BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2792.p (442 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776002.1| transmembrane sensor histidine kinase transc... 554 e-155 ref|YP_294399.1| sensor histidine kinase [Ralstonia eutropha JMP... 288 2e-75 ref|YP_331797.1| sensor kinase protein [Burkholderia pseudomalle... 287 2e-75 ref|YP_003753948.1| sensor histidine kinase [Ralstonia solanacea... 283 6e-74 ref|YP_002983325.1| histidine kinase [Ralstonia pickettii 12D] >... 282 7e-74 >ref|YP_003776002.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64094.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 443 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 347/423 (82%), Positives = 384/423 (90%), Gaps = 6/423 (1%) Query: 19 QHLLLSRLFWLRWAMVAGELLVLAGAHAWLHIALPLPALLALIGLQALINAATWLRMRWA 78 QH+LLSRLFWLRWAMVAGELLVLAGAH WLHIALP+P LLALIGLQAL+N ATWLR+RW Sbjct: 17 QHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRWT 76 Query: 79 RPAEQAELFMQLLLDVAVLTALLYFSGGSTNPFVSFYLPALAAGAATLAWPYALLLALCA 138 RPAEQ ELF+QLLLD+AVLTALLYFSGGSTNPFVSFYLPALAAGAA+LAWPYALLLALCA Sbjct: 77 RPAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALCA 136 Query: 139 LGCYSGLVYFYQPLHIHDHGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRLRDGQLA 198 LG YSGLVY Y+PLHIHD GQAMAYHLAGMWINFSISALLITWFVSRIAAAVR R+ +LA Sbjct: 137 LGAYSGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETELA 196 Query: 199 QARERQLQSHRIVALGTQAAGAAHALNTPLSTVAVIAGEMRRDMASNPALAAYEEDVRVV 258 +ARERQLQS RI+ALGTQAAGAAHALNTPLSTVAVIAGE+RRDMA+ PALAAY+E++RVV Sbjct: 197 RARERQLQSQRILALGTQAAGAAHALNTPLSTVAVIAGELRRDMATQPALAAYDEELRVV 256 Query: 259 EEQIAVCKAALENMRLDADAQLRNEDSAPITPWLTSLLEGWRLRHPAVLLAAEVHQPGWR 318 EEQIAVCKAALE+MR DADAQ RNEDSAPITPWLT+LLEGWRLRHPAVLL+AEVHQPGW Sbjct: 257 EEQIAVCKAALESMRQDADAQTRNEDSAPITPWLTTLLEGWRLRHPAVLLSAEVHQPGWV 316 Query: 319 ASQLQDLSQILLTLLDNAAHAVRGLGHQGEIRIRLAAAEAGERGSAASGKPGRNMAIIEV 378 A++L+DLSQILLTLLDNAAHAVR G +G + IR+ AA+ +G+P + AIIE+ Sbjct: 317 AARLEDLSQILLTLLDNAAHAVRERGSEGRVSIRMRAAD------EPAGRPAQKAAIIEI 370 Query: 379 SDNGAGISPELLQRLGHGPVASSSGGSGIGLMLATASATHLGGKLKLRSSPGQGTVAQLR 438 +DNG+GI+PELLQRLG PVASSSGGSGIGLMLA ASA HLGGKL+L S+PGQGT A+LR Sbjct: 371 ADNGSGIAPELLQRLGRAPVASSSGGSGIGLMLAFASAAHLGGKLRLYSTPGQGTCAELR 430 Query: 439 FPL 441 PL Sbjct: 431 LPL 433 >ref|YP_294399.1| sensor histidine kinase [Ralstonia eutropha JMP134] gb|AAZ59555.