AR +L+DL +IE Sbjct: 338 RENAIKIDMLEERRERQRRR---QELFIRLQMLRLSEMLEQDAREAVLDDLRQIEELSSR 394 Query: 681 DATSDSGTDERAGRIADEFGVLALGFQNLVSRVGEQYQELDRLVNQ-------LREALQA 733 D G+D G E VLA+ FQ + SR+ EQ++ L+ L+ + LREAL+ Sbjct: 395 STAGDEGSDGAKG----ELDVLAVAFQTMSSRIREQHERLESLITERTRDVEILREALRT 450 Query: 734 KTQFIALQQELEIASKMQLSILPRQFAANP---ALSLHAMMIPAKEVGGDFYDFFDLDAH 790 + Q AL+QEL+ A ++QLS LP+ F P +HA M+PAKEVGGDFYDFF +D H Sbjct: 451 RDQLAALRQELDFARELQLSSLPQVFPPFPDRGEFQIHASMVPAKEVGGDFYDFFFIDHH 510 Query: 791 RTALVIADVSGKGVPAAFFMAVSRTLLRAIAPYTSSAAACIARVNDLLAADNEEMMFVTL 850 VI D SGKGVPAA F+A++R+L++A+AP +SS C+A VN +LA DN + +F T Sbjct: 511 NLGFVIGDASGKGVPAAMFIAITRSLVKAVAPLSSSPGECLAFVNTMLARDNPQTLFATC 570 Query: 851 FYAILDTRDGSMHYINAGHNPPYLLRADGRAGHPPATRGIALAVETDMYFEQGTVQLAPG 910 FY +LDTR G + + NAGH PP +LR+DGR G+AL V D+ +E G L PG Sbjct: 571 FYGVLDTRSGEVSFCNAGHPPPMILRSDGRVEAIRDVSGVALGVMEDLEYETGCFVLEPG 630 Query: 911 DGLFLYTDGITEATDPDQQLFGEQRLIEELKQMTGRPVDQITRHVVERIKDFEAGGPQAD 970 + + LYTDG+TEA D L+ E RLI EL + R + + V+ ++ F PQ D Sbjct: 631 EVVHLYTDGVTEAQDSVDALYDEPRLIAELGRTEDRAPEAVIASVLRSVEAFVGNAPQFD 690 Query: 971 DITCMMVRY 979 DIT + +R+ Sbjct: 691 DITMLTLRF 699 >ref|YP_422883.1| Serine phosphatase RsbU, regulator of sigma subunit [Magnetospirillum magneticum AMB-1] dbj|BAE52324.1| Serine phosphatase RsbU, regulator of sigma subunit [Magnetospirillum magneticum AMB-1] Length = 899 Score = 294 bits (753), Expect = 5e-77, Method: Composition-based stats. Identities = 227/672 (33%), Positives = 342/672 (50%), Gaps = 51/672 (7%) Query: 338 WQAVLDEDRNQFDQDLAPLLTAEAGPRLLRDKSPDDVLETV---IRHSTRPGLA-LAVLE 393 W +++ + + LL + + KSP + E + I TR G+ + ++ Sbjct: 49 WDKLVENTVQRLEGATPLLLANQEMISAIARKSPSEAREAMTPTIAGLTRRGVGRVEIVG 108 Query: 394 LDGSL-RAAAGQSREATTIPVLTLPLLRGATDGLYGIWQNGVRDYQSGAVRRIEIEGHAL 452 LDG L ++ G E + T+ L+ G+ QN + + + + A+ Sbjct: 109 LDGDLLYSSQGSLLETPLVDAGTVRLIAETGKARTGVTQNSDKQFIAAITVPLAALDKAV 168 Query: 453 LLVATRPLEKSLGRLRERLLATRVAAGDDGASSLQVAVADLRGQPVLDAYASLTSLWRAH 512 + VAT + LR L + + G D V + D G + D L LWR Sbjct: 169 IGVAT-----IVSDLRPPLEEFKASTGSD------VFLVDRAGH-MTDGTNDL--LWRVF 214 Query: 513 D--------RSNFMRDGNQAAVLVSLALNAPSGHALGTLLAMLPQAPRLEPEEDLAILLW 564 + R RDG++ +V L+ G +G L+++ + ++ ++ Sbjct: 215 ESKISVRKSRLETWRDGSRFYSVVVFPLSDGEGRVIGALVSVRDSTDTQARQHEIRMIAI 274 Query: 565 