BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2802.p         (269 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775994.1| phytoene synthase [Herbaspirillum seropedica...   426   e-117
ref|YP_001353219.1| squalene/phytoene synthase protein [Janthino...   372   e-101
ref|YP_001100036.1| putative terpenoid synthase-related protein ...   372   e-101
emb|CAL61911.2| putative phytoene synthase CrtB-like [Herminiimo...   372   e-101
gb|ADU90691.1| putative phytoene/squalene synthase [Collimonas s...   367   e-100

>ref|YP_003775994.1| phytoene synthase [Herbaspirillum seropedicae SmR1]
 gb|ADJ64086.1| phytoene synthase protein [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 216/268 (80%), Positives = 231/268 (86%)

Query: 1   MAVDHYENFPVASLLLPARLRPAVTAIYAFARSADDIADEGDARPEERLAALHAYDAQLD 60
           MAVDHYENFPVASLLLPARLRPAVT IYAFARSADDIADEGDA PEERLA LHAY+AQLD
Sbjct: 1   MAVDHYENFPVASLLLPARLRPAVTDIYAFARSADDIADEGDAAPEERLAGLHAYEAQLD 60

Query: 61  LIEQQLPCTHPIFKRLQQIIAGHALPLQPFRDLLSAFRQDVVTTRYPHYSDLLDYCRRSA 120
           LI +Q PC  P+F+RL+  IA H LPLQP RDLLSAFRQDVVTTRY HY+DLLDYCRRSA
Sbjct: 61  LIARQQPCATPMFERLRHTIARHELPLQPLRDLLSAFRQDVVTTRYEHYTDLLDYCRRSA 120

Query: 121 NPVGTLMLHLYGEANEENLQDSAAICSALQLINFWQDVAIDWQKTRIYLPLEDLERFGIN 180
           NPVGTLMLHLYG A+EENL+DS AICSALQLINFWQD+AIDWQK RIYLPLEDL RFG+ 
Sbjct: 121 NPVGTLMLHLYGAASEENLRDSDAICSALQLINFWQDIAIDWQKQRIYLPLEDLARFGVT 180

Query: 181 ENDIAQACSDQRWQQLMQFEVTRARELMLSGAPLVRRLPGRIGLELRMVVQGGLRILERI 240
             DIA    D RWQQLM+FEV RAR LML+GAPL +RLPGRIG ELR+VVQGGLRIL RI
Sbjct: 181 PEDIAAGRCDGRWQQLMRFEVERARALMLAGAPLAKRLPGRIGWELRLVVQGGLRILARI 240

Query: 241 EAVQGDVFRQRPKLGKPDWLIIGWRGLT 268
           E VQGDVF  RPKLGK DWL +G R LT
Sbjct: 241 ERVQGDVFGHRPKLGKADWLAVGGRALT 268


>ref|YP_001353219.1| squalene/phytoene synthase protein [Janthinobacterium sp.
           Marseille]
 gb|ABR88842.1| squalene/phytoene synthase protein [Janthinobacterium sp.
           Marseille]
          Length = 291

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 191/267 (71%), Positives = 219/267 (82%)

Query: 1   MAVDHYENFPVASLLLPARLRPAVTAIYAFARSADDIADEGDARPEERLAALHAYDAQLD 60
           M+VDHYENFPVAS+LLPARLRPAV  IYAFARSADD+ADEG+A P+ERLAAL AY+ QLD
Sbjct: 20  MSVDHYENFPVASILLPARLRPAVEVIYAFARSADDLADEGNATPDERLAALAAYEQQLD 79

Query: 61  LIEQQLPCTHPIFKRLQQIIAGHALPLQPFRDLLSAFRQDVVTTRYPHYSDLLDYCRRSA 120
            IE        +F++L Q+IA + LPLQPFRDLLSAF+QDVVTTRY  ++DLLDYCRRSA
Sbjct: 80  QIEAGTTADTALFRKLAQVIAEYHLPLQPFRDLLSAFKQDVVTTRYAGFNDLLDYCRRSA 139

