BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2780.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776014.1| biopolymer transport protein [Herbaspirillum... 385 e-105 ref|YP_004750999.1| MotA/TolQ/ExbB proton channel [Collimonas fu... 236 2e-60 ref|YP_003911013.1| MotA/TolQ/ExbB proton channel [Burkholderia ... 146 2e-33 ref|ZP_02886225.1| MotA/TolQ/ExbB proton channel [Burkholderia g... 145 4e-33 ref|ZP_02889281.1| MotA/TolQ/ExbB proton channel [Burkholderia a... 143 2e-32 >ref|YP_003776014.1| biopolymer transport protein [Herbaspirillum seropedicae SmR1] gb|ADJ64106.1| biopolymer transport protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 223/241 (92%), Positives = 230/241 (95%) Query: 1 MSNLEQLLELSRQSMGIIPVLALLLLVVLAVSVERFIFFARCLPSGKQIDQALLRADHRS 60 MSNLEQLLELSRQSMGIIP+LALLLLVVLAVSVERFIFFARCLPSGKQIDQAL+RADHR+ Sbjct: 1 MSNLEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRN 60 Query: 61 DAALQEIAQRYRNTVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAA 120 DAALQ+IAQRYR TVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAA Sbjct: 61 DAALQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAA 120 Query: 121 ITLGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGVAANSY 180 ITLGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGVAANSY Sbjct: 121 ITLGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGVAANSY 180 Query: 181 FSKRVRLALLELDLIKLVFIKQHCLLEESIVVRQAGESPAAGQGKPVIKRAAEVVYAGAA 240 FSKRVRLALLELDLIKLVFIKQHCLLEESIV+R E+ AGQGK KR A+V YAGAA Sbjct: 181 FSKRVRLALLELDLIKLVFIKQHCLLEESIVLRHNAEAHPAGQGKAAPKRTADVAYAGAA 240 Query: 241 S 241 S Sbjct: 241 S 241 >ref|YP_004750999.1| MotA/TolQ/ExbB proton channel [Collimonas fungivorans Ter331] gb|AEK60176.1| MotA/TolQ/ExbB proton channel [Collimonas fungivorans Ter331] Length = 238 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 147/238 (61%), Positives = 183/238 (76%), Gaps = 1/238 (0%) Query: 1 MSNLEQLLELSRQSMGIIPVLALLLLVVLAVSVERFIFFARCLPSGKQIDQALLRADHRS 60 M+ +Q ++LS QSMGIIP+LAL+LL+VLAV++ER FF R +PSG +ID+ L DHR Sbjct: 1 MNAFQQFIDLSMQSMGIIPLLALILLIVLAVAIERIAFFGRTVPSGARIDRELSAIDHRQ 60 Query: 61 DAALQEIAQRYRNTVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAA 120 + AL+EIA RYR TVFG TL A V++R L + +AMDRY+DEAIVRTMP+LD+ LWL+ AA Sbjct: 61 EQALREIAVRYRATVFGGTLQAVVDARHLDTPDAMDRYVDEAIVRTMPQLDKHLWLVNAA 120 Query: 121 ITLGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGVAANSY 180 +TLGPLIGLLGTIIGITESFNVLG AG S+GAVT GIGH+L+ATGCGL+VA+ GVAANSY Sbjct: 121 VTLGPLIGLLGTIIGITESFNVLGAAGPSAGAVTGGIGHALIATGCGLIVAVVGVAANSY 180 Query: 181 FSKRVRLALLELDLIKLVFIKQHCLLEESI-VVRQAGESPAAGQGKPVIKRAAEVVYA 237 F KR RL +L+LDL+KL+ I + L + S+ VR S AA Q V AE+ A Sbjct: 181 FDKRARLTILQLDLLKLMCINRLHLTDYSVGKVRSVHGSHAAVQSAFVRPVGAELAGA 238 >ref|YP_003911013.1| MotA/TolQ/ExbB proton channel [Burkholderia sp. CCGE1003] gb|ADN61722.1| MotA/TolQ/ExbB