AALAASALLALLLYV---RSPFVLLGQATRQLERLADGDT----DVQAPLQGVRQVRLWH 617 A+ LL L+++ R F L QA L L+ GDT DV+ + ++ Sbjct: 275 GAVGVFLLLVLVVFSVYLRRSFDPLDQAIAVLNALSRGDTSVMLDVRHENDEIGRIASTV 334 Query: 618 GMMQRIAGKIDALETLRRSRERQGKRQARFIRRQMMQLAERLDEAARRGILEDLHRIEHG 677 G+ + A KID LE R + R+ Q FIR QM++L+E L++ AR +L DL +IE Sbjct: 335 GVFRENAIKIDMLEERRERQRRR---QELFIRLQMLRLSEMLEQDAREAVLGDLKQIEEL 391 Query: 678 RRPDATSDSGTDERAGRIADEFGVLALGFQNLVSRVGEQYQELDRLVNQ-------LREA 730 + D G D G E VLA+ FQ + SR+ EQ++ L+ L+ + LREA Sbjct: 392 SNRSTSGDQGGDGAKG----ELEVLAVAFQTMSSRIREQHERLESLIAERTRDVEILREA 447 Query: 731 LQAKTQFIALQQELEIASKMQLSILPRQFAANP---ALSLHAMMIPAKEVGGDFYDFFDL 787 L+ + Q AL+QEL+ A ++QLS LP+ F P +HA M+PAKEVGGDFYDFF + Sbjct: 448 LRTRDQLAALRQELDFARELQLSSLPQVFPPFPDRAEFQIHASMVPAKEVGGDFYDFFFI 507 Query: 788 DAHRTALVIADVSGKGVPAAFFMAVSRTLLRAIAPYTSSAAACIARVNDLLAADNEEMMF 847 D H VI D SGKGVPAA F+A++R+L++A+AP +SS C+A VN +LA DN + +F Sbjct: 508 DHHNLGFVIGDASGKGVPAAMFIAITRSLVKAVAPLSSSPGECLAFVNTMLARDNPQTLF 567 Query: 848 VTLFYAILDTRDGSMHYINAGHNPPYLLRADGRAGHPPATRGIALAVETDMYFEQGTVQL 907 T FY +LDTR G + + NAGH PP +LR DGR G+AL V D+ +E G QL Sbjct: 568 ATCFYGVLDTRTGEVGFCNAGHPPPMILRGDGRVDAIRDVSGVALGVMEDLDYETGHFQL 627 Query: 908 APGDGLFLYTDGITEATDPDQQLFGEQRLIEELKQMTGRPVDQITRHVVERIKDFEAGGP 967 APG+ + LYTDG+TEA D L+ E RLI EL + + + V+ ++ F P Sbjct: 628 APGEVVHLYTDGVTEAQDSVDALYDEPRLIAELGRTADTAPEAVIAAVLRSVEAFVGSAP 687 Query: 968 QADDITCMMVRY 979 Q DDIT + +R+ Sbjct: 688 QFDDITMLTLRF 699 >ref|YP_001527139.1| histidine kinase [Azorhizobium caulinodans ORS 571] dbj|BAF90221.1| histidine kinase [Azorhizobium caulinodans ORS 571] Length = 682 Score = 277 bits (709), Expect = 7e-72, Method: Composition-based stats. Identities = 207/557 (37%), Positives = 297/557 (53%), Gaps = 50/557 (8%) Query: 441 AVRRIEI-EGHALLLVATRPLEKSLGRLRERLLATRVAAGDDGASSLQVAVADLRGQPVL 499 A RRI + G ++LV LGR R TR A ASSL LRGQ Sbjct: 154 AARRISLPNGDNVILV--------LGR-DARSAVTRFAGSIHAASSLLT----LRGQL-- 198 Query: 500 DAYASLTSLWRAHDRS----NFMRDGNQAAVLVSLALNAPSG----HALGTLLAMLPQAP 551 A A+ +LWR + + +RD + + + P G +G L++M+ Sbjct: 199 -AAATDPNLWRQANLAISPRQALRDEIALSGRIYSVTSVPVGDITNSTVGALVSMVDNTE 257 Query: 552 RLEPEED---LAILLWAALAASALLALLLYVRSPFVLLGQATRQLERLADGDTDVQAPLQ 608 + + I + LA ++ L ++ F L +A L+ L+ GDT V Sbjct: 258 SITYARRVRAIGITIGLGLALLGIVGLNAFLWYSFRPLERAIDVLQALSRGDTSVSLNYA 