BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2788.p (354 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776007.1| glycine cleavage system protein T [Herbaspir... 590 e-166 ref|YP_001353678.1| glycine cleavage T protein [Janthinobacteriu... 395 e-108 ref|YP_004752472.1| putative aminomethyltransferase [Collimonas ... 377 e-102 ref|YP_001099693.1| hypothetical protein HEAR1394 [Herminiimonas... 372 e-101 ref|ZP_08275261.1| Folate-dependent protein for Fe/S cluster syn... 347 2e-93 >ref|YP_003776007.1| glycine cleavage system protein T [Herbaspirillum seropedicae SmR1] gb|ADJ64099.1| glycine cleavage T (aminomethyltransferase) protein [Herbaspirillum seropedicae SmR1] Length = 360 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 322/360 (89%), Positives = 332/360 (92%), Gaps = 6/360 (1%) Query: 1 MTDMTSSPSGWRDFLAQQGAQFDAESG------DITGFGPTAPTPQSLESFMAPLTSLGL 54 MT+MTSSPS WRDFLAQQGAQF+A+S D+ GF PTA PQSLESFMAPLTSLGL Sbjct: 1 MTEMTSSPSAWRDFLAQQGAQFEADSAEPVDHADVIGFAPTAAAPQSLESFMAPLTSLGL 60 Query: 55 ITATGEDAASFLHGQLTNDVQQLDSSAARLAGYCSPKGRLLATFLMWRDEQAIWLQLPRS 114 I TGEDAASFLHGQLTNDVQ LD+ +ARLAGYCSPKGRLLATFLMWRD+QA WLQLPRS Sbjct: 61 IAVTGEDAASFLHGQLTNDVQHLDTGSARLAGYCSPKGRLLATFLMWRDDQASWLQLPRS 120 Query: 115 LQPAIQKRLQMFVMRAKAKLADASAERAVLGLVGPATANALAEWFPVLPAAPYAKIDNSH 174 LQPAIQKRLQMFVMRAKAKLADAS ER VLGL GPATANALAEWFPVLPAAPY KIDNSH Sbjct: 121 LQPAIQKRLQMFVMRAKAKLADASTERGVLGLAGPATANALAEWFPVLPAAPYDKIDNSH 180 Query: 175 GTLIRLADAAGSPRYQWIAPVDILTAAWPKLSQHLTPTASLAWRLSEIRAGVPGIVQATQ 234 GTLIRLADAAGSPRYQWIA +D LTAAWP+L+QHLTPTASLAWRLSEIRAGVPGIV ATQ Sbjct: 181 GTLIRLADAAGSPRYQWIAAIDTLTAAWPRLAQHLTPTASLAWRLSEIRAGVPGIVAATQ 240 Query: 235 EQFVPQMINFELIGGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATIASAEARAGQEVFA 294 EQFVPQMINFELIGGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATI SA ARAGQEVFA Sbjct: 241 EQFVPQMINFELIGGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATIDSAAARAGQEVFA 300 Query: 295 AADPGQPCGMVVNAEALDAEHALALVEMKLAAAEDAVHLGAADGPALHFHALPYELADPQ 354 AADPGQPCGMVVNAEALD HALALVEMKLAAAEDAVHLGAADGPALHFHALPYELADPQ Sbjct: 301 AADPGQPCGMVVNAEALDDGHALALVEMKLAAAEDAVHLGAADGPALHFHALPYELADPQ 360 >ref|YP_001353678.1| glycine cleavage T protein [Janthinobacterium sp. Marseille] gb|ABR89841.1| glycine cleavage T protein [Janthinobacterium sp. Marseille] Length = 349 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 209/344 (60%), Positives = 247/344 (71%), Gaps = 1/344 (0%) Query: 11 WRDFLAQQGAQF-DAESGDITGFGPTAPTPQSLESFMAPLTSLGLITATGEDAASFLHGQ 69 W FLA QGA D + I FG P + +F+APLT LGLI A+G+DAA+FLH Q Sbjct: 4 WLTFLADQGANISDDAAPRIVSFGAEIPGETAKTNFIAPLTHLGLIAASGDDAANFLHNQ 63 Query: 70 LTNDVQQLDSSAARLAGYCSPKGRLLATFLMWRDEQAIWLQLPRSLQPAIQKRLQMFVMR 129 LTNDV+ L SS ARLAGYCSPKGRLLA+FL W+ I LQLPR