BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2790.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776005.1| thymidylate kinase [Herbaspirillum seropedic... 369 e-100 ref|YP_001353676.1| thymidylate kinase [Janthinobacterium sp. Ma... 312 2e-83 ref|YP_004752474.1| thymidylate kinase [Collimonas fungivorans T... 310 6e-83 ref|YP_001099695.1| thymidylate kinase [Herminiimonas arsenicoxy... 306 9e-82 ref|ZP_08275259.1| Thymidylate kinase [Oxalobacteraceae bacteriu... 298 4e-79 >ref|YP_003776005.1| thymidylate kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64097.1| thymidylate kinase protein [Herbaspirillum seropedicae SmR1] Length = 202 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 196/202 (97%), Positives = 200/202 (99%) Query: 1 MASGKFITFEGIDGAGKSTHIPFVTQLLRERGMTVVATREPGGTDLGERLRELVLHHKMH 60 MASGKFITFEGIDGAGKSTHIPFVTQLLR+RG+TVVATREPGGT+LGERLRELVLHHKMH Sbjct: 1 MASGKFITFEGIDGAGKSTHIPFVTQLLRDRGLTVVATREPGGTELGERLRELVLHHKMH 60 Query: 61 LETEALLMFASRREHLAQVIEPALARGDWVISDRFTDATFAYQGGGRKLALDKLDRLEQW 120 LETEALLMFASRREHLAQVIEPALARGDWVISDRFTDATFAYQGGGRKLALDKLDRLEQW Sbjct: 61 LETEALLMFASRREHLAQVIEPALARGDWVISDRFTDATFAYQGGGRKLALDKLDRLEQW 120 Query: 121 VHPHLQPDLTLLFDVPLEVARARLDAERTLDKFEQEKADFFANTRAEYLRRAAQFPQRFR 180 VHPHLQPDLTLLFDVPLEVARARLDAERTLDKFEQEKADFFANTRAEYLRRAAQFP RFR Sbjct: 121 VHPHLQPDLTLLFDVPLEVARARLDAERTLDKFEQEKADFFANTRAEYLRRAAQFPHRFR 180 Query: 181 LIDSTRPIPVIQEELRAIVAAL 202 LIDSTRPI VIQE+LRAIVAAL Sbjct: 181 LIDSTRPIAVIQEDLRAIVAAL 202 >ref|YP_001353676.1| thymidylate kinase [Janthinobacterium sp. Marseille] sp|A6SZH9|KTHY_JANMA RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase gb|ABR88747.1| thymidylate kinase (dTMP kinase) [Janthinobacterium sp. Marseille] Length = 204 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 164/202 (81%), Positives = 178/202 (88%) Query: 1 MASGKFITFEGIDGAGKSTHIPFVTQLLRERGMTVVATREPGGTDLGERLRELVLHHKMH 60 M +GKFITFEGIDGAGKSTH+ FV +LL ER TVV TREPGGT LGE LRE++LH KMH Sbjct: 1 MTTGKFITFEGIDGAGKSTHLSFVAELLCERKKTVVVTREPGGTSLGEELREILLHEKMH 60 Query: 61 LETEALLMFASRREHLAQVIEPALARGDWVISDRFTDATFAYQGGGRKLALDKLDRLEQW 120 LETEALLMFA+RREH+AQVI PAL RGDWVISDRFTDATFAYQGGGRKL KL+ LEQW Sbjct: 61 LETEALLMFAARREHIAQVIAPALERGDWVISDRFTDATFAYQGGGRKLDRAKLNALEQW 120 Query: 121 VHPHLQPDLTLLFDVPLEVARARLDAERTLDKFEQEKADFFANTRAEYLRRAAQFPQRFR 180 VHPHLQP LTLLFDVPL+VARARLDA RTLDKFEQEKA+FFA TRAEYLRRAA+FPQRF Sbjct: 121 VHPHLQPHLTLLFDVPLDVARARLDATRTLDKFEQEKAEFFAATRAEYLRRAAEFPQRFH 180 Query: 181 LIDSTRPIPVIQEELRAIVAAL 202 +IDSTR I IQE+LRAIVA + Sbjct: 181 VIDSTRSIAAIQEQLRAIVAGI 202 >ref|YP_004752474.1| thymidylate kinase [Collimonas fungivorans Ter331] gb|AEK61651.1| Thymidylate kinase [Collimonas fungivorans Ter331] Length = 208 Score = 310 bits (795), Expect = 6e-83, Method: Composition-based stats. Identities = 161/199 (80%), Positives = 179/199 (89%) Query: 4 GKFITFEGIDGAGKSTHIPFVTQLLRERGMTVVATREPGGTDLGERLRELVLHHKMHLET 63 KFITFEGIDGAGKSTHI FV LLR +G+ V+ TREPGGT LGE LRE++LH KMHLET Sbjct: 2 AKFITFEGIDGAGKSTHIAFVADLLRAQGLQVITTREPGGTTLGEALREVLLHQKMHLET 61 Query: 64 EALLMFASRREHLAQVIEPALARGDWVISDRFTDATFAYQGGGRKLALDKLDRLEQWVHP 123 EA+LMFA+RREHLAQVIEPALARGDWVISDRFTDATFAYQGGGR+L L KL+ LEQWVHP Sbjct: 62 EAMLMFAARREHLAQVIEPALARGDWVISDRFTDATFAYQGGGRQLPLAKLEALEQWVHP 121 Query: 124 HLQPDLTLLFDVPLEVARARLDAERTLDKFEQEKADFFANTRAEYLRRAAQFPQRFRLID 183 HLQPDLTLLFDVPLEVAR RLDA RTLDKFEQEKADFFA TRAEYLRRAAQFP+RFR+ID Sbjct: 122 HLQPDLTLLFDVPLEVARTRLDATRTLDKFEQEKADFFAATRAEYLRRAAQFPERFRVID 181 Query: 184 STRPIPVIQEELRAIVAAL 202 +TR I +Q+EL+ I+++L Sbjct: 182 ATRTIAEVQQELKQIISSL 200 >ref|YP_001099695.1| thymidylate kinase [Herminiimonas arsenicoxydans] sp|A4G4Y1|KTHY_HERAR RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase emb|CAL61568.1| thymidylate kinase (dTMP kinase) [Herminiimonas arsenicoxydans] Length = 204 Score = 306 bits (785), Expect = 9e-82, Method: Composition-based stats. Identities = 161/202 (79%), Positives = 174/202 (86%) Query: 1 MASGKFITFEGIDGAGKSTHIPFVTQLLRERGMTVVATREPGGTDLGERLRELVLHHKMH 60 M KFITFEGIDGAGKSTH+ FV LLR VV TREPGGT LGE LR ++LH KMH Sbjct: 1 MTKAKFITFEGIDGAGKSTHLSFVADLLRASKKNVVVTREPGGTSLGEALRTILLHEKMH 60 Query: 61 LETEALLMFASRREHLAQVIEPALARGDWVISDRFTDATFAYQGGGRKLALDKLDRLEQW 120 LETEALLMFA+RREH+AQ+IEPALARGDWVISDRFTDATFAYQGGGRKL KL LEQW Sbjct: 61 LETEALLMFAARREHIAQLIEPALARGDWVISDRFTDATFAYQGGGRKLDRQKLSVLEQW 120 Query: 121 VHPHLQPDLTLLFDVPLEVARARLDAERTLDKFEQEKADFFANTRAEYLRRAAQFPQRFR 180 VHPHLQPDLTLLFDVPL+VARARLDA RTLDKFEQE+ADFFA TRAEYLRRAA+FPQRFR Sbjct: 121 VHPHLQPDLTLLFDVPLDVARARLDATRTLDKFEQEQADFFAATRAEYLRRAAEFPQRFR 180 Query: 181 LIDSTRPIPVIQEELRAIVAAL 202 +IDST+ I IQE+LR I+A L Sbjct: 181 IIDSTQAIATIQEQLRDIIAGL 202 >ref|ZP_08275259.1| Thymidylate kinase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31265.1| Thymidylate kinase [Oxalobacteraceae bacterium IMCC9480] Length = 205 Score = 298 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 152/198 (76%), Positives = 174/198 (87%) Query: 5 KFITFEGIDGAGKSTHIPFVTQLLRERGMTVVATREPGGTDLGERLRELVLHHKMHLETE 64 KFITFEGIDGAGKS+H+ FV LL RG+ V +TREPGGT LGE+LR ++LH KMHLETE Sbjct: 8 KFITFEGIDGAGKSSHLSFVADLLVARGIRVTSTREPGGTPLGEQLRSVLLHQKMHLETE 67 Query: 65 ALLMFASRREHLAQVIEPALARGDWVISDRFTDATFAYQGGGRKLALDKLDRLEQWVHPH 124 ALLMFASRREHLAQVIEPALARGDWVISDRFTDATFAYQGGGR L + KL++LEQWVHPH Sbjct: 68 ALLMFASRREHLAQVIEPALARGDWVISDRFTDATFAYQGGGRHLPVAKLEQLEQWVHPH 127 Query: 125 LQPDLTLLFDVPLEVARARLDAERTLDKFEQEKADFFANTRAEYLRRAAQFPQRFRLIDS 184 LQPDLTLLFDVPL+VARARLDA R+LDKFEQE++DFFA R EYLRRAAQFP RFR++DS Sbjct: 128 LQPDLTLLFDVPLDVARARLDATRSLDKFEQEQSDFFAGVRGEYLRRAAQFPARFRIVDS 187 Query: 185 TRPIPVIQEELRAIVAAL 202 T+ + ++ L AI+A+L Sbjct: 188 TQSMAQVRAALTAIMASL 205