BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2787.p         (99 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776008.1| hypothetical protein Hsero_2604 [Herbaspiril...   150   5e-35
ref|ZP_08275262.1| hypothetical protein IMCC9480_114 [Oxalobacte...    92   3e-17
ref|YP_001099692.1| hypothetical protein HEAR1393 [Herminiimonas...    80   9e-14
emb|CAL61565.2| conserved hypothetical protein [Herminiimonas ar...    80   9e-14
ref|YP_001353679.1| hypothetical protein mma_1989 [Janthinobacte...    80   1e-13

>ref|YP_003776008.1| hypothetical protein Hsero_2604 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64100.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 99

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 79/99 (79%), Positives = 83/99 (83%)

Query: 1  MDLYIYYRVDSTDTAPLLGKIKGVQAMLQARLGIAGALKRRPGEQDGLQTWMEIYQGILP 60
          MDLYIYYRV +     L GKIKGVQAMLQARLGIAGALKRRPGEQDGLQTWMEIY  I P
Sbjct: 1  MDLYIYYRVGTAQAISLFGKIKGVQAMLQARLGIAGALKRRPGEQDGLQTWMEIYPDIPP 60

Query: 61 ASAEDFTRTLDRALADSGAAALISGERHVEHFEDVAPCA 99
          A A+ F+RTL +ALAD GAA LISGERHVE FEDVAPCA
Sbjct: 61 AQADAFSRTLAQALADCGAADLISGERHVEQFEDVAPCA 99


>ref|ZP_08275262.1| hypothetical protein IMCC9480_114 [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF31268.1| hypothetical protein IMCC9480_114 [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 95

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/99 (48%), Positives = 62/99 (62%), Gaps = 4/99 (4%)

Query: 1  MDLYIYYRVDSTDTAPLLGKIKGVQAMLQARLGIAGALKRRPGEQDGLQTWMEIYQGILP 60
          MD+Y+YY + +TDTA    ++  +Q  L A   I   L+RRP E+DGLQTWMEIY    P
Sbjct: 1  MDIYVYYTIRTTDTALARQRVDSLQQRLNAGYDIRAGLRRRPEEKDGLQTWMEIY----P 56

Query: 61 ASAEDFTRTLDRALADSGAAALISGERHVEHFEDVAPCA 99
          A    F   ++RA A+ G +AL  G RHVE F +VAPCA
Sbjct: 57 AVPAGFEDVIERAAAEEGVSALAQGRRHVEQFVEVAPCA 95


>ref|YP_001099692.1| hypothetical protein HEAR1393 [Herminiimonas arsenicoxydans]
          Length = 103

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/99 (43%), Positives = 57/99 (57%), Gaps = 4/99 (4%)

Query: 1   MDLYIYYRVDSTDTAPLLGKIKGVQAMLQARLGIAGALKRRPGEQDGLQTWMEIYQGILP 60
           MDLYIYYRV + D A  L  +  +Q  L     +  ALKR P  QDG+ TWME+Y  +  
Sbjct: 9   MDLYIYYRVQAADAALFLTAVSELQHRLTRLYAVRTALKRSPVAQDGMHTWMEVYLDV-- 66

Query: 61  ASAEDFTRTLDRALADSGAAALISGERHVEHFEDVAPCA 99
              EDF   L++A+A S   + I G+RH E F D++ CA
Sbjct: 67  --NEDFAIKLEQAVAASQLPSFIDGKRHTEQFLDLSLCA 103


>emb|CAL61565.2| conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 95

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/99 (43%), Positives = 57/99 (57%), Gaps = 4/99 (4%)

Query: 1  MDLYIYYRVDSTDTAPLLGKIKGVQAMLQARLGIAGALKRRPGEQDGLQTWMEIYQGILP 60
          MDLYIYYRV + D A  L  +  +Q  L     +  ALKR P  QDG+ TWME+Y  +  
Sbjct: 1  MDLYIYYRVQAADAALFLTAVSELQHRLTRLYAVRTALKRSPVAQDGMHTWMEVYLDV-- 58

Query: 61 ASAEDFTRTLDRALADSGAAALISGERHVEHFEDVAPCA 99
             EDF   L++A+A S   + I G+RH E F D++ CA
Sbjct: 59 --NEDFAIKLEQAVAASQLPSFIDGKRHTEQFLDLSLCA 95


>ref|YP_001353679.1| hypothetical protein mma_1989 [Janthinobacterium sp. Marseille]
 gb|ABR91016.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 95

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 58/99 (58%), Gaps = 4/99 (4%)

Query: 1  MDLYIYYRVDSTDTAPLLGKIKGVQAMLQARLGIAGALKRRPGEQDGLQTWMEIYQGILP 60
          MDLYIYYRV   D   L  K+  +Q  L    GI  ALKRRP  QDG+ TWME+Y  +  
Sbjct: 1  MDLYIYYRVAVADATDLRAKVLTMQDNLARLHGIQTALKRRPEAQDGMHTWMEVYLDV-- 58

Query: 61 ASAEDFTRTLDRALADSGAAALISGERHVEHFEDVAPCA 99
            A DF   L++A+  +   ALI G+RH E F D++ CA
Sbjct: 59 --AGDFAVELEQAVQAARLPALIDGKRHTEQFLDLSLCA 95