BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2793.p (182 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776001.1| response regulator consisting of a CheY-like... 289 1e-76 ref|YP_001901261.1| two component Fis family transcriptional reg... 224 5e-57 emb|CCA80829.1| putative response regulator/transcriptional regu... 223 1e-56 ref|YP_003753947.1| Fis family transcriptional regulator [Ralsto... 222 2e-56 emb|CCA88329.1| putative response regulator/transcriptional regu... 221 3e-56 >ref|YP_003776001.1| response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Herbaspirillum seropedicae SmR1] gb|ADJ64093.1| response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain, protein [Herbaspirillum seropedicae SmR1] Length = 182 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 164/182 (90%), Positives = 168/182 (92%) Query: 1 MSAAFLILDDNDVFASTLARSLARRGFRAVVAHTGEEALDAARRERFDYVTIDLQLEKDS 60 MSAAFLILDDNDVFA TLARSLARRGFRA VAH+GE AL+AARRERFDY TIDLQLEKDS Sbjct: 1 MSAAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDS 60 Query: 61 GLQWVGPLRQALPEARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSYVAEG 120 GLQWV PLRQALP ARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALS+ G Sbjct: 61 GLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGNG 120 Query: 121 DAVDEPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 + E LPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV Sbjct: 121 EQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 Query: 181 AR 182 AR Sbjct: 181 AR 182 >ref|YP_001901261.1| two component Fis family transcriptional regulator [Ralstonia pickettii 12J] ref|YP_002983324.1| two component Fis family transcriptional regulator [Ralstonia pickettii 12D] ref|ZP_07674981.1| response regulator [Ralstonia sp. 5_7_47FAA] gb|ACD28829.1| two component transcriptional regulator, Fis family [Ralstonia pickettii 12J] gb|ACS64652.1| two component transcriptional regulator, Fis family [Ralstonia pickettii 12D] gb|EFP66579.1| response regulator [Ralstonia sp. 5_7_47FAA] Length = 192 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 130/191 (68%), Positives = 145/191 (75%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFASTLARSLARRGFRAVVAHTGEEALDAARRERFDYVTIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AHTG EAL AR+ RF YVT+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALALARQTRFSYVTVDLHLAASDKG 64 Query: 58 ------KDSGLQWVGPLRQALPEARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W+ PLRQALPEAR+L+LTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLILTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSYVAEGDAVDEPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL V +AV E + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 125 LALQ-VGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >emb|CCA80829.1| putative response regulator/transcriptional regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) [blood disease bacterium R229] Length = 204 Score = 223 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 130/191 (68%), Positives = 144/191 (75%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFASTLARSLARRGFRAVVAHTGEEALDAARRERFDYVTIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AHTG EAL AR+ F YVT+DL L Sbjct: 17 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQMPFAYVTVDLHLAASDRG 76 Query: 58 ------KDSGLQWVGPLRQALPEARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W+ PLRQALPEAR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 77 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 136 Query: 112 SALSYVAEGDAVDEPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL V +AV E + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 137 LALQ-VGVSEAVAEQTM--ENPAPLSMARLEWEHIQRVLAEHGGNISATARALNMHRRTL 193 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 194 QRKLGKRPVAK 204 >ref|YP_003753947.1| Fis family transcriptional regulator [Ralstonia solanacearum PSI07] emb|CBJ52687.2| putative response regulator/transcriptional regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) [Ralstonia solanacearum PSI07] Length = 204 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 130/191 (68%), Positives = 144/191 (75%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFASTLARSLARRGFRAVVAHTGEEALDAARRERFDYVTIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AHTG EAL AR+ F YVT+DL L Sbjct: 17 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQMPFAYVTVDLHLAASDRG 76 Query: 58 ------KDSGLQWVGPLRQALPEARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W+ PLRQALPEAR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 77 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 136 Query: 112 SALSYVAEGDAVDEPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL V +AV E + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 137 LALQ-VGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 193 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 194 QRKLGKRPVAK 204 >emb|CCA88329.1| putative response regulator/transcriptional regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) [Ralstonia syzygii R24] Length = 192 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 130/191 (68%), Positives = 144/191 (75%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFASTLARSLARRGFRAVVAHTGEEALDAARRERFDYVTIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AHTG EAL AR+ F YVT+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAASDRG 64 Query: 58 ------KDSGLQWVGPLRQALPEARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W+ PLRQALPEAR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSYVAEGDAVDEPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL V +AV E + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 125 LALQ-VGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192