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 451 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 193/435 (44%), Positives = 258/435 (59%), Gaps = 30/435 (6%) Query: 17 QPQHLLLSRLFWLRWAMVAGELLVLAGAHAWLHIALPLPALLALIGLQALINAATWLRMR 76 +P + L RLFWLRWA++AG+ L L + + LP LL + LQAL N T LR+R Sbjct: 26 RPSLVSLRRLFWLRWALLAGQALCLLSCEPIIGVTLPTGPLLVVFALQALFNVLTGLRLR 85 Query: 77 W-----ARPAEQAELFMQLLLDVAVLTALLYFSGGSTNPFVSFYLPALAAGAATLAWPYA 131 + P E AEL QLL+D+ L+A+L+++GG+TNPFVSFYLP LA AA L W Sbjct: 86 LHTRHGSLPGE-AELMGQLLVDLTALSAILFYTGGATNPFVSFYLPGLAIAAAILPWRQV 144 Query: 132 LLLALCALGCYSGLVYFYQPLHIHDHGQAMAYHLAGMWINFSISALLITWFVSRIAAAVR 191 + LA AL CY+ L++ Y PL +HD +A+ YHLAGMW+NF SA++I FV+R++ +R Sbjct: 145 IALACFALACYTVLLFEYLPLDLHDPDKAVNYHLAGMWLNFVASAVMIALFVARLSGVLR 204 Query: 192 LRDGQLAQARERQLQSHRIVALGTQAAGAAHALNTPLSTVAVIAGEMRRDMA----SNPA 247 R+ QL ARE+ L+ R+ L QAA AH + TPL+T+AVIAGE+R D + S Sbjct: 205 QREAQLHLAREQLLREARVEDLNAQAAAVAHEIGTPLATLAVIAGELRADASDRARSGTP 264 Query: 248 LAAYEEDVRVVEEQIAVCKAALENMRLDADAQLRNEDSAPITPWLTSLLEGWRLRHP-AV 306 +A Y D+ VE+Q+ +C+ L +R D A L E I WL S E W+LRHP A Sbjct: 265 VADYLPDLLTVEQQLELCRTILARLREDP-ATLEPER---IDAWLGSFAERWQLRHPNAT 320 Query: 307 LLAAEVHQPGWRASQLQDLSQILLTLLDNAAHAVRGLGH-QGEIRIRLAAAEAGERGSAA 365 L A Q G A + + QIL LLDNAA + + GH Q +++ +A E+G+ A Sbjct: 321 LQANATAQAGALAIEPARVGQILTILLDNAARSQQSAGHAQRPLQLEIAF----EQGNIA 376 Query: 366 SGKPGRNMAIIEVSDNGAGISPELLQRLGHGPVASSSGGSGIGLMLATASATHLGGKLKL 425 VSD+G GI PEL +LG PV S GG GIGL LA + A +GG L Sbjct: 377 ----------FRVSDHGDGIPPELRSQLGETPVVSPHGGQGIGLYLAQSGARQMGGGLAW 426 Query: 426 RSSPGQGTVAQLRFP 440 R PG GT+A+LR P Sbjct: 427 RDRPGGGTIAELRVP 441 >ref|YP_331797.1| sensor kinase protein [Burkholderia pseudomallei 1710b] ref|ZP_02469321.1| sensor kinase protein [Burkholderia pseudomallei B7210] ref|ZP_04951081.1| sensor histidine kinase [Burkholderia pseudomallei 1710a] gb|ABA48994.1| sensor kinase protein [Burkholderia pseudomallei 1710b] gb|EET08100.1| sensor histidine kinase [Burkholderia pseudomallei 1710a] Length = 426 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 178/420 (42%), Positives = 244/420 (58%), Gaps = 19/420 (4%) Query: 23 LSRLFWLRWAMVAGELLVLAGAHAWLHIALPLPALLALIGLQALINAATWLRMRWARPAE 82 LS LFWLR + G+L+ +A + + LPLPA+L +I L+ + NA TW+R+ ARP Sbjct: 12 LSHLFWLRNLAIIGQLVTIAVVQTYFGVHLPLPAMLMVIALEIVFNALTWVRVLRARPET 71 Query: 83 