BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2807.p (375 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003448956.1| ABC-type transport system periplasmic protei... 236 6e-60 ref|YP_003450226.1| ABC transporter substrate-binding protein [A... 212 1e-52 ref|YP_001527134.1| ABC transporter periplasmic protein [Azorhiz... 195 1e-47 ref|ZP_00055978.2| COG2984: ABC-type uncharacterized transport s... 188 1e-45 ref|YP_422885.1| ABC transporter, periplasmic component [Magneto... 182 5e-44 >ref|YP_003448956.1| ABC-type transport system periplasmic protein [Azospirillum sp. B510] dbj|BAI72412.1| ABC-type uncharacterized transport system periplasmic component precursor [Azospirillum sp. B510] Length = 355 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 138/306 (45%), Positives = 176/306 (57%), Gaps = 1/306 (0%) Query: 57 TVTIAMVLPREEQNIEEAFKAYLQHQGLSVHYIPIRFSGRAEDAGRLRQEVRDAHPDLIY 116 T I MVL R E + E FK YL +GL V Y G + +E+RD PDLIY Sbjct: 48 TFRITMVLGRGESDNEFGFKDYLARRGLKVDYTIRNTGGDTAKLPGIIEEIRDTRPDLIY 107 Query: 117 SWGTPTTLALAGKVD-GPAGDAIRDIPIVFTEVTDPVGAGLMRSLDHHESNVTGVSHVAP 175 SWGTP T L G D I DIP+VFT V PV A ++ L H NVTG H+AP Sbjct: 108 SWGTPQTRGLVGPYDDADPRKFITDIPVVFTFVAAPVDARIVPDLGHPGRNVTGTIHIAP 167 Query: 176 LPVQLNAIRSYRPFSRLGYLHNPAEPNSALVRAQLQQLAAQQKFEVESADIPLDARGEPD 235 + VQLN I++YRP RLG ++NP E NS L L+ +A + E+ +PL+ RGEP Sbjct: 168 IAVQLNTIQAYRPIKRLGIVYNPQERNSILTIEGLRAESALRGLELIEEPVPLNDRGEPI 227 Query: 236 VQALPGLIRGMAERKVDFLYIGPSTLLAFTHRDLVTGAALQARLPTFCATESIVRRSGCM 295 A+P + +A R + LYIGP T +AF +R +V AL+ RLPTF TE IVR M Sbjct: 228 AAAVPDALARVARRGAEVLYIGPDTFIAFHNRAVVAAEALRLRLPTFSVTELIVRTDRAM 287 Query: 296 FGLFSNGANTGRYAAAKAMQILVQHIPAQRIPASTLQRFSLLINMRTAQGLDLYPPMLLL 355 L S+ GR+ A KA QIL+ IP TL+RFS++INM T + L+ YPP+ LL Sbjct: 288 LALASSAYGIGRFTAFKAAQILLDGTSPAGIPVETLKRFSVIINMATVRSLEYYPPIGLL 347 Query: 356 NIAEVI 361 N AE+I Sbjct: 348 NFAEII 353 >ref|YP_003450226.1| ABC transporter substrate-binding protein [Azospirillum sp. B510] dbj|BAI73682.1| ABC transporter substrate-binding protein [Azospirillum sp. B510] Length = 355 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 128/330 (38%), Positives = 184/330 (55%), Gaps = 7/330 (2%) Query: 38 ALAQTPAPRDQPVEARHIG-----TVTIAMVLPREEQNIEEAFKAYLQHQGLSVHYIPIR 92 A+A T P P + + I ++ PR++ F+ L+ G+ I +R Sbjct: 24 AVAATGVPAGSPASGQGMPGRGGRPANIVVLTPRKDVGDVLGFRELLESMGMQAK-IDVR 82 Query: 93 FSGRAEDAGRLRQEVRDAHPDLIYSWGTPTTLALAGKVDGP-AGDAIRDIPIVFTEVTDP 151 +A + E+R A PDL+ + TP TLA G+ D P + +P+VFT VTDP Sbjct: 