Query: 121 NPVGTLMLHLYGEANEENLQDSAAICSALQLINFWQDVAIDWQKTRIYLPLEDLERFGIN 180
           NPVGTLMLHLYG AN  NL++S  ICSALQLINFWQDVAIDWQK RIYLP +DL++F I 
Sbjct: 140 NPVGTLMLHLYGAANAGNLRESDDICSALQLINFWQDVAIDWQKERIYLPQQDLQKFNIA 199

Query: 181 ENDIAQACSDQRWQQLMQFEVTRARELMLSGAPLVRRLPGRIGLELRMVVQGGLRILERI 240
           E  IAQ   D  W+QLMQFEV RAR ++LSGAPL  RLPGRIG ELR+VVQGGLRILE +
Sbjct: 200 EQQIAQQTVDAAWRQLMQFEVQRARAMLLSGAPLALRLPGRIGWELRLVVQGGLRILECL 259

Query: 241 EAVQGDVFRQRPKLGKPDWLIIGWRGL 267
           EA   D+FRQRPKLGK DWL++  R +
Sbjct: 260 EASGYDMFRQRPKLGKSDWLLLLLRAI 286


>ref|YP_001100036.1| putative terpenoid synthase-related protein [Herminiimonas
           arsenicoxydans]
          Length = 284

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 191/267 (71%), Positives = 215/267 (80%)

Query: 1   MAVDHYENFPVASLLLPARLRPAVTAIYAFARSADDIADEGDARPEERLAALHAYDAQLD 60
           MAVDHYENFPVAS+LLPARLRPAV  IYAFARSADD+ADEGDA  EERLAAL AY+  LD
Sbjct: 7   MAVDHYENFPVASILLPARLRPAVEIIYAFARSADDVADEGDASAEERLAALTAYENGLD 66

Query: 61  LIEQQLPCTHPIFKRLQQIIAGHALPLQPFRDLLSAFRQDVVTTRYPHYSDLLDYCRRSA 120
            I        P+F+ L ++IA + LPLQPFRDLLSAF+QDV TTRY  +S LLDYCRRSA
Sbjct: 67  QIAAGQTPDTPLFRELAKVIADYHLPLQPFRDLLSAFKQDVSTTRYADFSLLLDYCRRSA 126

Query: 121 NPVGTLMLHLYGEANEENLQDSAAICSALQLINFWQDVAIDWQKTRIYLPLEDLERFGIN 180
           NPVGTLMLHLYG AN ENL+DS AICSALQLINFWQDVAID +K RIYLP ED++ F + 
Sbjct: 127 NPVGTLMLHLYGAANAENLRDSDAICSALQLINFWQDVAIDMRKARIYLPQEDMQTFRVG 186

Query: 181 ENDIAQACSDQRWQQLMQFEVTRARELMLSGAPLVRRLPGRIGLELRMVVQGGLRILERI 240
           E  IA    DQ W+ LMQFE++RAR +++SGAPL  RLPGRIG ELR+VVQGGLRILERI
Sbjct: 187 EEHIAGQRIDQAWRNLMQFEISRARSMLISGAPLALRLPGRIGWELRLVVQGGLRILERI 246

Query: 241 EAVQGDVFRQRPKLGKPDWLIIGWRGL 267
           EAV  DVFR RPKLGK DWL + WR +
Sbjct: 247 EAVDYDVFRHRPKLGKSDWLRLIWRAI 273


>emb|CAL61911.2| putative phytoene synthase CrtB-like [Herminiimonas arsenicoxydans]
          Length = 278

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 191/267 (71%), Positives = 215/267 (80%)

Query: 1   MAVDHYENFPVASLLLPARLRPAVTAIYAFARSADDIADEGDARPEERLAALHAYDAQLD 60
           MAVDHYENFPVAS+LLPARLRPAV  IYAFARSADD+ADEGDA  EERLAAL AY+  LD
Sbjct: 1   MAVDHYENFPVASILLPARLRPAVEIIYAFARSADDVADEGDASAEERLAALTAYENGLD 60