QAELFMQLLLDVAVLTALLYFSGGSTNPFVSFYLPALAAGAATLAWPYALLLALCALGCY 142 EL QL +D+ L+ALL+ SGG+TNPFVS YLP+LA AA L W + LA A+ CY Sbjct: 72 NFELLGQLWVDLGALSALLFLSGGTTNPFVSLYLPSLAIAAAVLPWHLMIWLAAFAVACY 131 Query: 143 SGLVYFYQPLHIHDHGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRLRDGQLAQARE 202 L + PL++ + Y AGMW+NF +S LI WFV+R+++A+R RD L +A++ Sbjct: 132 LALGFDSVPLNLDNPANLFDYFRAGMWVNFMVSVGLIAWFVARMSSALRQRDAALGEAQQ 191 Query: 203 RQLQSHRIVALGTQAAGAAHALNTPLSTVAVIAGEMRRDMASNPALAAYEEDVRVVEEQI 262 L+ R VALG QAA AH + TPLST+A++ E+R ++ LA Y+ D++V+EEQ+ Sbjct: 192 ALLRDERAVALGVQAATVAHEMGTPLSTIAMLTEELREAARTDAGLARYDADLKVLEEQM 251 Query: 263 AVCKAALENMRLDADAQLRNEDSAPITPWLTSLLEGWRLRHPAVLLAAEVHQP-GWRASQ 321 + C +AL +R A + E P+ WL + +E WRLRHP VL QP G Sbjct: 252 SQCTSALARLRSRASERPSRE---PVGEWLDTFVEHWRLRHPHVLFEQRGPQPVGVALDD 308 Query: 322 LQDLSQILLTLLDNAAHAVRGLGHQGEIRIRLAAAEAGERGSAASGKPGRNMAIIEVSDN 381 + QIL LLDNAA A R R+ LAA A + R+ EV DN Sbjct: 309 TVAVGQILTILLDNAARASRD-------RVTLAATIAHD--------GARDEIEFEVCDN 353 Query: 382 GAGISPELLQRLGHGPVASSSGGSGIGLMLATASATHLGGKLKLRSSPGQGTVAQLRFPL 441 G GI L LG PV S+ GG G+GL LA +SA LGG ++L + +GT A LR P+ Sbjct: 354 GPGIPAALRDTLGAAPVDSTQGGHGVGLYLAFSSAARLGGSIELADAQPRGTRAILRLPV 413 >ref|YP_003753948.1| sensor histidine kinase [Ralstonia solanacearum PSI07] emb|CBJ52688.1| putative sensor histidine kinase [Ralstonia solanacearum PSI07] Length = 448 Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 181/424 (42%), Positives = 258/424 (60%), Gaps = 16/424 (3%) Query: 23 LSRLFWLRWAMVAGELLVLAGAHAWLHIALPLPALLALIGLQALINAATWLRMRWARPAE 82 L RLFWLRW ++A +L+++ A + LP+ LL+++GL A+ N T R+R RP Sbjct: 17 LRRLFWLRWILLATQLILMLLAPLIFGVQLPVVPLLSVMGLHAVFNLLTGWRVRRDRPVR 76 Query: 83 QAELFMQLLLDVAVLTALLYFSGGSTNPFVSFYLPALAAGAATLAWPYALLLALCALGCY 142 E+ +QLL+D+ L+ALLYF+GG+TNPFVSFYLPALA AA L + + L L AL Y Sbjct: 77 HIEITVQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPIAHVVGLTLYALAAY 136 Query: 143 SGLVYFYQPLHIHDHGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRLRDGQLAQARE 202 S ++ Y PL++ + A+ YHLAGMWI+F S+ +I F +R++AA+R R+ +LA ARE Sbjct: 137 SMMLGNYIPLNLLNQADAVPYHLAGMWIDFVASSAMIAGFTARLSAALREREAELADARE 196 Query: 203 RQLQSHRIVALGTQAAGAAHALNTPLSTVAVIAGEMRRDM-ASNPALAAYEEDVRVVEEQ 261 R L+ RI AL +Q A AH + TPLSTVAVI GE++ D S+ LA Y ED+R +E+Q Sbjct: 197 RLLREQRIEALVSQGASVAHEMGTPLSTVAVITGELQHDARQSDSPLAPYREDLRAIEQQ 256 Query: 262 