317 Query: 609 GVRQVRLWHGMMQRIAGKIDALETLRRSRERQGKRQARFIRRQMMQLAERLDEAARRGIL 668 G ++ + + L RR RER +RQ I ++ LA+ +D R +L Sbjct: 318 GRDEIGRIAKALVSFRANVQELAETRRQRERVRRRQEMVISAELKALADAIDPQDRDQVL 377 Query: 669 EDLHRIEHGRRPDATSDSGTDE--RAGRIADEFGVLALGFQNLVSRVGEQYQELDRLVNQ 726 L A +D G DE R R+ +L R+ EQ+ L +V + Sbjct: 378 SLL---------TADTDRGEDELRRVARV----------LHDLSRRIVEQHTRLSSMVVE 418 Query: 727 LREALQAKTQFIALQQELEIASKMQLSILPRQFAANPALSLHAMMIPAKEVGGDFYDFFD 786 LREAL KT+ LQQELEIA+++QL+ILPR F +P + +H M PA+EVGGDFYD+F Sbjct: 419 LREALVTKTKLAGLQQELEIAAQVQLAILPRAFPPHPRIGVHGHMTPAREVGGDFYDYFL 478 Query: 787 LDAHRTALVIADVSGKGVPAAFFMAVSRTLLRAIAPYTSSAAACIARVNDLLAADNEEMM 846 +D V+ADVSGKGVPAA FMA+SRTLLR+ A + S A + R+NDLLA +NE+M+ Sbjct: 479 IDDSTLGFVVADVSGKGVPAALFMAISRTLLRSTAMFERSPAVSVRRLNDLLALENEQML 538 Query: 847 FVTLFYAILDTRDGSMHYINAGHNPPYLLRADGRAGHPPATRGIALAVETDMYFEQGTVQ 906 FVTLFY +++ G + Y+NAGHN PY + P+T+G+A+AV +E+G + Sbjct: 539 FVTLFYGVINLDTGKVSYVNAGHNLPYKITQANEVSVVPSTKGMAVAVMEGFVYEEGELY 598 Query: 907 LAPGDGLFLYTDGITEATDPDQQLFGEQRLIEELKQMTGR-PVDQITRHVVERIKDFEAG 965 L+ GD LFLYTDG+ EA D D+ +G++RL E LK+ PV ++ V++ ++ FE G Sbjct: 599 LSAGDTLFLYTDGVPEAFDIDEAPYGDERLAELLKEGAAHWPVPEMPERVLQSVRAFERG 658 Query: 966 GPQADDITCMMVRYRGG 982 PQADDITC+ +RY GG Sbjct: 659 APQADDITCLTLRYFGG 675 >emb|CAM77154.1| Stage II sporulation E [Magnetospirillum gryphiswaldense MSR-1] Length = 986 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 171/420 (40%), Positives = 244/420 (58%), Gaps = 27/420 (6%) Query: 577 LYVRSPFVLLGQATRQLERLADGDTDVQAPLQGVRQVRLWHGMMQRIAGKIDA------- 629 +Y+R F L +A L L+ GDT V +VR + RIAG + Sbjct: 291 VYLRRSFHPLDEAIAVLNALSRGDTSVTL------EVRNDKDEIGRIAGTVGVFRENTVK 344 Query: 630 LETLRRSRERQGKRQARFIRRQMMQLAERLDEAARRGILEDLHRIEHGRRPDATSDSGTD 689 L+ +++ RERQ +RQ FIR QM++L+E L+E AR IL D+ +IE A S+ D Sbjct: 345 LDLMQQRRERQRRRQELFIRLQMLKLSEMLEEEARAAILSDMKQIEAMAERKAGSEDSAD 404 Query: 690 ERAGRIADEFGVLALGFQNLVSRVGEQYQELDRLVNQ-------LREALQAKTQFIALQQ 742 G E VL + FQ + R+ EQ+ L+ L+ + LREAL+ + Q AL+Q Sbjct: 405 SGKG----ELEVLGVAFQTMSDRIREQHLSLETLIAERTREAEVLREALRTRDQLNALRQ 460 Query: 743 ELEIASKMQLSILPRQFAANP---ALSLHAMMIPAKEVGGDFYDFFDLDAHRTALVIADV 799 EL+ A ++QLS LP+ F P +HA M+PAKEVGGDFYDFF LD H +VI D Sbjct: 461 ELDFARELQLSSLPQVFPPFPDRDEFQIHAAMVPAKEVGGDFYDFFLLDHHHLGIVIGDA 