LQ IQKRLQMF++R Sbjct: 64 LTNDVEHLGSSEARLAGYCSPKGRLLASFLYWQTADRIMLQLPRELQATIQKRLQMFILR 123 Query: 130 AKAKLADASAERAVLGLVGPATANALAEWFPVLPAAPYAKIDNSHGTLIRLADAAGSPRY 189 AKAKLAD S E +LG+ GPA A+AL WFP LP A Y K+DN GT+IR ++A PRY Sbjct: 124 AKAKLADVSEEYVMLGIAGPAAASALMPWFPTLPVAIYGKVDNEAGTVIRHSNAFEVPRY 183 Query: 190 QWIAPVDILTAAWPKLSQHLTPTASLAWRLSEIRAGVPGIVQATQEQFVPQMINFELIGG 249 QWI V+ AWP L++ L + + AW L+EI GVP I ATQEQFVPQMINFEL+GG Sbjct: 184 QWITTVEQAIEAWPHLTEILQASGADAWHLAEIDGGVPHITAATQEQFVPQMINFELLGG 243 Query: 250 VNFKKGCYPGQEIVARSQYLGKLKRRTMLATIASAEARAGQEVFAAADPGQPCGMVVNAE 309 VNFKKGCYPGQEIVARSQYLGKLKRR + A++ + + G E+F+A DP QPCGMVVNAE Sbjct: 244 VNFKKGCYPGQEIVARSQYLGKLKRRMLHASVTATQVAPGTEIFSANDPDQPCGMVVNAE 303 Query: 310 ALDAEHALALVEMKLAAAEDAVHLGAADGPALHFHALPYELADP 353 A+ + LVE+KLAA + VHLG+A GP L F LPY L DP Sbjct: 304 RSGADISDCLVEIKLAATDAPVHLGSASGPLLSFQPLPYPLTDP 347 >ref|YP_004752472.1| putative aminomethyltransferase [Collimonas fungivorans Ter331] gb|AEK61649.1| putative aminomethyltransferase [Collimonas fungivorans Ter331] Length = 350 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 225/357 (63%), Positives = 257/357 (71%), Gaps = 20/357 (5%) Query: 1 MTDMTSSPSGWRDFLAQQGAQFDAESGDITGFGPTAPTPQSLESFMAPLTSLGLITATGE 60 M +MTS+ W DF QQ FDA T + SF+APLT LGLI +GE Sbjct: 1 MNEMTST---WLDFSQQQ--SFDA----------LPATATAGASFVAPLTDLGLIAFSGE 45 Query: 61 DAASFLHGQLTNDVQQLDSSAARLAGYCSPKGRLLATFLMWRDEQAIWLQLPRSLQPAIQ 120 DAASFLH QLTNDVQ L + ARLAGYCSPKGRLLATFLMW+ +I LQLPRSLQ AIQ Sbjct: 46 DAASFLHTQLTNDVQNLPAGQARLAGYCSPKGRLLATFLMWKSGDSILLQLPRSLQAAIQ 105 Query: 121 KRLQMFVMRAKAKLADASAERAVLGLVGPATANALAEWFPVLPAAPYAKIDNSHGTLIRL 180 KRLQMFVMRAKAK AD S + +LGL G A ALA WFP LPA PYAK+DN HGTLIR+ Sbjct: 106 KRLQMFVMRAKAKPADVSDTQIILGLAGNAAGAALAPWFPALPAEPYAKLDNEHGTLIRV 165 Query: 181 ADA----AGSPRYQWIAPVDILTAAWPKLSQHLTPTASLAWRLSEIRAGVPGIVQATQEQ 236 ADA PRYQWI + AAWP+L ++L P A+ AWRL +I AGVP I TQEQ Sbjct: 166 ADADTGTGSVPRYQWITSPEHAIAAWPQLGKNLQPVAASAWRLGDILAGVPQITLPTQEQ 225 Query: 237 FVPQMINFELIGGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATIASAEARAGQEVFAAA 296 FVPQMINFE+IGGVNFKKGCYPGQEIVARSQYLGKLKRR +LA++A+ AG EVF++A Sbjct: 226 FVPQMINFEVIGGVNFKKGCYPGQEIVARSQYLGKLKRRAVLASVAATGIAAGTEVFSSA 285 Query: 297 DPGQPCGMVVNAEALDAEHALALVEMKLAAAEDA-VHLGAADGPALHFHALPYELAD 352 DP QPCGM+VNAEA A + L+E+KLAA E+ VHLG+ GP L F ALPY + D Sbjct: 286 DPDQPCGMIVNAEADSAGSSRCLLEIKLAALENGTVHLGSTAGPQLQFQALPYSIVD 342 >ref|YP_001099693.1| hypothetical protein HEAR1394 [Herminiimonas arsenicoxydans] emb|CAL61566.1| putative Glycine cleavage T protein (aminomethyl transferase) [Herminiimonas arsenicoxydans] Length = 352 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 202/348 (58%), Positives = 249/348 (71%), Gaps = 5/348 (1%) Query: 11 