83 EVPQATAVAAMLPEIRAAKPDLVLTVFTPLTLAAVGRYDDPDPSKFLTGVPVVFTSVTDP 142 Query: 152 VGAGLMRSLDHHESNVTGVSHVAPLPVQLNAIRSYRPFSRLGYLHNPAEPNSALVRAQLQ 211 V + ++RSL+ VTG H+AP+ VQL I +YR + ++ ++NPAE N + L+ Sbjct: 143 VASRIIRSLEQPGRAVTGTRHIAPVAVQLKTILAYRRWRKIAAVYNPAEENMIVAVRDLR 202 Query: 212 QLAAQQKFEVESADIPLDARGEPDVQALPGLIRGMAERKVDFLYIGPSTLLAFTHRDLVT 271 + A +Q EV IP D G+P+ A+P +IR +A+ + +YIGP TL+A + V Sbjct: 203 EEAGRQGVEVIDGAIPRDGSGKPNANAIPDVIREVAKAGAELVYIGPDTLVASNNSQAVA 262 Query: 272 GAALQARLPTFCATESIVRRSGCMFGLFSNGANTGRYAAAKAMQILVQHIPAQRIPASTL 331 AAL + TFC+TE +R SG + GL S N GR+A KA IL PA +P TL Sbjct: 263 DAALANNVATFCSTELPIRHSGLLMGLVSPAINVGRFAGVKAYDILTGSRPAAAVPVETL 322 Query: 332 QRFSLLINMRTAQGLDLYPPMLLLNIAEVI 361 RFSLL+ + TA+ LDLYPPM LLNIAE+I Sbjct: 323 NRFSLLLRIDTAKRLDLYPPMRLLNIAEII 352 >ref|YP_001527134.1| ABC transporter periplasmic protein [Azorhizobium caulinodans ORS 571] dbj|BAF90216.1| putative ABC-type uncharacterized transport system periplasmic component precursor [Azorhizobium caulinodans ORS 571] Length = 340 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 117/305 (38%), Positives = 162/305 (53%), Gaps = 1/305 (0%) Query: 57 TVTIAMVLPREEQNIEEAFKAYLQHQGLSVHYIPIRFSGRAEDAGRLRQEVRDAHPDLIY 116 T I M+ R E E F+ L GL I + R+ ++ PDLIY Sbjct: 35 TYKILMLTFRGETEAERGFRDLLDTAGLKTEIISRDARRDIANLPRMLADLDTLKPDLIY 94 Query: 117 SWGTPTTLALAGKVDGPAGDAIRDIPIVFTEVTDPVGAGLMRSLDHHESNVTGVSHVAPL 176 +WGTP TL + G D IRDIP+VF V+ PV A + S NVTG HV P Sbjct: 95 TWGTPVTLGVVGPYDSQDPKYIRDIPVVFALVSAPVQARIAPSFASSGRNVTGAVHVVPT 154 Query: 177 PVQLNAIRSYRPFSRLGYLHNPAEPNSALVRAQLQQLAAQQKFEVESADIPLDARGEPDV 236 VQ+ A++SY FS +G L++ E NS ++ +++ A +V + DA G P Sbjct: 155 DVQMKAMQSYMEFSTIGILYSETEQNSVVIVREVEAFAKANGAKVIARPFKTDASGRPTA 214 Query: 237 QALPGLIRGMAERKVDFLYIGPSTLLAFTHRDLVTGAALQARLPTFCATESIVRRSGCMF 296 + ++ + K D+LY+ P T L T D VT AAL A +PTF A E +R G + Sbjct: 215 DGVEQMVTQLRADKADWLYLLPDTFLG-TIYDRVTPAALAAGMPTFGAAELAIREGGALV 273 Query: 297 GLFSNGANTGRYAAAKAMQILVQHIPAQRIPASTLQRFSLLINMRTAQGLDLYPPMLLLN 356 GL S + G+ A KA++IL Q P RIP TL+RFSL+INMR A+ L +YPP+ +LN Sbjct: 274 GLVSRYYSVGQLAGTKAVEILSQGTPPSRIPIETLKRFSLVINMRVAKSLGIYPPIAMLN 333 Query: 357 IAEVI 361 AE++ Sbjct: 334 YAELV 338 >ref|ZP_00055978.2| COG2984: ABC-type uncharacterized transport system, periplasmic component [Magnetospirillum magnetotacticum MS-1] Length = 340 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 130/347 (37%), Positives = 188/347 (54%), Gaps = 27/347 (7%) Query: 21 AGMTRLLCALFLCNATLALAQTPAPRDQPVEARHIGTVTIAMVLPREEQNIEEAFKAYLQ 