BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2809.p (526 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003448957.1| major facilitator superfamily permease [Azos... 174 4e-41 ref|YP_003450227.1| methyl-accepting chemotaxis protein [Azospir... 148 2e-33 ref|YP_422886.1| major facilitator superfamily permease [Magneto... 137 5e-30 ref|ZP_00055979.1| COG0477: Permeases of the major facilitator s... 137 7e-30 emb|CAM77151.1| Major facilitator superfamily MFS_1 [Magnetospir... 130 7e-28 >ref|YP_003448957.1| major facilitator superfamily permease [Azospirillum sp. B510] dbj|BAI72413.1| major facilitator superfamily permease [Azospirillum sp. B510] Length = 723 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 213/414 (51%), Gaps = 15/414 (3%) Query: 119 VQLTRLRLAVFLIALSDELLRPFFTAFASEMQTSSAWLSPAMLAGLPVVAFMCTLALSQI 178 + L LRL VFL LS+EL RPF A+A + WL+P ++ GLP+ FM ALSQ Sbjct: 314 LNLVFLRLPVFLFCLSEELSRPFLPAYAKSFAGAVPWLTPDLVVGLPITLFMLIWALSQP 373 Query: 179 IGPMLAQRFDLRRMLMLAVPAGALALVGTAFTHDVGALVLLRSVSGAAYGLGLILVQTAI 238 G ++R+ R + GA+ L TA + L+ R ++ YGL LI Q + Sbjct: 374 GGARFSERWGRARSFTIGALLGAVGLALTASAGSLFELLAWRCLTALGYGLVLITAQGIV 433 Query: 239 VRHAPPAQRARSLAEVAAAIVAAGIVGPPFGGMLSGRIG-DAHALLACALAMIGALVVAS 297 V H+ P RA +A A++AAG+ GP GG+++ ++G A LL ALA+ L V+ Sbjct: 434 VDHSTPRNRAAGMAMFIGALLAAGVCGPVGGGIIADQVGFRATFLLGSALALGSGLSVSL 493 Query: 298 RLRLSCTARGAETLVTTTAPT----WRGYLAVLHNWRAMCVILGSALPARLVAVTVLVVV 353 L A T AP WR + A+ ++R ++L SA+P ++ + L + Sbjct: 494 LLLRG-RAAARPAAATGQAPVMAGGWRLFRALFGDFRFSALMLLSAIPTKIASTAFLFCL 552 Query: 354 APLYVRQLELSADAAGRVMLMYFLCFAATASLMAHWSDLLGQRKPFIVAGCLVAAVACLQ 413 PL + S GRV +MYF+ F + L A SD R+ FI AG L +CL Sbjct: 553 VPLLLTADGSSKAEIGRVQMMYFVAFILVSPLAASLSDRWQARRGFIAAGGLGTLASCLP 612 Query: 414 LPAIQGIGGLALCCALLGVGQAVQSSPQITLVTELFERKDASVQAATPEQ-ALAAFRLIE 472 + A Q + G L AL G+ QA+ +PQ+TLV+++ + + PE A+ +RL+E Sbjct: 613 IVATQALWGPPLAIALFGLSQALVGAPQLTLVSQI------AREGGLPETAAIGWYRLVE 666 Query: 473 RGGSIIAPFVTALAIAL-LGLEGAVAAVGVLLALGALGVWLGLRPSAPLAISAR 525 R G + P VTA+A+A+ A+ +G+L AL W+ RP P A +AR Sbjct: 667 