IAVCKAALENMRLDADAQLRNEDSA--PITPWLTSLLEGWRLRHPAVLLAAEVHQPGWRA 319 + +C+AAL A Q + D A P+ WL + + W+LRHP + L E P +A Sbjct: 257 LELCRAAL------ARLQRKPSDGAPEPLGLWLPAFTQTWQLRHPDIRLHTE-SSPAAQA 309 Query: 320 SQLQ--DLSQILLTLLDNAAHAVRGLGHQGEIRIRLAAAEAGERGSAASGKPGRNMAIIE 377 +L ++ QIL LLDNAA + + G + A +A +A + + ++ Sbjct: 310 VELDAVNIGQILTILLDNAARSQQQAGRDQVPLLLTARIDA----NADTLREAPRQIVLS 365 Query: 378 VSDNGAGISPELLQRLGHGPVASSSGGSGIGLMLATASATHLGGKLKLRSSPGQGTVAQL 437 V D G G+ +L LG PV S GG GIGL LA +A LGG ++LR +P QG +A+L Sbjct: 366 VVDTGLGLPEDLRTALGRTPVPSRHGGHGIGLYLAATTARRLGGTVELRPNPPQGAIAEL 425 Query: 438 RFPL 441 R P+ Sbjct: 426 RLPV 429 >ref|YP_002983325.1| histidine kinase [Ralstonia pickettii 12D] gb|ACS64653.1| histidine kinase [Ralstonia pickettii 12D] Length = 448 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 186/427 (43%), Positives = 257/427 (60%), Gaps = 22/427 (5%) Query: 23 LSRLFWLRWAMVAGELLVLAGAHAWLHIALPLPALLALIGLQALINAATWLRMRWARPAE 82 L RLFWLRW+++A +L+++ A + LP+ LL+++GL AL N T R+R RP + Sbjct: 17 LRRLFWLRWSLLATQLVLMLLAPLVFGVQLPVVPLLSVMGLHALFNLLTGWRVRRNRPVQ 76 Query: 83 QAELFMQLLLDVAVLTALLYFSGGSTNPFVSFYLPALAAGAATLAWPYALLLALCALGCY 142 E+ +QLL+D+ L+ALLYF+GG+TNPFVSFYLPALA AA L + + L L AL Y Sbjct: 77 HIEITVQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPIAHVVGLTLYALAAY 136 Query: 143 SGLVYFYQPLHIHDHGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRLRDGQLAQARE 202 S ++ Y PL + + A+AYHLAGMWI+F S+ +I F +R++AA+R D QL +ARE Sbjct: 137 SMMLGNYIPLKLANQADALAYHLAGMWIDFVASSAMIAGFTARLSAALRESDAQLTEARE 196 Query: 203 RQLQSHRIVALGTQAAGAAHALNTPLSTVAVIAGEMRRDMAS-NPALAAYEEDVRVVEEQ 261 R L+ RI AL +Q A AH + TPLSTVAVI GE++ D + LA Y ED+R +E+Q Sbjct: 197 RLLREQRIEALMSQGASVAHEMGTPLSTVAVITGELQHDAKQPDSPLAPYREDLRAIEQQ 256 Query: 262 IAVCKAALENMRLDADAQLRNEDSA--PITPWLTSLLEGWRLRHPAVLLAAEVHQPGWRA 319 + +C+AAL A Q + D A P+ WL + W+LRHP + L E P +A Sbjct: 257 LELCRAAL------ARLQSKPNDGAPEPLGQWLPGFTQTWQLRHPDIRLHTEA-SPAAQA 309 Query: 320 SQLQ--DLSQILLTLLDNAAHAVRGLGHQGEIRIRLAAAEAGERGSAASGKPGRNMA--- 374 +L ++ QIL LLDNAA R H G + L R A P R+M Sbjct: 310 VELDAVNVGQILTILLDNAA---RSQHHAGRDLVPLLLT---ARIDANPDTP-RDMPPQI 362 Query: 375 IIEVSDNGAGISPELLQRLGHGPVASSSGGSGIGLMLATASATHLGGKLKLRSSPGQGTV 434 ++ + D G G+ +L LG PV S GG GIGL LA+ +A LGG + LR +P QG + Sbjct: 363 VLSIVDTGLGLPEDLRASLGRTPVPSRHGGRGIGLYLASTTARRLGGTVTLRPNPPQGAI 422 Query: 435 AQLRFPL 441 A+LR P+ Sbjct: 423 AELRLPI 429