BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2799.p (443 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775997.1| squalene/phytoene dehydrogenase; carotene 7,... 668 0.0 gb|ADU90689.1| putative squalene/phytoene dehydrogenase [Collimo... 489 e-136 ref|YP_001353217.1| hypothetical protein mma_1527 [Janthinobacte... 484 e-134 ref|YP_001100038.1| putative squalene/phytoene dehydrogenase; ca... 481 e-134 ref|YP_004753098.1| phytoene desaturase [Collimonas fungivorans ... 466 e-129 >ref|YP_003775997.1| squalene/phytoene dehydrogenase; carotene 7,8-desaturase [Herbaspirillum seropedicae SmR1] gb|ADJ64089.1| squalene/phytoene dehydrogenase; carotene 7,8-desaturase protein [Herbaspirillum seropedicae SmR1] Length = 443 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 384/443 (86%), Positives = 410/443 (92%) Query: 1 MHNAPRHHAVIGAGWAGCAAAVALAAGGHRVSLFEAARTLGGRARRVELDEHVLDNGQHI 60 M NAPRH+AVIGAGWAGCAAAVALAAGGHRVSLFEAARTLGGRARRVEL+E V+DNGQHI Sbjct: 1 MSNAPRHYAVIGAGWAGCAAAVALAAGGHRVSLFEAARTLGGRARRVELEERVVDNGQHI 60 Query: 61 LLGAYRSTLALMKQVGVDPACALLRLPLQMRYPLATGAEGMDFVAPRLPAPWHVAVALLR 120 LLGAYR+TLALMKQVGVD A ALLRLPLQMRYPL AEGMDFVAPRLPAPWHVAVALLR Sbjct: 61 LLGAYRATLALMKQVGVDSASALLRLPLQMRYPLQGNAEGMDFVAPRLPAPWHVAVALLR 120 Query: 121 AKGLQREDKMALARFSTTARWMGWQLHQDCSVAELLERYEQTARLIRLMWRPLCIAALNT 180 AKGL REDKMALARFSTTARWMGWQLHQDCSV+ELL R++QT R+IRLMWRPLCIAALNT Sbjct: 121 AKGLTREDKMALARFSTTARWMGWQLHQDCSVSELLARFDQTPRVIRLMWRPLCIAALNT 180 Query: 181 APERASAQVFLNVLRDSLGARRAASDMLIPRVDLSALLPDAAAAYLGKRGGLVQTGVAVA 240 PERASAQVFLNVLRDSLGARRAASDMLIPR+DLSALLPDAAAAYL KRGGLVQ GVAVA Sbjct: 181 PPERASAQVFLNVLRDSLGARRAASDMLIPRLDLSALLPDAAAAYLAKRGGLVQAGVAVA 240 Query: 241 RLMPGNDEGNWRLEDRAGESLGEFAGVVLATGPDAAAQLLEGLHDTALLQALEHEPITTC 300 L+PG + WRL+DRAGESLGEFAGVVLATGP+AAAQLL+GLHDT+ L++L+HEPITTC Sbjct: 241 HLLPGQQDTTWRLQDRAGESLGEFAGVVLATGPEAAAQLLQGLHDTSRLESLQHEPITTC 300 Query: 301 YLQYPSGVRLPAPFLALADDPQRQAWGQFVFDRGQLGGDAGLLAVVVSAAGQAIADGHAA 360 YL YP G RLPAPFLALADDPQRQAWGQFVFDRGQLGG+AGLLAVVVSAAGQAIADG AA Sbjct: 301 YLHYPQGARLPAPFLALADDPQRQAWGQFVFDRGQLGGEAGLLAVVVSAAGQAIADGQAA 360 Query: 361 LSAGITRQLANDFGDAALATPGWSRIITEKRATFACTPGLQRPDNTGMPAGLALAGDYVA 420 L+ G+TRQLA+DF D LATPGWSR+ITEKRATFACTPGL RPD+ +PAGLALAGDYVA Sbjct: 361 LTEGVTRQLASDFADPTLATPGWSRVITEKRATFACTPGLVRPDSADLPAGLALAGDYVA 420 Query: 421 GDYPATLEGAVRSGMAAARLLAA 443 GDYPATLEGAVRS MAAAR +A Sbjct: 421 GDYPATLEGAVRSAMAAARRVAG 443 >gb|ADU90689.1| putative squalene/phytoene dehydrogenase [Collimonas sp. MPS11E8] Length = 444 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 274/440 (62%), Positives = 331/440 (75%), Gaps = 10/440 (2%) Query: 6 RHHAVIGAGWAGCAAAVALAAGGHRVSLFEAARTLGGRARRVELDEHVLDNGQHILLGAY 65 +H AVIGAGWAGC AAV L GH+V+LFEA+R LGGRARRV++ E VLDNGQHILLGAY Sbjct: 6 QHIAVIGAGWAGCTAAVELTQAGHQVTLFEASRQLGGRARRVDIGETVLDNGQHILLGAY 65 Query: 66 RSTLALMKQVGVDPACALLRLPLQMRYPLATGAEGMDFVAPRLPAPWHVAVALLRAKGLQ 125 + +L +M++VG+ P A+LRLPLQM YP +G GM F APRLPAP H+ VAL RA GLQ Sbjct: 66 KQSLQMMRKVGMAPEQAMLRLPLQMNYPAGSG--GMTFSAPRLPAPLHLLVALWRADGLQ 123 Query: 126 REDKMALARFSTTARWMGWQLHQDCSVAELLERYEQTARLIRLMWRPLCIAALNTAPERA 185 REDK+ALARFS+ ARWM W+L+ DCSV+ LLER++QT RLI+LMWRPLCIAALNT PE+A Sbjct: 124 REDKLALARFSSAARWMDWRLNDDCSVSTLLERFDQTERLIQLMWRPLCIAALNTRPEQA 183 Query: 186 SAQVFLNVLRDSLGARRAASDMLIPRVDLSALLPDAAAAYLGKRGGLVQTGVAVARLMPG 245 SAQVFL VLRDSLGARR+ASDML+PR DLS+L P AAA++ +RGG +++G ++ ++ Sbjct: 184 SAQVFLAVLRDSLGARRSASDMLLPRRDLSSLFPQQAAAFIEERGGSLESGHSIRQVR-- 241 Query: 246 NDEGNWRLEDRAGESLGEFAGVVLATGPDAAAQLLEGLHDTALLQALE---HEPITTCYL 302 D W+L+ + ++ F VV+AT P++AA LLEG + LL AL +EPITTCYL Sbjct: 242 RDGQQWQLQ--SSDASQNFDAVVIATPPESAATLLEGSAELELLSALRSFAYEPITTCYL 299 Query: 303 QYPSGVRLPAPFLALADDPQRQAWGQFVFDRGQLG-GDAGLLAVVVSAAGQAIADGHAAL 361 QY S RLP PF AL DDP AWGQFVFDRGQL AGLLAVV+SA+ +AI DGH AL Sbjct: 300 QYASSTRLPQPFYALLDDPDHAAWGQFVFDRGQLDPAQAGLLAVVISASSEAIVDGHQAL 359 Query: 362 SAGITRQLANDFGDAALATPGWSRIITEKRATFACTPGLQRPDNTGMPAGLALAGDYVAG 421 + + Q+A F LA P W+++I+EKRATFACTPGL RP N L LAGDY A Sbjct: 360 GSAVAAQIATAFKQTQLAQPLWTQVISEKRATFACTPGLARPANDSGLEKLMLAGDYTAS 419 Query: 422 DYPATLEGAVRSGMAAARLL 441 DYPATLE AVRSG AAR L Sbjct: 420 DYPATLESAVRSGQQAAREL 439 >ref|YP_001353217.1| hypothetical protein mma_1527 [Janthinobacterium sp. Marseille] gb|ABR89194.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 443 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 277/437 (63%), Positives = 321/437 (73%), Gaps = 10/437 (2%) Query: 9 AVIGAGWAGCAAAVALAAGGHRVSLFEAARTLGGRARRVELDEHVLDNGQHILLGAYRST 68 AVIGAGWAGC+AAV LA+ GH V+LFE++RTLGGRAR VE+ + LDNGQHILLGAY +T Sbjct: 8 AVIGAGWAGCSAAVELASAGHAVTLFESSRTLGGRARAVEIQDQTLDNGQHILLGAYSAT 67 Query: 69 LALMKQVGVDPACALLRLPLQMRYPLATGAEGMDFVAPRLPAPWHVAVALLRAKGLQRED 128 L L+K +GV+ ALLRLPLQMRYP G +GMDFVAPRLPAP H+ ALLRAKGL D Sbjct: 68 LNLLKTLGVNADQALLRLPLQMRYP--AGCDGMDFVAPRLPAPLHLLTALLRAKGLDAAD 