RLGGALGP-VTAMAVAVATSYREAMLGIGLLCGASALLFWILFRPRRPSAPAAR 719 >ref|YP_003450227.1| methyl-accepting chemotaxis protein [Azospirillum sp. B510] dbj|BAI73683.1| methyl-accepting chemotaxis protein [Azospirillum sp. B510] Length = 667 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 124/408 (30%), Positives = 208/408 (50%), Gaps = 12/408 (2%) Query: 120 QLTRLRLAVFLIALSDELLRPFFTAFASEMQTSSAWLSPAMLAGLPVVAFMCTLALSQII 179 ++ LR AVF+ +L++EL R F + + ++ L ++ G P+ FM AL+Q + Sbjct: 261 RIGELRFAVFVFSLAEELTRTFLSVYIKDLFEPVPGLGKELVIGAPIALFMLIWALAQPV 320 Query: 180 GPMLAQRFDLRRMLMLAVPAGALALVGTAFTHDVGALVLLRSVSGAAYGLGLILVQTAIV 239 +++R R + ++ AL L+G+ D+ L+L R V+ Y I Q ++ Sbjct: 321 AGNVSERRGRRTVFLIGASLSALGLLGSGLATDLIQLILARCVTAVGYASVFISAQGFVI 380 Query: 240 RHAPPAQRARSLAEVAAAIVAAGIVGPPFGGMLSGRIGDAHALLACALAMIGALVVASRL 299 P +RA ++A A I+ AG+ GP GG+++ ++G + A+ + A ++A R+ Sbjct: 381 DATDPRRRAGAIALYAGGILTAGVCGPAIGGVIADQVGFRMTFIVSAMLAVAAALMAWRV 440 Query: 300 RLSCTARGAETLVTTTAPTWRGYLAVLHNWRAMCVILGSALPARLVAVTVLVVVAPLYVR 359 G + P R + L N R + V L SA+PA+ +L + PL + Sbjct: 441 LPKHAGAGGKARTRGLTP--RDFGMCLANPRFVAVTLFSAVPAKFGLTALLFFLLPLALD 498 Query: 360 QLELSADAAGRVMLMYFLCFAATASLMAHWSDLLGQRKPFIVAGCLVAAVACLQLPAIQG 419 +S GRV+L+Y+L + L+AH SD G+R PF+ G + AA + L +I G Sbjct: 499 DNGVSQSWIGRVLLLYWLMMIVVSPLVAHLSDRSGRRTPFLAIGGVTAAGSAYVL-SISG 557 Query: 420 IGGLALC-CALLGVGQAVQSSPQITLVTELFERKDASVQAATPEQALAAFRLIERGGSII 478 L + ALLG+ A+ ++PQ+ L+ E R+ +++ T + FRLIER GS++ Sbjct: 558 TLPLTITGVALLGLAHALVNTPQMALLAESCVRERSTLGETT---VIGMFRLIERLGSVV 614 Query: 479 APFVTALAIALLGLEGAVAAVGVLLALGA-----LGVWLGLRPSAPLA 521 APF+ L +A G GA+ +G++LA L G RPSA L+ Sbjct: 615 APFLAGLFLAHYGYHGAMKGIGIVLAACVVVQLLLTTTFGGRPSAALS 662 >ref|YP_422886.1| major facilitator superfamily permease [Magnetospirillum magneticum AMB-1] dbj|BAE52327.1| Permease of the major facilitator superfamily [Magnetospirillum magneticum AMB-1] Length = 699 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 106/393 (26%), Positives = 189/393 (48%), Gaps = 13/393 (3%) Query: 120 QLTRLRLAVFLIALSDELLRPFFTAFASEMQTSSAWLSPAMLAGLPVVAFMCTLALSQII 179 Q T +RL +FL ++E+ R F + ++ + L+P ++ GLP+ FM +AL+ Sbjct: 296 QATDIRLPLFLFVFAEEISRSFMPLYIRDLYAPISGLTPELVMGLPIALFMLVIALASPS 355 Query: 180 GPMLAQRFDLRRMLMLAVPAGALALVGTAFTHDVGALVLLRSVSGAAYGLGLILVQTAIV 239 +LA R RR+ ++ + + V + V L++ R + Y + Q I Sbjct: 356 ASLLANRLGARRVFLIGLVPATIGFVMSGLAFSVYDLIVWRVATALGYAFITMACQGYIA 415 Query: 240 RHAPPAQRARSLAEVAAAIVAAGIVGPPFGGMLSGRIGDAHALLACALAMIGALVVASRL 299 + + RA+ L A++ A + G GG+L+ R+G + A+ + ++ RL Sbjct: 416 QVSRQQTRAQGLGVYVGAVLTASVCGTGIGGVLAERVGFRVTFIVAAVLTVVTAILIWRL 475 Query: 300 RLSCTARGAETLVTTTAPTWRGYLAVLHNWRAMCVILGSALPARLVAVTVLVVVAPLYVR 359 S A+ + +P R +L +L NWR +++ +A+PA++ L + PL + Sbjct: 476 LDS-----AQPVAEGASPRKRDFLRLLRNWRFSALVVFAAIPAKIALTGFLFFLVPLTLS 530 Query: 360 QL-ELSADAAGRVMLMYFLCFAATASLMAHWSDLLGQRKPFIVAGCLVAAVACLQLPAIQ 418 Q + R+M+ Y + + L A ++D +G R + G L+ A L LPA Sbjct: 531 QYPAIDLGDMARMMMAYPVSVVLLSPLAARFADRVGWRAGLLAVGGLIGG-AGLVLPAFW 589 Query: 419 GIGGLALCCA--LLGVGQAVQSSPQITLVTELFERKDASVQAATPEQALAAFRLIERGGS 476 G +A+ A +LG+ + +SPQ+ ++ +L +A LA RL ER GS Sbjct: 590 GEPVIAVQVAILMLGISHGLSASPQLAMIPDLCW---TECRAIGQTNVLAFLRLAERIGS 646 Query: 477 IIAPFVTALAIALLGLEGAVAAVG-VLLALGAL 508 P + A+ I L G +GA+ A+G V+LA+ A+ Sbjct: 647 FAGPLLAAVLIPLYGHQGAIVALGWVVLAMAAV 679 >ref|ZP_00055979.1| COG0477: Permeases of the major facilitator superfamily [Magnetospirillum magnetotacticum MS-1] Length = 699 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 103/393 (26%), Positives = 189/393 (48%), Gaps = 13/393 (3%) Query: 120 QLTRLRLAVFLIALSDELLRPFFTAFASEMQTSSAWLSPAMLAGLPVVAFMCTLALSQII 179 Q T +RL +FL ++E+ R F + ++ + L+P ++ GLP+ FM +AL+ Sbjct: 296 QATDIRLPLFLFVFAEEISRSFMPLYIRDLYAPISGLTPELVIGLPIALFMLVIALASPS 355 Query: 180 GPMLAQRFDLRRMLMLAVPAGALALVGTAFTHDVGALVLLRSVSGAAYGLGLILVQTAIV 239 +LA R RR+ ++ + + V + V L+L R + Y + Q I Sbjct: 356 ASLLANRLGARRVFLIGLVPATIGFVMSGLAFSVYDLILWRMATALGYAFITMACQGYIA 415 Query: 240 RHAPPAQRARSLAEVAAAIVAAGIVGPPFGGMLSGRIGDAHALLACALAMIGALVVASRL 299 + + RA+ L A++ A + G GG+L+ R+G + A+ + ++ RL Sbjct: 416 QVSRQQTRAQGLGVYVGAVLTASVCGTGIGGVLAERVGYRITFIVAAVLTVITAILIWRL 475 Query: 300 RLSCTARGAETLVTTTAPTWRGYLAVLHNWRAMCVILGSALPARLVAVTVLVVVAPLYVR 359 L G E