520 Query: 800 SGKGVPAAFFMAVSRTLLRAIAPYTSSAAACIARVNDLLAADNEEMMFVTLFYAILDTRD 859 SGKGVPAA F+A++R+L++A+AP + S C+A VN +L+ADN + +F T FYA++DTR Sbjct: 521 SGKGVPAAMFIAIARSLIKAVAPLSRSPGECLAFVNTMLSADNPQTLFATCFYAVVDTRS 580 Query: 860 GSMHYINAGHNPPYLLRADGRAGHPPATRGIALAVETDMYFEQGTVQLAPGDGLFLYTDG 919 G + + NAGH PP +LR G+AL V D+ ++ GT +AP D + LYTDG Sbjct: 581 GEVAFCNAGHPPPLILRQGQNVDAIRDVSGVALGVMEDLEYDTGTFTIAPNDTIVLYTDG 640 Query: 920 ITEATDPDQQLFGEQRLIEELKQMTGRPVDQITRHVVERIKDFEAGGPQADDITCMMVRY 979 +TEA D + L+ E RLI+ L+ + +Q+ V ++ F PQ DDIT + +R+ Sbjct: 641 VTEAQDVSETLYDEPRLIQTLRGLGPIHPEQVIATVQRAVEAFVGDAPQFDDITMLSLRF 700 >ref|YP_003448952.1| sigma-B regulation protein [Azospirillum sp. B510] dbj|BAI72408.1| sigma-B regulation protein [Azospirillum sp. B510] Length = 750 Score = 275 bits (703), Expect = 3e-71, Method: Composition-based stats. Identities = 183/410 (44%), Positives = 246/410 (60%), Gaps = 19/410 (4%) Query: 578 YVRSPFVLLGQATRQLERLADGDTDVQAPLQGVRQVRLWHGMMQRIAGKIDALETLRRSR 637 ++R F L A + L+ L+ G G ++ + + RIAG ++ + R Sbjct: 322 FLRRNFSTLDVAVKALQDLSHGRA------MGYVELPAGNDEIGRIAGAVEVFSGVMREI 375 Query: 638 ERQG-------KRQARFIRRQMMQLAERLDEAARRGILEDLHRIEHGRRPDATSDSGTDE 690 ER +RQ RFIRRQM LA L+E AR+ +LE+L +IE T D+ + + Sbjct: 376 ERSAGQRERRLRRQQRFIRRQMEALAVTLEEDARQTLLEELRQIEA-----ETYDAQSSQ 430 Query: 691 RAGRIADEFGVLALGFQNLVSRVGEQYQELDRLVNQLREALQAKTQFIALQQELEIASKM 750 G + DE G+LALGF L +RVG Q +L R+V LREAL K + I+LQQELEIA M Sbjct: 431 SKG-VGDELGLLALGFSRLATRVGSQQVQLTRMVRDLREALADKRRLISLQQELEIARTM 489 Query: 751 QLSILPRQFAANPALSLHAMMIPAKEVGGDFYDFFDLDAHRTALVIADVSGKGVPAAFFM 810 QL+ILP+ F P L + A MIPAKEVGGDFYDFF + + ALVIADVSGKG+PAAFFM Sbjct: 490 QLTILPQVFPDLPELDIAARMIPAKEVGGDFYDFFPISDSKVALVIADVSGKGIPAAFFM 549 Query: 811 AVSRTLLRAIAPYTSSAAACIARVNDLLAADNEEMMFVTLFYAILDTRDGSMHYINAGHN 870 ++RT+LRAIA A + RVN+LLAA+NE+MMFVT+FY LD R G + Y N GHN Sbjct: 550 LITRTMLRAIAESGVGPAETLRRVNNLLAAENEQMMFVTVFYGELDLRTGVLCYSNGGHN 609 Query: 871 PPYLLRADGRAGHPPATRGIALAVETDMYFEQGTVQLAPGDGLFLYTDGITEATDPDQQL 930 PP + A G GIALA DM F + +V L G+ + L+TDG+TEA D ++ + Sbjct: 610 PPLRMTASGAVRELERIPGIALAAMPDMPFGERSVTLDTGEMVVLFTDGVTEAFDGEEVM 669 Query: 931 FGEQRLIEELKQMTGRPVDQITRHVVERIKDFEAGGPQADDITCMMVRYR 980 +G+ RL + V+ + F AG PQ+DDITC+++R+R Sbjct: 670 YGDPRLAAAVAGQASASARDGLDGVLADLSRFTAGAPQSDDITCLVLRWR 719