125 Query: 129 KMALARFSTTARWMGWQLHQDCSVAELLERYEQTARLIRLMWRPLCIAALNTAPERASAQ 188 KMALARFSTTARWM W+LH DCSV ELLERY+QTARLI+LMW+PLCIAALNT PERASAQ Sbjct: 126 KMALARFSTTARWMEWRLHNDCSVTELLERYDQTARLIKLMWQPLCIAALNTPPERASAQ 185 Query: 189 VFLNVLRDSLGARRAASDMLIPRVDLSALLPDAAAAYLGKRGGLVQTGVAVARLMPGNDE 248 VFLNVLRDSLGA+RAASDMLIPR DL++LLP AAA++ + G V+TG AV + + Sbjct: 186 VFLNVLRDSLGAKRAASDMLIPRTDLTSLLPQQAAAFVERHQGTVKTGAAVQSIHAHGQQ 245 Query: 249 GNWRL---EDRAGESLGEFAGVVLATGPDAAAQLLEGLHDTALLQALEHEPITTCYLQYP 305 W L + A E L F G+ +AT AA +L G A + A +E ITTCYLQYP Sbjct: 246 --WTLGLSNEEAAEEL--FDGLAIATPALTAANMLAGTEAEAHIPAFNYEAITTCYLQYP 301 Query: 306 SGVRLPAPFLALADDPQRQAWGQFVFDRGQLGGDA-GLLAVVVSAAGQAIADGHAALSAG 364 +G RLPAPF AL DD + WGQFVFDRGQL + GL AVVVS + A G ALS Sbjct: 302 AGTRLPAPFFALTDDAAQGQWGQFVFDRGQLDANQDGLFAVVVSISTAATELGQDALSVA 361 Query: 365 ITRQLANDFGDAALATPGWSRIITEKRATFACTPGLQRPDNTGMPAGLALAGDYVAGDYP 424 I +QLA LA WS++ITEKRATF+CTPGLQRP+ L +AGDY+A DYP Sbjct: 362 IAQQLAQALEMPQLAQASWSKVITEKRATFSCTPGLQRPEEQTALPHLVVAGDYLASDYP 421 Query: 425 ATLEGAVRSGMAAARLL 441 ATLE AVRSG+ AA LL Sbjct: 422 ATLESAVRSGVKAANLL 438 >ref|YP_001100038.1| putative squalene/phytoene dehydrogenase; carotene 7,8-desaturase [Herminiimonas arsenicoxydans] emb|CAL61913.1| Conserved hypothetical protein, putative phytoene dehydrogenase [Herminiimonas arsenicoxydans] Length = 449 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 271/434 (62%), Positives = 316/434 (72%), Gaps = 6/434 (1%) Query: 9 AVIGAGWAGCAAAVALAAGGHRVSLFEAARTLGGRARRVELDEHVLDNGQHILLGAYRST 68 AVIGAGWAGC AAV LA GH+V+L+E++RTLGGRAR VE+ +LDNGQHILLGAY + Sbjct: 13 AVIGAGWAGCTAAVELARAGHQVTLYESSRTLGGRARAVEMQGKILDNGQHILLGAYAES 72 Query: 69 LALMKQVGVDPACALLRLPLQMRYPLATGAEGMDFVAPRLPAPWHVAVALLRAKGLQRED 128 L L K +G+D ALLRLPLQMRYP G +GMDF+APRLPAP H+ VALLRAKGL D Sbjct: 73 LRLFKMLGIDTDQALLRLPLQMRYP--AGCDGMDFIAPRLPAPLHLLVALLRAKGLSGSD 130 Query: 129 KMALARFSTTARWMGWQLHQDCSVAELLERYEQTARLIRLMWRPLCIAALNTAPERASAQ 188 KMALARFS+ ARWM WQL+ DCSV+ELL R++QT RLI+LMW+PLCIAALNT PERASAQ Sbjct: 131 KMALARFSSAARWMDWQLNTDCSVSELLHRFDQTERLIKLMWQPLCIAALNTPPERASAQ 190 Query: 189 VFLNVLRDSLGARRAASDMLIPRVDLSALLPDAAAAYLGKRGGLVQTGVAVARLMPGNDE 248 +FLNVLRDSLGARR ASDMLIPRVDL+ L P AA ++ + GG ++TG V ++ ND Sbjct: 191 IFLNVLRDSLGARRVASDMLIPRVDLTTLFPQQAANFVVQHGGTIKTGATVQKI--ANDN 248 Query: 249 GNWRLEDRAGESLGEFAGVVLATGPDAAAQLLEGLHDTALLQALEHEPITTCYLQYPSGV 308 W + E E+ V++AT AA LL + A + A E+E ITTCYLQYP+ Sbjct: 249 RKWSVMLDKTED-AEYDAVIVATSATQAAILLADVTMNAAIPAFEYEAITTCYLQYPADT 307 Query: 309 RLPAPFLALADDPQRQAWGQFVFDRGQLG-GDAGLLAVVVSAAGQAIADGHAALSAGITR 367 L PF AL DD WGQFVFDRGQL +GLLAVVVS + AI GH ALSA I Sbjct: 308 HLALPFHALTDDADSGCWGQFVFDRGQLDHTQSGLLAVVVSTSTSAIDIGHEALSAAIAA 367 Query: 368 QLANDFGDAALATPGWSRIITEKRATFACTPGLQRPDNTGMPAGLALAGDYVAGDYPATL 427 QLA+ ALA P WSRII+EKRATF+CTPGLQRP LA+AGDY+A DYPATL Sbjct: 368 QLAHALQMPALAHPEWSRIISEKRATFSCTPGLQRPQEKTEFPHLAIAGDYLASDYPATL 427 Query: 428 EGAVRSGMAAARLL 441 E AVRSG+ AA LL Sbjct: 428 ESAVRSGVKAASLL 441 >ref|YP_004753098.1| phytoene desaturase [Collimonas fungivorans Ter331] gb|AEK62275.1| Phytoene desaturase, pro-zeta-carotene producing [Collimonas fungivorans Ter331] Length = 481 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 281/452 (62%), Positives = 340/452 (75%), Gaps = 13/452 (2%) Query: 1 MHNAPRHHAVIGAGWAGCAAAVALAAGGHRVSLFEAARTLGGRARRVELDEHVLDNGQHI 60 M + AVIGAGWAGC+AAV L GH+V+LFEA+R LGGRARRV+++E +LDNGQHI Sbjct: 24 MATEAQQVAVIGAGWAGCSAAVELTEAGHQVTLFEASRQLGGRARRVDINETILDNGQHI 83 Query: 61 LLGAYRSTLALMKQVGVDPACALLRLPLQMRYPLATGAEGMDFVAPRLPAPWHVAVALLR 120 LLGAY TL +M++VG+DPA A+LRLPLQM YP +G GM FVAPRLPAP H+ ALLR Sbjct: 84 LLGAYSQTLQMMRKVGIDPASAMLRLPLQMCYPAGSG--GMTFVAPRLPAPLHLLAALLR 141 Query: 121 AKGLQREDKMALARFSTTARWMGWQLHQDCSVAELLERYEQTARLIRLMWRPLCIAALNT 180 A GLQR+DK+ALARFS+ ARWMGWQLH DCSV+ LLER++QT RLI+LMWRPLCIAALNT Sbjct: 142 ADGLQRQDKLALARFSSAARWMGWQLHDDCSVSTLLERFDQTERLIQLMWRPLCIAALNT 201 Query: 181 APERASAQVFLNVLRDSLGARRAASDMLIPRVDLSALLPDAAAAYLGKRGGLVQTGVAVA 240 P +ASAQVFL VLRDSLGARR+ASDML+PR DLS L P AAA++ +RGG V++G ++ Sbjct: 202 PPAQASAQVFLAVLRDSLGARRSASDMLLPRTDLSNLFPQQAAAFIEERGGNVESGHSIR 261 Query: 241 RLMPGNDE-GNWRLEDRAGESLGEFAGVVLATGPDAAAQLLEGLHDTALLQAL---EHEP 296 +L + + G W+L+ +G + +F V++AT P+ AA LL+G D ALL L ++EP Sbjct: 262 QLQRSDGQNGRWQLQ--SGAASMDFDAVIIATPPETAATLLDGSADAALLTTLRSFDYEP 319 Query: 297 ITTCYLQYPSGVRLPAPFLALADDPQR----QAWGQFVFDRGQLG-GDAGLLAVVVSAAG 351 ITTCYLQY + RLP PFLAL DDP+ AWGQFVFDRGQL AGLLAVV+SA+ Sbjct: 320 ITTCYLQYAADTRLPRPFLALLDDPENAGGSAAWGQFVFDRGQLDPSQAGLLAVVISASS 379 Query: 352 QAIADGHAALSAGITRQLANDFGDAALATPGWSRIITEKRATFACTPGLQRPDNTGMPAG 411 +AI GH AL+ + QLA F LA+P WS++I+EKRATFACTPGL RP N Sbjct: 380 EAIQAGHEALAQAVAAQLAAAFKQPQLASPSWSQVISEKRATFACTPGLARPANDTGLDK 439 Query: 412 LALAGDYVAGDYPATLEGAVRSGMAAARLLAA 443 L LAGDY A DYPATLE AVRSG AA+ L A Sbjct: 440 LLLAGDYTASDYPATLESAVRSGRQAAQELLA 471