WRDFLAQQGAQFDAESG-----DITGFGPTAPTPQSLESFMAPLTSLGLITATGEDAASF 65 W +FLA+QGAQF ++ FG + F+AP+ LGLI A+G++AA F Sbjct: 4 WLNFLAEQGAQFGTSGSAEAVPELLHFGAQMTSETPRTDFVAPIIYLGLIAASGDEAAHF 63 Query: 66 LHGQLTNDVQQLDSSAARLAGYCSPKGRLLATFLMWRDEQAIWLQLPRSLQPAIQKRLQM 125 LH QLTNDV+ LD+ AARLAGYCSPKGRLLA+ L+W+ I LQLPR LQ ++QKRLQM Sbjct: 64 LHSQLTNDVEHLDAGAARLAGYCSPKGRLLASLLIWKTADGIMLQLPRELQASVQKRLQM 123 Query: 126 FVMRAKAKLADASAERAVLGLVGPATANALAEWFPVLPAAPYAKIDNSHGTLIRLADAAG 185 FV+RAKA+L DA+ +LGL GPA + L +WFPVLPAA Y K +++ GTLIR DA G Sbjct: 124 FVLRAKARLIDATENHVMLGLAGPAASKVLQQWFPVLPAAIYDKAESAAGTLIRHPDAFG 183 Query: 186 SPRYQWIAPVDILTAAWPKLSQHLTPTASLAWRLSEIRAGVPGIVQATQEQFVPQMINFE 245 + RYQWI AWP+L++ L + AW+L+EI +GVP I ATQE+FVPQMINFE Sbjct: 184 TARYQWITTAAQAVEAWPQLTKVLQAAGAAAWQLAEIDSGVPHISIATQEKFVPQMINFE 243 Query: 246 LIGGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATIASAEARAGQEVFAAADPGQPCGMV 305 LIGGVNF+KGCYPGQEIVARSQYLGKLKRR + A +++A A G E+F+ +DP QPCGMV Sbjct: 244 LIGGVNFRKGCYPGQEIVARSQYLGKLKRRMLHAKVSAASAEPGTEIFSVSDPEQPCGMV 303 Query: 306 VNAEALDAEHALALVEMKLAAAEDAVHLGAADGPALHFHALPYELADP 353 VNAE +A+ LVE+KLAAAE V LG+A GP L F LPY L DP Sbjct: 304 VNAERTNAQEIACLVEIKLAAAESEVRLGSAQGPVLLFQPLPYPLTDP 351 >ref|ZP_08275261.1| Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress [Oxalobacteraceae bacterium IMCC9480] gb|EGF31267.1| Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress [Oxalobacteraceae bacterium IMCC9480] Length = 334 Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 197/346 (56%), Positives = 241/346 (69%), Gaps = 17/346 (4%) Query: 9 SGWRDFLAQQGAQFDAESGDITGFGPTAPTPQSL-ESFMAPLTSLGLITATGEDAASFLH 67 + W F+AQ+ P + TP + +SF + LT LGLI G+DAA+FLH Sbjct: 2 TNWHHFIAQEN--------------PLSDTPATTSDSFFSALTDLGLIAFEGDDAANFLH 47 Query: 68 GQLTNDVQQLDSSAARLAGYCSPKGRLLATFLMWRDEQAIWLQLPRSLQPAIQKRLQMFV 127 QLTNDV+ L ARLAGYC+PKGRLLA+FLMWR +I L++ R +QPAIQKRLQMFV Sbjct: 48 NQLTNDVEHLGIDQARLAGYCTPKGRLLASFLMWRTVDSIVLEVARDIQPAIQKRLQMFV 107 Query: 128 MRAKAKLADASAERAVLGLVGPATANALAEWFPVLPAAPYAKIDNSHGTLIRLADAAGSP 187 MRAKAK +D + A++GL G A ALA WFP+LP APYAK++N+ GT+IRLADA Sbjct: 108 MRAKAKSSDLTDSSAIIGLGGDAAGAALASWFPLLPDAPYAKVENAAGTVIRLADAGTMV 167 Query: 188 RYQWIAPVDILTAAWPKLSQHLTPTASLAWRLSEIRAGVPGIVQATQEQFVPQMINFELI 247 RYQWI +I AAWP+L L + WRL+EI A +P I ATQE+FVPQM+N E I Sbjct: 168 RYQWITTPEIAIAAWPQLGTTLRQAGTEHWRLTEILAAIPHITLATQEKFVPQMVNLEAI 227 Query: 248 GGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATIASAEARAGQEVFAAADPGQPCGMVVN 307 GGVNF+KGCYPGQEIVARSQYLGKLKRRT+ A++++ E AG EVFAA +P QPCGM+VN Sbjct: 228 GGVNFRKGCYPGQEIVARSQYLGKLKRRTLPASVSAPEVAAGMEVFAANEPEQPCGMIVN 287 Query: 308 AEALDAEHALALVEMKLAAAE-DAVHLGAADGPALHFHALPYELAD 352 A + LVE+K AA + +HLG A GPALHF ALPY L D Sbjct: 288 AARDASGLHHCLVEIKTAALDAGTIHLG-AQGPALHFTALPYALPD 332