T+P R +L +L NWR +++ +A+PA+L + + PL + Sbjct: 476 -LDSAQPGGE----VTSPRKREFLRLLRNWRFSALVVFAAIPAKLALTGFMFFLVPLTLS 530 Query: 360 Q-LELSADAAGRVMLMYFLCFAATASLMAHWSDLLGQRKPFIVAGCLVAAVACLQLPAIQ 418 Q + R+M++Y + + L A ++D +G R + G ++ A L LPA Sbjct: 531 QNPSIDLGDMARMMMVYPVSVVLLSPLAARFADRVGWRAGLVALGGVIGG-AGLVLPAYW 589 Query: 419 G--IGGLALCCALLGVGQAVQSSPQITLVTELFERKDASVQAATPEQALAAFRLIERGGS 476 + + + +LG+ + +SPQ+ ++ +L +A LA RL ER GS Sbjct: 590 SDPVAAVQVAILMLGISHGLSASPQLAMIPDLCW---TECRAIGQTNVLAFLRLAERIGS 646 Query: 477 IIAPFVTALAIALLGLEGAVAAVG-VLLALGAL 508 + P + A+ I + G +GA+ A+G V+L++ A+ Sbjct: 647 FVGPLLAAVLIPVYGYQGAIIALGWVVLSMAAV 679 >emb|CAM77151.1| Major facilitator superfamily MFS_1 [Magnetospirillum gryphiswaldense MSR-1] Length = 736 Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 176/386 (45%), Gaps = 7/386 (1%) Query: 124 LRLAVFLIALSDELLRPFFTAFASEMQTSSAWLSPAMLAGLPVVAFMCTLALSQIIGPML 183 +RL +FL ++EL R F +A + + + WL+P +L LP+ FM +A+ + + Sbjct: 336 VRLPLFLFIFAEELSRAFMPLYAQALPSQAGWLTPEVLMALPIAVFMAGIAVGSLWAGAV 395 Query: 184 AQRFDLRRMLMLAVPAGALALVGTAFTHDVGALVLLRSVSGAAYGLGLILVQTAIVRHAP 243 +R R++ + L V + V L L R ++G Y L + Q+ I + Sbjct: 396 TERLGSRKVFQFGLAPAVLGCVMSGLAQGVVELSLWRGIAGLGYALVTVACQSYISKTTV 455 Query: 244 PAQRARSLAEVAAAIVAAGIVGPPFGGMLSGRIGDAHALLACALAMIGALVVASRLRLSC 303 + RA L A++ A + G GG+L+ RIG A + ++ + + S L LS Sbjct: 456 DSNRATGLGSYVGAVLTAAVCGTAAGGVLAERIGFAPTFFVSTVLILVSGWLLSHL-LSV 514 Query: 304 TARGAETLVTTTAPTWRGYLAVLHNWRAMCVILGSALPARLVAVTVLVVVAPLYVRQLEL 363 GA V P+ R L + NWR ++L +A+PA++ + PL + + Sbjct: 515 VEHGAP--VVAPVPSGRPLLRIFANWRFTVLVLFAAIPAKMALTGYFFFLVPLTLWSSDH 572 Query: 364 SADAAGRVMLMYFLCFAATASLMAHWSDLLGQRKPFIVAGCLVAAVACLQLPAIQGIGGL 423 S R+M++Y L A +S +D +G R + G L+ L + A G L Sbjct: 573 SLAELARIMVLYPLVMLAVSSQSTRLADQMGWRIGQVALGGLIGGAGILSMLAFDGTLPL 632 Query: 424 ALCCALLGVGQAVQSSPQITLVTELFERKDASVQAATPEQALAAFRLIERGGSIIAPFVT 483 + LG+ + +SPQ+ + ++ Q LA R +ER GS+I P + Sbjct: 633 VIGIVCLGISHGMSASPQLAAIPDICW---IECNRHGRTQVLALLRTLERVGSVIGPLLA 689 Query: 484 ALAIALLGLEGAVAAVG-VLLALGAL 508 A + G +GAV +G V+L + A+ Sbjct: 690 AGFLLHWGPKGAVIGLGAVVLVMAAI 715