80 A + +LCAL A A+T P I M L R ++ + FK Y Sbjct: 5 ATLCLILCALVWPGGAFA-AETAKP------------FRIYMALWRGWEDAAQGFKDYFA 51 Query: 81 HQGLSVHYIPIRFSGRAEDAGRLRQEVRDAHP---DLIYSWGTPTTLALAGKVDG--PAG 135 +QG+ V I IR +G +D +L++ V +A DL+++WGT + + G+ D PA Sbjct: 52 NQGIPVEMI-IRDAG--QDKAKLKEFVAEAKALKVDLVFTWGTTVSEEMLGRSDNVDPA- 107 Query: 136 DAIRDIPIVFTEVTDPVGAGLMRSLDHHESNVTGVSHVAPLPVQLNAIRSYRPFSRLGYL 195 + I DIP VF V+ PVG G++ SL E N+TG ++ P+ Q+N I+SYRP RLG + Sbjct: 108 NHITDIPAVFAVVSQPVG-GVVSSLASSERNITGTLYLVPMETQVNLIQSYRPLKRLGMI 166 Query: 196 HNPAEPNSALVRAQLQQLAAQQKFEVESADIPLDARG-EPDVQALPGLIRGMAERKVDFL 254 NP E NS + QL+ + FEV + +PL+ G +P V ++ + + +VDFL Sbjct: 167 FNPLERNSQVAAEQLEGIGKASGFEVVA--LPLEVEGGKPSVASIAAKVAEIKAARVDFL 224 Query: 255 YIGPSTLLAFTHRDLVTGAALQARLPTFCATESIVRRSGCMFGLFSNGANTGRYAAAKAM 314 YI P T L +RD++T AAL +PTF A E+ V S MFG G+ A KA Sbjct: 225 YIPPDTFLNI-NRDILTQAALDHAIPTFAAAENPVVTSKAMFGGVYRYYTVGQLTAYKAE 283 Query: 315 QILVQHIPAQRIPASTLQRFSLLINMRTAQGLDLYPPMLLLNIAEVI 361 QILV+ I + IP +R S+LINM + + LYPPM L+ +AE+I Sbjct: 284 QILVRKIAPKDIPIDAPKRLSVLINMPVVRQIGLYPPMKLMGLAEII 330 >ref|YP_422885.1| ABC transporter, periplasmic component [Magnetospirillum magneticum AMB-1] dbj|BAE52326.1| ABC-type uncharacterized transport system, periplasmic component [Magnetospirillum magneticum AMB-1] Length = 340 Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 117/307 (38%), Positives = 174/307 (56%), Gaps = 12/307 (3%) Query: 60 IAMVLPREEQNIEEAFKAYLQHQGLSVHYIPIRFSGRAEDAGRLRQEVRDAHP---DLIY 116 I M L R ++ + FK Y +QG+ V I IR +G +D +L++ V +A DL++ Sbjct: 31 IYMALWRGWEDAAQGFKDYFANQGIPVELI-IRDAG--QDKAKLKEFVAEAKALKVDLVF 87 Query: 117 SWGTPTTLALAGKVDG--PAGDAIRDIPIVFTEVTDPVGAGLMRSLDHHESNVTGVSHVA 174 +WGT + + G++D PA I DIP VF V+ PVG G++ SL E N+TG ++ Sbjct: 88 TWGTTVSEEMLGRLDAVDPA-QHITDIPAVFAVVSQPVG-GVVPSLTSSERNITGTLYLV 145 Query: 175 PLPVQLNAIRSYRPFSRLGYLHNPAEPNSALVRAQLQQLAAQQKFEVESADIPLDARGEP 234 P+ Q+N I+SYRP RLG ++NP E NS + QL+ + F V + + ++ G+P Sbjct: 146 PMETQVNLIQSYRPLQRLGMVYNPLERNSQVAAEQLEGIGKATGFSVVALPVEVEG-GKP 204 Query: 235 DVQALPGLIRGMAERKVDFLYIGPSTLLAFTHRDLVTGAALQARLPTFCATESIVRRSGC 294 ++ + + +VDFLYI P T L +RDL+T AAL +PTF A E+ V S Sbjct: 205 KASSIAAKVAEIKAARVDFLYIPPDTFLN-VNRDLLTQAALDHAIPTFAAAENPVVTSKA 263 Query: 295 MFGLFSNGANTGRYAAAKAMQILVQHIPAQRIPASTLQRFSLLINMRTAQGLDLYPPMLL 354 MFG G+ A KA QILV+ I + IP +R S+LINM + + L+PPM L Sbjct: 264 MFGGVYRYYTVGQLTAYKAEQILVRKIAPKDIPIDAPKRLSVLINMPVVRQIGLFPPMKL 323 Query: 355 LNIAEVI 361 + +AE+I Sbjct: 324 MGLAEII 330