BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2782.p         (260 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776012.1| periplasmic protein TonB, links inner and ou...   162   4e-38
ref|YP_004751001.1| ferric siderophore transport system, peripla...   129   5e-28

>ref|YP_003776012.1| periplasmic protein TonB, links inner and outer membranes
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ64104.1| periplasmic protein TonB, links inner and outer membranes, protein
           [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 169/240 (70%), Positives = 180/240 (75%), Gaps = 2/240 (0%)

Query: 21  MRHSMTLPRSAAPSSSWQDQPPAVPAGSALRWPLAVGVAVAVECAIVLLAWPKAQVPEPP 80
           MRHS+TLP S   SS   + PPAVPAGSALRWPLA+G+A+AVECAI LLAWPKAQ P P 
Sbjct: 1   MRHSLTLPLSGPSSSFRSEPPPAVPAGSALRWPLAIGLALAVECAIALLAWPKAQPPAPA 60

Query: 81  PEPVKVMKLVSIAEAPPLPEPAPPVPPPPTPKPPKPTPKPKPAPTPTPQAKAQPVPQEPA 140
           PEPVKVMKLV+IAEAPPLP P    PP P P P    PKP P P PTP   A  VP + A
Sbjct: 61  PEPVKVMKLVTIAEAPPLPAPPASTPPTPKPPPKPTPPKPSPTPKPTPVTAAPNVPAQDA 120

Query: 141 PVAQAAPPPSPAVAAKPAAPSAPPAPVPPKVDAGAVRRGLVPLLRVEPDYPPKALASNTE 200
           P      PPSP   A  A P A       +   G VRRGLVPL RVEP+YPPKALASNTE
Sbjct: 121 PAPVVRSPPSPPAPAASAPPVAAAPAPKAQ--PGEVRRGLVPLRRVEPEYPPKALASNTE 178

Query: 201 GVVVAHLTIEKDGSVSAVQIVRAQPPKLFDQAATKALMQWKFSRTDEPVLGEVELRFSLN 260
           GVVVAH++IEKDGSVSAVQIVRAQP KLFDQAATKALMQWKFSRTDEPVLGEVELRFSLN
Sbjct: 179 GVVVAHVSIEKDGSVSAVQIVRAQPAKLFDQAATKALMQWKFSRTDEPVLGEVELRFSLN 238


>ref|YP_004751001.1| ferric siderophore transport system, periplasmic binding protein
           TonB [Collimonas fungivorans Ter331]
 gb|AEK60178.1| Ferric siderophore transport system, periplasmic binding protein
           TonB [Collimonas fungivorans Ter331]
          Length = 228

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 117/219 (53%), Positives = 146/219 (66%), Gaps = 12/219 (5%)

Query: 48  SALRWPLAVGVAVAVECAIVLLAWPKAQVP--EPPPEPVKVMKLVSIAEAPPLPEPAPPV 105
           ++LRWPLA+ +A AVE  ++ L       P     P PVK+ +LV+IA+ P  P+PAP  
Sbjct: 16  TSLRWPLALLIAGAVELTLIFLVLGTHAKPVVASLPAPVKIARLVTIADVPGEPDPAPTA 75

Query: 106 PPPPTPKPPKPTPKPKPAPTPTPQAKAQPVPQEPAPVA----QAAPPPSPAVAAKPAAPS 161
           PP    + PKP  KP P P+P PQA A PV  +P   A    Q APP +  V  +  A +
Sbjct: 76  PPQKR-ESPKPAVKPLPQPSPKPQADAAPVESKPELQADSTQQEAPPAALPVVQRTQAST 134

Query: 162 APPAPVPPKVDAGAVRRGLVPLLRVEPDYPPKALASNTEGVVVAHLTIEKDGSVSAVQIV 221
           +  A  P     GAVRRG+VPL+RVEPDYP +ALA+NTEGVVVAH+TIEKDGSVS V IV
Sbjct: 135 SAKADKP-----GAVRRGIVPLVRVEPDYPARALAANTEGVVVAHVTIEKDGSVSNVNIV 189

Query: 222 RAQPPKLFDQAATKALMQWKFSRTDEPVLGEVELRFSLN 260
           RAQPPK+FDQ A +ALM+WKFS+ D   +GEVEL F+LN
Sbjct: 190 RAQPPKIFDQEAIRALMRWKFSQNDGGTVGEVELHFTLN 228