proton channel [Burkholderia sp. CCGE1003] Length = 203 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 136/200 (68%), Gaps = 2/200 (1%) Query: 4 LEQLLELSRQSMGIIPVLALLLLVVLAVSVERFIFFARCLPSGKQIDQALLRADHRSDAA 63 L L+ S QSMG+IP+LA + L+ +++ VERF+FF+R + +GK ++ L + + + Sbjct: 2 LNTLINYSVQSMGLIPILAFIFLLGISIIVERFMFFSRAVKAGKTLEHDLKMVEPANLSD 61 Query: 64 LQEIAQRYRNTVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAAITL 123 Q++A+ Y TV G + +A++ R ++R ++E I+ MP LDR LW+L A+TL Sbjct: 62 AQKVAEHYGQTVQGELVKSALKVRGKPEA-VVERELEETIMFQMPRLDRNLWILDTAVTL 120 Query: 124 GPLIGLLGTIIGITESFNVLGTAGSSS-GAVTNGIGHSLLATGCGLLVAIAGVAANSYFS 182 GPL+GLLGTIIG+ ESFNVLGT+G+++ VT GIGH+L AT CGL +AI V +YF+ Sbjct: 121 GPLLGLLGTIIGMVESFNVLGTSGTANPNGVTGGIGHALTATACGLTIAIVCVIFLNYFN 180 Query: 183 KRVRLALLELDLIKLVFIKQ 202 KR+R+ + + DLIK + + + Sbjct: 181 KRIRMTVNQFDLIKSLLVSR 200 >ref|ZP_02886225.1| MotA/TolQ/ExbB proton channel [Burkholderia graminis C4D1M] gb|EDT08109.1| MotA/TolQ/ExbB proton channel [Burkholderia graminis C4D1M] Length = 203 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 136/200 (68%), Gaps = 2/200 (1%) Query: 4 LEQLLELSRQSMGIIPVLALLLLVVLAVSVERFIFFARCLPSGKQIDQALLRADHRSDAA 63 L L+ S QSMG+IP+LA + L+ +++ VERF+FF+R + +GK ++ L + + + Sbjct: 2 LNTLINYSVQSMGLIPLLAFIFLLGISIIVERFMFFSRAVKAGKTLEHDLKMVEPANLSD 61 Query: 64 LQEIAQRYRNTVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAAITL 123 Q++A+ Y TV G + +A++ R ++R ++E I+ MP LDR LW+L A+TL Sbjct: 62 AQKVAEHYGQTVQGELVKSALKVRGKPEA-VVERELEETIMFQMPRLDRNLWILDTAVTL 120 Query: 124 GPLIGLLGTIIGITESFNVLGTAGSSS-GAVTNGIGHSLLATGCGLLVAIAGVAANSYFS 182 GPL+GLLGTIIG+ ESFNVLGT+G+++ VT GIGH+L AT CGL +AI V +YF+ Sbjct: 121 GPLLGLLGTIIGMVESFNVLGTSGTANPNGVTGGIGHALTATACGLTIAIVCVIFLNYFN 180 Query: 183 KRVRLALLELDLIKLVFIKQ 202 KR+R+ + + DLIK + + + Sbjct: 181 KRIRMTVNQFDLIKSLLVSR 200 >ref|ZP_02889281.1| MotA/TolQ/ExbB proton channel [Burkholderia ambifaria IOP40-10] gb|EDT05130.1| MotA/TolQ/ExbB proton channel [Burkholderia ambifaria IOP40-10] Length = 203 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 87/200 (43%), Positives = 134/200 (67%), Gaps = 2/200 (1%) Query: 4 LEQLLELSRQSMGIIPVLALLLLVVLAVSVERFIFFARCLPSGKQIDQALLRADHRSDAA 63 + L+ S QSMG+IP+LA + L+ +++ VERFIFF+R + +GK ++ L + + Sbjct: 2 INTLINYSVQSMGLIPLLAFIFLLGISIIVERFIFFSRAVKAGKTLEHDLKMVEPANLGD 61 Query: 64 LQEIAQRYRNTVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAAITL 123 Q++A+ Y+ TV G + +A++ + ++R ++E I+ MP LDR LW+L A+TL Sbjct: 62 AQKVAEHYKQTVQGELVKSALKVQGKPEA-VVERELEETIMFQMPRLDRNLWILDTAVTL 120 Query: 124 GPLIGLLGTIIGITESFNVLGTAGSSS-GAVTNGIGHSLLATGCGLLVAIAGVAANSYFS 182 GPL+GLLGTIIG+ ESFNVLG +G+S+ VT GIGH+L AT CGL +AI V +YF+ Sbjct: 121 GPLLGLLGTIIGMVESFNVLGASGTSNPNGVTGGIGHALTATACGLTIAIICVIFLNYFN 180 Query: 183 KRVRLALLELDLIKLVFIKQ 202 KR+R+ + DLIK + + + Sbjct: 181 KRIRMTANQFDLIKSLLVSR 200