BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2801.p (279 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775995.1| signal transduction protein [Herbaspirillum ... 529 e-148 gb|EGW60923.1| putative signal transduction protein [Dechlorosom... 285 7e-75 ref|YP_003847737.1| putative signal transduction protein [Gallio... 278 8e-73 ref|YP_003168639.1| putative signal transduction protein [Candid... 265 7e-69 ref|YP_284375.1| putative signal transduction protein [Dechlorom... 228 6e-58 >ref|YP_003775995.1| signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ64087.1| signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 279 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 269/279 (96%), Positives = 276/279 (98%) Query: 1 MDRLEIFRNIASQAGRGELVFPANVSASLKLQKALADPECHLELAAKLVMAEPLVSARTV 60 MDRLEIFRNIASQAGRGELVFPANVSAS+KLQKALADP+CHLELAAKLVMAEPLVSARTV Sbjct: 1 MDRLEIFRNIASQAGRGELVFPANVSASIKLQKALADPDCHLELAAKLVMAEPLVSARTV 60 Query: 61 AIANSAAYNRSGGEINNVRAAVMRLGFRTLNTITTSVIVRQLGRTINNPGMRIKSAQLWE 120 AIANSAAYNRSGGEINNVRAAVMRLGFRTLNTITTSVIVRQLGRTINNPGMRIKSAQLWE Sbjct: 61 AIANSAAYNRSGGEINNVRAAVMRLGFRTLNTITTSVIVRQLGRTINNPGMRIKSAQLWE 120 Query: 121 HCAHVAATAYVLTSKLTKADPETAMFAGIVHEVGGFYLLSRTDDFPGLLDGGTEDWMEYG 180 HCAHVAATAYVLT+KLTKADPETAMFAGIVHEVGGFYLLSRTDDFPGLLDGGTEDWMEYG Sbjct: 121 HCAHVAATAYVLTAKLTKADPETAMFAGIVHEVGGFYLLSRTDDFPGLLDGGTEDWMEYG 180 Query: 181 EKMIGRAVLKKLGVPQPVVDAIESLWHGVRVLPPQTIGDVLLLAKELSPVPSPLARTAVA 240 EKMIGRAVLKKLGVPQPVVDAIESLWHGVRVLPPQTIGDVLLLAKELSPVPSPL R+ VA Sbjct: 181 EKMIGRAVLKKLGVPQPVVDAIESLWHGVRVLPPQTIGDVLLLAKELSPVPSPLQRSVVA 240 Query: 241 EAGVGGESLVDDYIGDRSLREMLDDSEEQIRTLTAALLV 279 EAGVGGE+LVDDYIGD SLRE+LDDSEEQIR+LTAALLV Sbjct: 241 EAGVGGENLVDDYIGDHSLRELLDDSEEQIRSLTAALLV 279 >gb|EGW60923.1| putative signal transduction protein [Dechlorosoma suillum PS] Length = 284 Score = 285 bits (728), Expect = 7e-75, Method: Composition-based stats. Identities = 145/282 (51%), Positives = 200/282 (70%), Gaps = 5/282 (1%) Query: 1 MDRLEIFRNIASQAGRGELVFPANVSASLKLQKALADPECHLELAAKLVMAEPLVSARTV 60 MD+LE+F +A+ G GEL FP + ++K+++AL DPECH+E AA LV AEPL++AR V Sbjct: 1 MDKLEVFNTLAAGVGHGELAFPTSAQVAIKVRQALDDPECHIEAAAHLVQAEPLLAARVV 60 Query: 61 AIANSAAYNRSGGEINNVRAAVMRLGFRTLNTITTSVIVRQLGRTINNPGMRIKSAQLWE 