BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2781.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776013.1| biopolymer transport ExbD/TolR protein [Herb...   224   3e-57
ref|YP_004751000.1| biopolymer transport protein ExbD/TolR [Coll...   173   7e-42
emb|CAZ87928.1| putative Biopolymer transport exbD protein [Thio...   106   1e-21
ref|YP_004783558.1| biopolymer transport protein ExbD/TolR [Acid...   106   2e-21
ref|YP_004748701.1| biopolymer transport protein ExbD/TolR [Acid...   102   1e-20

>ref|YP_003776013.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64105.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae
           SmR1]
          Length = 132

 Score =  224 bits (571), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 126/132 (95%), Positives = 130/132 (98%)

Query: 1   MSRTRYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKS 60
           MSRTRYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKS
Sbjct: 1   MSRTRYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKS 60

Query: 61  LTIVVDKTGGMFFEGKPVEHDALVDQLKERARTAKLEVLVAGDKDVSLENLLHVMDVARA 120
           LTIVVDKTG MFFEGKP+EHDALV QLKERA+TAKLEVLVAGDK+VSLENLLHVMDVARA
Sbjct: 61  LTIVVDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDKEVSLENLLHVMDVARA 120

Query: 121 AGVEDIGIAAKH 132
           AG+EDIGIAAKH
Sbjct: 121 AGIEDIGIAAKH 132


>ref|YP_004751000.1| biopolymer transport protein ExbD/TolR [Collimonas fungivorans
           Ter331]
 gb|AEK60177.1| Biopolymer transport protein ExbD/TolR [Collimonas fungivorans
           Ter331]
          Length = 145

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 94/131 (71%), Positives = 112/131 (85%)

Query: 1   MSRTRYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKS 60
           MSRTRY++S EPHIEIIPMIDIMMFLLIFFMVTMLKMID SG+KINVPQA++AA LP  S
Sbjct: 14  MSRTRYMESHEPHIEIIPMIDIMMFLLIFFMVTMLKMIDASGIKINVPQASTAAPLPKTS 73

Query: 61  LTIVVDKTGGMFFEGKPVEHDALVDQLKERARTAKLEVLVAGDKDVSLENLLHVMDVARA 120
           LTI V K G +F +G+ V    L +++++++  AKLEVL+AGDK+VSLENLL VMDVARA
Sbjct: 74  LTITVKKDGDLFLDGQAVSAALLTEKIRKQSLGAKLEVLIAGDKEVSLENLLRVMDVARA 133

Query: 121 AGVEDIGIAAK 131
           AGV+DIGIAAK
Sbjct: 134 AGVDDIGIAAK 144


>emb|CAZ87928.1| putative Biopolymer transport exbD protein [Thiomonas sp. 3As]
          Length = 156

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/128 (40%), Positives = 84/128 (65%)

Query: 5   RYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKSLTIV 64
           +Y ++ +  IEIIPMIDIM FLL+FF++  L MI  +G+   +P +++A ++P   +T+ 
Sbjct: 23  KYFEAKKARIEIIPMIDIMFFLLVFFIMVTLHMIPDAGIASRLPTSSTAQSMPKPQITLA 82

Query: 65  VDKTGGMFFEGKPVEHDALVDQLKERARTAKLEVLVAGDKDVSLENLLHVMDVARAAGVE 124
           VDK+G + ++ K +    L   LK +  T  ++V +AG++DVSL+ L+ VMD  R AGV 
Sbjct: 83  VDKSGAIHYDSKVLSPQQLTALLKSKPDTDAMQVTIAGEEDVSLQQLMTVMDACRVAGVT 142

Query: 125 DIGIAAKH 132
            IG+AA+ 
Sbjct: 143 KIGLAARQ 150


>ref|YP_004783558.1| biopolymer transport protein ExbD/TolR [Acidithiobacillus
           ferrivorans SS3]
 gb|AEM47232.1| Biopolymer transport protein ExbD/TolR [Acidithiobacillus
           ferrivorans SS3]
          Length = 133

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/127 (44%), Positives = 77/127 (60%)

Query: 5   RYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKSLTIV 64
           RY +  +  +EIIPMIDIM+FLL+FF++  L+MI   GL + +P A+ A  LP    TI 
Sbjct: 4   RYFEQKKGRVEIIPMIDIMLFLLVFFIMITLQMIPDKGLNLQLPTASQAQQLPHPHYTIN 63

Query: 65  VDKTGGMFFEGKPVEHDALVDQLKERARTAKLEVLVAGDKDVSLENLLHVMDVARAAGVE 124
           +DK G +  +G   + D L   L   +   K +V +A DK V  +N +HVMD  + AGV 
Sbjct: 64  IDKDGSVNVKGHRYDLDGLQKMLATDSDPGKTQVTIAADKGVPFQNFVHVMDRCQKAGVS 123

Query: 125 DIGIAAK 131
           DIGIAAK
Sbjct: 124 DIGIAAK 130


>ref|YP_004748701.1| biopolymer transport protein ExbD/TolR [Acidithiobacillus caldus
           SM-1]
 gb|AEK58001.1| Biopolymer transport protein ExbD/TolR [Acidithiobacillus caldus
           SM-1]
          Length = 133

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 78/127 (61%)

Query: 5   RYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKSLTIV 64
           RY +  +  +EIIPMIDIM+FLL+FF++  L+MI   GL + +P+++ A  LP    TI 
Sbjct: 4   RYFEQRKGRVEIIPMIDIMLFLLVFFIMITLQMIPDQGLNLQLPKSSEAKALPRPHYTIN 63

Query: 65  VDKTGGMFFEGKPVEHDALVDQLKERARTAKLEVLVAGDKDVSLENLLHVMDVARAAGVE 124
           ++K G +  +GK  +   L   L      AK E+ +A DK V  ++ +HVMD  + AGV 
Sbjct: 64  IEKDGTVEVKGKHYDLAGLQSMLAHDGDPAKTEITIAADKAVPFQDFIHVMDACQKAGVS 123

Query: 125 DIGIAAK 131
           DIGIAAK
Sbjct: 124 DIGIAAK 130