BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2791.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776004.1| DNA polymerase III subunit delta [Herbaspiri... 624 e-177 ref|YP_001353675.1| DNA polymerase III subunit delta' [Janthinob... 451 e-125 ref|YP_004752475.1| DNA polymerase III subunit delta' [Collimona... 444 e-122 ref|YP_001099696.1| DNA polymerase III subunit delta' [Herminiim... 443 e-122 ref|ZP_08275258.1| DNA polymerase III, delta prime subunit [Oxal... 384 e-104 >ref|YP_003776004.1| DNA polymerase III subunit delta [Herbaspirillum seropedicae SmR1] gb|ADJ64096.1| DNA polymerase III delta subunit protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 336/345 (97%), Positives = 342/345 (99%) Query: 1 MSVTSSDRLLPWQGESWRQLQQLRERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPE 60 MS+TSSD LLPWQGESWRQLQQLRERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPE Sbjct: 1 MSLTSSDVLLPWQGESWRQLQQLRERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPE 60 Query: 61 AHACGVCASCNWFSQSNHPDYRRVRPEVLDDETAEDEAGEEKKTAKASKAPSKDIKIDQI 120 AHACGVCASCNWFSQSNHPDYRRVRPEVLDDETA+DEAGEEKKTAKASKAPSKDIKIDQI Sbjct: 61 AHACGVCASCNWFSQSNHPDYRRVRPEVLDDETADDEAGEEKKTAKASKAPSKDIKIDQI 120 Query: 121 RALADFMNVSTHRSGLRVVMLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLP 180 RALADFMNVSTHRSGLRVVMLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLP Sbjct: 121 RALADFMNVSTHRSGLRVVMLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLP 180 Query: 181 TILSRCRKFALTAPGHDEALAWLKQQGVKDADAWLAEQGGAPLAALEAAQGEGRDALDEL 240 TILSRCRKFAL+APGH EALAWLKQQGVKDADAWLAEQGGAPLAALEAAQGEGR+ALDEL Sbjct: 181 TILSRCRKFALSAPGHGEALAWLKQQGVKDADAWLAEQGGAPLAALEAAQGEGREALDEL 240 Query: 241 LRHLAQPGVDGALRAADKLQKTPAADLVGWVQRWLYDLLSLKSAGVVRYYPRYGKELGRL 300 LRHLAQPGVDGALRAADKLQKTPAADLVGWVQRWLYDLLSLKSAGVVRYYPRYGKELGRL Sbjct: 241 LRHLAQPGVDGALRAADKLQKTPAADLVGWVQRWLYDLLSLKSAGVVRYYPRYGKELGRL 300 Query: 301 AERVDALAVSKALRGMGDRRAIADHPLSAKLFIEEMLIDYARLFD 345 AERVDALA+S+ALRGMGDRRAIADHPLSAKLFIEEMLIDYA LFD Sbjct: 301 AERVDALALSRALRGMGDRRAIADHPLSAKLFIEEMLIDYAGLFD 345 >ref|YP_001353675.1| DNA polymerase III subunit delta' [Janthinobacterium sp. Marseille] gb|ABR88858.1| DNA polymerase III delta' subunit [Janthinobacterium sp. Marseille] Length = 344 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 222/324 (68%), Positives = 269/324 (83%), Gaps = 3/324 (0%) Query: 24 RERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPEAHACGVCASCNWFSQSNHPDYRR 83 RERLPHA+LF+GA G GKT F EAFA+SLLCE+P + HACG C +C WF+Q +HPDYRR Sbjct: 20 RERLPHAILFHGAEGIGKTAFAEAFAQSLLCETPAADGHACGSCIACGWFTQYSHPDYRR 79 Query: 84 VRPEVLDD-ETAEDEAGE--EKKTAKASKAPSKDIKIDQIRALADFMNVSTHRSGLRVVM 140 VRPE+LDD ++AE E E + K AK +KAPSK+IKIDQIRAL DFMN+STHRSG+RVV+ Sbjct: 80 VRPEILDDGDSAEGEDAEAADTKKAKTTKAPSKEIKIDQIRALGDFMNISTHRSGMRVVV 139 Query: 141 LYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLPTILSRCRKFALTAPGHDEAL 200 LYPAE LNTAAAN+LLK LEEPPP TMFLL+SN LDRLLPTILSRCRKFAL PG DEAL Sbjct: 140 LYPAEVLNTAAANSLLKMLEEPPPQTMFLLVSNSLDRLLPTILSRCRKFALALPGRDEAL 199 Query: 201 AWLKQQGVKDADAWLAEQGGAPLAALEAAQGEGRDALDELLRHLAQPGVDGALRAADKLQ 260 WLK Q V +AD WLAEQGGAPLAA +A+Q R+ +D+ LR LAQPGVDGAL+AAD+LQ Sbjct: 200 QWLKSQQVSEADGWLAEQGGAPLAAFDASQAGMRETMDDFLRQLAQPGVDGALKAADRLQ 259 Query: 261 KTPAADLVGWVQRWLYDLLSLKSAGVVRYYPRYGKELGRLAERVDALAVSKALRGMGDRR 320 KTP +LV W+QRWLYD+LS+K +G +RYYPRY KELG LA+RV+ A+ + ++ + DRR Sbjct: 260 KTPVPELVAWLQRWLYDVLSVKLSGTIRYYPRYKKELGALAQRVETAALLQEIKAVNDRR 319 Query: 321 AIADHPLSAKLFIEEMLIDYARLF 344 AIA+HPL+ KLFIE+ML++Y+ +F Sbjct: 320 AIAEHPLAPKLFIEDMLLEYSTIF 343 >ref|YP_004752475.1| DNA polymerase III subunit delta' [Collimonas fungivorans Ter331] gb|AEK61652.1| DNA polymerase III, delta prime subunit [Collimonas fungivorans Ter331] Length = 348 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 229/346 (66%), Positives = 271/346 (78%), Gaps = 7/346 (2%) Query: 6 SDRLLPWQGESWRQLQQLRERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPEAHACG 65 S+ L PWQ W+QLQQ+R RLPHA+LF+GA G GKT F E FA+SLLCE P + HACG Sbjct: 2 SNSLFPWQDGVWQQLQQMRARLPHAILFHGAEGIGKTVFAEQFAQSLLCEQPQADGHACG 61 Query: 66 VCASCNWFSQSNHPDYRRVRPEVLDDETAEDEAGEE-------KKTAKASKAPSKDIKID 118 VC SC WF Q NHPDYRRVRPE+LD E A + G E K AK++KAPSK+IKID Sbjct: 62 VCGSCGWFMQYNHPDYRRVRPEILDGEDAAEGDGAEDGDKGSTKSAAKSAKAPSKEIKID 121 Query: 119 QIRALADFMNVSTHRSGLRVVMLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRL 178 QIR L+ FMN+STHR G RVV+LYPAEALNTAAANALLKTLEEPPP T+FLL SN LDRL Sbjct: 122 QIRVLSGFMNISTHRQGQRVVLLYPAEALNTAAANALLKTLEEPPPNTVFLLSSNSLDRL 181 Query: 179 LPTILSRCRKFALTAPGHDEALAWLKQQGVKDADAWLAEQGGAPLAALEAAQGEGRDALD 238 LPTILSRCRKFA+ P H +A+AWL+QQ VKDAD WLAEQGGAPL A +Q EGR+ +D Sbjct: 182 LPTILSRCRKFAMPLPSHQQAMAWLRQQEVKDADVWLAEQGGAPLTAYAQSQSEGRELID 241 Query: 239 ELLRHLAQPGVDGALRAADKLQKTPAADLVGWVQRWLYDLLSLKSAGVVRYYPRYGKELG 298 E L+HL +PG+DGAL+ A+ LQKTP A+LVGW QRWLYDL S K +G +RYYPRY K L Sbjct: 242 EFLQHLTKPGIDGALKCAEHLQKTPVAELVGWQQRWLYDLFSFKLSGTIRYYPRYEKALA 301 Query: 299 RLAERVDALAVSKALRGMGDRRAIADHPLSAKLFIEEMLIDYARLF 344 LA +V+ A+ +AL+ +RRA+A+HPLSA+LFIEEML+DYA +F Sbjct: 302 GLAAKVETGALLRALKSSNERRAVAEHPLSARLFIEEMLLDYAAMF 347 >ref|YP_001099696.1| DNA polymerase III subunit delta' [Herminiimonas arsenicoxydans] emb|CAL61569.1| DNA polymerase III, delta prime subunit [Herminiimonas arsenicoxydans] Length = 343 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 223/341 (65%), Positives = 274/341 (80%), Gaps = 3/341 (0%) Query: 7 DRLLPWQGESWRQLQQLRERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPEAHACGV 66 + L PWQ SW+Q Q+LRERLPHA+LF+G G GKT F EA A+SLLCE+P + HACG Sbjct: 2 NTLYPWQHASWQQWQKLRERLPHAILFHGPEGIGKTAFAEACAQSLLCETPNTDGHACGT 61 Query: 67 CASCNWFSQSNHPDYRRVRPEVLDDETAEDEAGE---EKKTAKASKAPSKDIKIDQIRAL 123 CA+C WF Q +HPDYRRVRPE+LDD + + + K +K++KAPSK+IKIDQIRAL Sbjct: 62 CAACGWFGQYSHPDYRRVRPEILDDGESAEGEEAEAGDTKKSKSTKAPSKEIKIDQIRAL 121 Query: 124 ADFMNVSTHRSGLRVVMLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLPTIL 183 +DFMN+STHRSG+RVV LYPAEALNTAAAN+LLK LEEPPP TMFLL +N +DRLLPTIL Sbjct: 122 SDFMNISTHRSGMRVVTLYPAEALNTAAANSLLKMLEEPPPNTMFLLATNSIDRLLPTIL 181 Query: 184 SRCRKFALTAPGHDEALAWLKQQGVKDADAWLAEQGGAPLAALEAAQGEGRDALDELLRH 243 SRCRKFAL PG +E L WL+ Q VKDAD+WLAEQGGAPLAAL ++Q R+ LDE L+ Sbjct: 182 SRCRKFALAMPGAEETLQWLQAQQVKDADSWLAEQGGAPLAALASSQAGARETLDEFLQQ 241 Query: 244 LAQPGVDGALRAADKLQKTPAADLVGWVQRWLYDLLSLKSAGVVRYYPRYGKELGRLAER 303 LAQPGVD AL+ A++LQKTP +LV W+QRWLYD+LS+K +G +RYYPR+ KEL LA R Sbjct: 242 LAQPGVDAALKTAERLQKTPVTELVAWLQRWLYDVLSVKLSGTIRYYPRHQKELAALAAR 301 Query: 304 VDALAVSKALRGMGDRRAIADHPLSAKLFIEEMLIDYARLF 344 DA A+ +A++ + +RRAIADHPL+ KLFIE+ML+DY+ LF Sbjct: 302 ADAGALLQAIKMLNERRAIADHPLAPKLFIEDMLLDYSTLF 342 >ref|ZP_08275258.1| DNA polymerase III, delta prime subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF31264.1| DNA polymerase III, delta prime subunit [Oxalobacteraceae bacterium IMCC9480] Length = 346 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 214/341 (62%), Positives = 255/341 (74%), Gaps = 5/341 (1%) Query: 9 LLPWQGESWRQLQQLRERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPEAHACGVCA 68 + PWQ ++W+QL +R RLPHA+L +G G GKT F EAFA SLLCE P + ACG+C Sbjct: 5 IYPWQQQAWQQLHAMRARLPHAILLHGNPGIGKTDFAEAFAASLLCEQPLDDGRACGICL 64 Query: 69 SCNWFSQSNHPDYRRVRPEVLDDETAEDEAGEEKK-----TAKASKAPSKDIKIDQIRAL 123 SC WF Q HPDYRRVRPEVLD A + A + TAKASK PSK+I+IDQIRAL Sbjct: 65 SCGWFGQYAHPDYRRVRPEVLDGADAANSADDSDAGDDKKTAKASKVPSKEIRIDQIRAL 124 Query: 124 ADFMNVSTHRSGLRVVMLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLPTIL 183 ADFMN+STHR+G RVV+LYPAEALNT +ANALLK+LEEPPP T+FL++SN LDRLLPTIL Sbjct: 125 ADFMNISTHRNGKRVVLLYPAEALNTISANALLKSLEEPPPDTVFLMVSNSLDRLLPTIL 184 Query: 184 SRCRKFALTAPGHDEALAWLKQQGVKDADAWLAEQGGAPLAALEAAQGEGRDALDELLRH 243 SRCRK AL P ALAWL+QQ V+DAD WLAEQGGAPLAAL AQ +A DELL Sbjct: 185 SRCRKLALPLPTTQVALAWLEQQQVRDADMWLAEQGGAPLAALALAQAGSHEAQDELLAM 244 Query: 244 LAQPGVDGALRAADKLQKTPAADLVGWVQRWLYDLLSLKSAGVVRYYPRYGKELGRLAER 303 LA+P V+ +L+ ADKLQK DLV +QRWL+DLLS+K +G +RYYPR EL LA R Sbjct: 245 LARPSVEASLKTADKLQKAVVLDLVVCLQRWLHDLLSVKLSGKLRYYPRKQSELTALAAR 304 Query: 304 VDALAVSKALRGMGDRRAIADHPLSAKLFIEEMLIDYARLF 344 V A+ KA+ +RRAIA HPL+A+LFIE+ML+DY+ LF Sbjct: 305 VALPALMKAVDQARERRAIAQHPLAARLFIEDMLLDYSHLF 345