120 A+ANS YNR+G + +VR AV RLGFRT+ + ++I RQL + ++P ++ +AQLW+ Sbjct: 61 AMANSVTYNRAGNPVTDVRTAVARLGFRTVRALAMALITRQLSGSPSDPALQAMAAQLWQ 120 Query: 121 HCAHVAATAYVLTSKLTKADPETAMFAGIVHEVGGFYLLSRTDDFPGLLDGGTEDWMEYG 180 H AHVAA A+V+ ++TK D ETAMFAGIVHEVGGFYLLS+ PGLLDG + WME G Sbjct: 121 HTAHVAALAHVIARRVTKVDGETAMFAGIVHEVGGFYLLSQAKRQPGLLDGDFDAWMEGG 180 Query: 181 EKMIGRAVLKKLGVPQPVVDAIESLWHGVRVLPPQTIGDVLLLAKELSPVPSPLAR---- 236 E ++GRAVL+ L VP PV++AIE+ W G +PP ++GD LLLA+EL PVPSPL R Sbjct: 181 EMILGRAVLQVLEVPAPVLEAIEAYWDGFLAIPPHSLGDTLLLAEELCPVPSPLHRFNSR 240 Query: 237 -TAVAEAGVGGESLVDDYIGDRSLREMLDDSEEQIRTLTAAL 277 A A +GG +D +G+ +L +L ++ E++ +LT AL Sbjct: 241 GAAPGSADIGGSGNLDMVLGEETLSGILAEAAEEVGSLTGAL 282 >ref|YP_003847737.1| putative signal transduction protein [Gallionella capsiferriformans ES-2] gb|ADL55973.1| putative signal transduction protein [Gallionella capsiferriformans ES-2] Length = 283 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 137/277 (49%), Positives = 195/277 (70%) Query: 1 MDRLEIFRNIASQAGRGELVFPANVSASLKLQKALADPECHLELAAKLVMAEPLVSARTV 60 M++ EIF+ IA GEL FP +LKL++AL DP+C L++AA+L+ AEPL++AR + Sbjct: 5 MNKREIFKQIALDIAEGELAFPTGAQLALKLRQALDDPDCSLDVAARLIQAEPLLAARVI 64 Query: 61 AIANSAAYNRSGGEINNVRAAVMRLGFRTLNTITTSVIVRQLGRTINNPGMRIKSAQLWE 120 AIANS YNRSG EI++V AVMRLGF + ++ +++ RQ+ +P R QLW+ Sbjct: 65 AIANSVLYNRSGHEISDVEIAVMRLGFNVVRSLVMALVARQMAGVSTDPRHRELVDQLWQ 124 Query: 121 HCAHVAATAYVLTSKLTKADPETAMFAGIVHEVGGFYLLSRTDDFPGLLDGGTEDWMEYG 180 H AHVAA A V+ +T +PETAMFAGI+HE+GGFY+LSR D+FPGLL+G DWM+YG Sbjct: 125 HTAHVAALAQVVARHVTLQNPETAMFAGIIHEIGGFYMLSRADEFPGLLEGDFSDWMDYG 184 Query: 181 EKMIGRAVLKKLGVPQPVVDAIESLWHGVRVLPPQTIGDVLLLAKELSPVPSPLARTAVA 240 E+MIGRAVLKKL +P+ V+D ++ W G LPP+T+ D LLLA+EL+PV SPL + Sbjct: 185 EEMIGRAVLKKLSIPEAVLDEMDVFWEGFLALPPETMADTLLLAEELTPVTSPLHQLDGM 244 Query: 241 EAGVGGESLVDDYIGDRSLREMLDDSEEQIRTLTAAL 277 AG + ++ IG+ +L +L+++ E++ +L+ AL Sbjct: 245 AAGQMQTAQIEMVIGEETLSRILNEAMEEVGSLSQAL 281 >ref|YP_003168639.1| putative signal transduction protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV36710.1| putative signal transduction protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 277 Score = 265 bits (676), Expect = 7e-69, Method: Composition-based stats. Identities = 142/277 (51%), Positives = 193/277 (69%), Gaps = 2/277 (0%) Query: 1 MDRLEIFRNIASQAGRGELVFPANVSASLKLQKALADPECHLELAAKLVMAEPLVSARTV 60 M+R EI R IA++ RGE+ FP + ++KLQ+AL DP+C ++ A +L+ AEPL++AR V Sbjct: 1 MERYEILRKIAAELERGEVSFPTHALVAMKLQRALGDPDCQVDEATRLIKAEPLLAARVV 60 Query: 61 AIANSAAYNRSGGEINNVRAAVMRLGFRTLNTITTSVIVRQLGRTINNPGMRIKSAQLWE 120 A+ANS A+ SG I +VR+AV+RLGFR L ++ T+V+ RQL T + ++ +A+LWE Sbjct: 61 ALANSTAFGASGRAITDVRSAVLRLGFRYLRSLATAVVTRQLAVTTSAADRQL-AARLWE 119 Query: 121 HCAHVAATAYVLTSKLTKADPETAMFAGIVHEVGGFYLLSRTDDFPGLLDGGTEDWMEYG 180 H AHVAA A+V+ K+T DPETAMFAGIVHEVG FYL+SR ++PGLLD W E G Sbjct: 120 HTAHVAALAHVIARKVTHLDPETAMFAGIVHEVGAFYLISRAGEYPGLLDEDFSAWTETG 179 Query: 181 EKMIGRAVLKKLGVPQPVVDAIESLWHGVRVLPPQTIGDVLLLAKELSPVPSPLARTAVA 240 E +GRAVLK L VPQ V+DAIE W G +PP ++GD LLLA EL+PV SPL R Sbjct: 180 EADVGRAVLKALSVPQAVIDAIEVCWQGFLAMPPTSLGDTLLLADELAPVESPL-RDLDG 238 Query: 241 EAGVGGESLVDDYIGDRSLREMLDDSEEQIRTLTAAL 277 G + +D IG+ +L E++ +S E +++LTAAL Sbjct: 239 CPREGMAASIDMLIGEETLSEIMQESAEDVQSLTAAL 275 >ref|YP_284375.1| putative signal transduction protein [Dechloromonas aromatica RCB] gb|AAZ45905.1| putative signal transduction protein [Dechloromonas aromatica RCB] Length = 278 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 123/280 (43%), Positives = 178/280 (63%), Gaps = 7/280 (2%) Query: 1 MDRLEIFRNIASQAGRGELVFPANVSASLKLQKALADPECHLELAAKLVMAEPLVSARTV 60 MD +F IA A RGE+VFP + L +++ L DP+C E KL+ AEP++SA+ V Sbjct: 1 MDVKAVFEKIAGDASRGEMVFPTHAEIDLLVRRKLDDPDCSTEQLGKLIAAEPILSAKVV 60 Query: 61 AIANSAAYNRSGGEINNVRAAVMRLGFRTLNTITTSVIVRQLGRTINNPGMRIKSAQLWE 120 A+ANS AYN S I++VR+A+ RLGF TL T+ T+++VRQ+ P + + +LWE Sbjct: 61 AMANSVAYNPSVRGISDVRSAISRLGFNTLRTLVTALLVRQMQGMSKLPEHQALARRLWE 120 Query: 121 HCAHVAATAYVLTSKLTKADPETAMFAGIVHEVGGFYLLSRTDDFPGLLDGGTEDWMEYG 180 H A VA+ A V+ ++T+ DPE A FAGIVHEVGGFYL+SR +FP L E W + G Sbjct: 121 HTAQVASLARVIARRVTRQDPEAAFFAGIVHEVGGFYLISRAAEFPELFQNNLEAWSDEG 180 Query: 181 EKMIGRAVLKKLGVPQPVVDAIESLWHGVRVLPPQTIGDVLLLAKELSPVPSPLARTAVA 240 E ++GRAVL LGVP + DA+E+LW G +P +++GD LLLA +L+ + SPL Sbjct: 181 EALVGRAVLNTLGVPAAIRDALETLWDGYLAMPAESLGDTLLLADQLASIESPLLEL--- 237 Query: 241 EAGVGGESLVDDY---IGDRSLREMLDDSEEQIRTLTAAL 277 +G+G + + D + +L +L DS E++ +LT+ L Sbjct: 238 -SGMGCKGMAADINLQVDGDTLSAILLDSAEEVESLTSLL 276