Query: 61  LIEQQLPCTHPIFKRLQQIIAGHALPLQPFRDLLSAFRQDVVTTRYPHYSDLLDYCRRSA 120
            I        P+F+ L ++IA + LPLQPFRDLLSAF+QDV TTRY  +S LLDYCRRSA
Sbjct: 61  QIAAGQTPDTPLFRELAKVIADYHLPLQPFRDLLSAFKQDVSTTRYADFSLLLDYCRRSA 120

Query: 121 NPVGTLMLHLYGEANEENLQDSAAICSALQLINFWQDVAIDWQKTRIYLPLEDLERFGIN 180
           NPVGTLMLHLYG AN ENL+DS AICSALQLINFWQDVAID +K RIYLP ED++ F + 
Sbjct: 121 NPVGTLMLHLYGAANAENLRDSDAICSALQLINFWQDVAIDMRKARIYLPQEDMQTFRVG 180

Query: 181 ENDIAQACSDQRWQQLMQFEVTRARELMLSGAPLVRRLPGRIGLELRMVVQGGLRILERI 240
           E  IA    DQ W+ LMQFE++RAR +++SGAPL  RLPGRIG ELR+VVQGGLRILERI
Sbjct: 181 EEHIAGQRIDQAWRNLMQFEISRARSMLISGAPLALRLPGRIGWELRLVVQGGLRILERI 240

Query: 241 EAVQGDVFRQRPKLGKPDWLIIGWRGL 267
           EAV  DVFR RPKLGK DWL + WR +
Sbjct: 241 EAVDYDVFRHRPKLGKSDWLRLIWRAI 267


>gb|ADU90691.1| putative phytoene/squalene synthase [Collimonas sp. MPS11E8]
          Length = 270

 Score =  367 bits (943), Expect = e-100,   Method: Composition-based stats.
 Identities = 182/267 (68%), Positives = 216/267 (80%)

Query: 1   MAVDHYENFPVASLLLPARLRPAVTAIYAFARSADDIADEGDARPEERLAALHAYDAQLD 60
           M+ +HYENFPVAS+L+PARLRPAV AIYAFARSADDIADEGDA P++RL AL+AY+A LD
Sbjct: 1   MSTNHYENFPVASILMPARLRPAVKAIYAFARSADDIADEGDASPDQRLRALNAYEAALD 60

Query: 61  LIEQQLPCTHPIFKRLQQIIAGHALPLQPFRDLLSAFRQDVVTTRYPHYSDLLDYCRRSA 120
            IEQQ     P+F  L ++I  + LPL PFRDLLSAF+QDV+TTRY  ++ LLDYCRRSA
Sbjct: 61  RIEQQQAAESPLFLALHEVITAYGLPLAPFRDLLSAFKQDVITTRYSQFAGLLDYCRRSA 120

Query: 121 NPVGTLMLHLYGEANEENLQDSAAICSALQLINFWQDVAIDWQKTRIYLPLEDLERFGIN 180
           NPVG LMLHLYG A+E+NL+DS AICSALQLINFWQDVAIDW K RIYLPLEDL+RFG++
Sbjct: 121 NPVGALMLHLYGAASEQNLRDSDAICSALQLINFWQDVAIDWDKARIYLPLEDLQRFGVS 180

Query: 181 ENDIAQACSDQRWQQLMQFEVTRARELMLSGAPLVRRLPGRIGLELRMVVQGGLRILERI 240
           +  +A    D  W++LM+FEV RAR +M     L  RLPGRIG ELR+VVQGGLRILE +
Sbjct: 181 QAQLADGAVDHAWRRLMEFEVQRARAMMTGAQALALRLPGRIGWELRLVVQGGLRILELL 240

Query: 241 EAVQGDVFRQRPKLGKPDWLIIGWRGL 267
           E+ Q D+FRQRPKL K DWL++ WR L
Sbjct: 241 ESAQYDMFRQRPKLHKADWLLLAWRAL 267