BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2778.p (369 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776016.1| transcription repressor for pur regulon regu... 706 0.0 ref|XP_002537104.1| HTH-type transcriptional regulator celR, put... 570 e-160 ref|YP_004750997.1| LacI family transcriptional regulator [Colli... 522 e-146 ref|YP_001767505.1| LacI family transcription regulator [Methylo... 267 2e-69 ref|YP_001753988.1| LacI family transcriptional regulator [Methy... 233 5e-59 >ref|YP_003776016.1| transcription repressor for pur regulon regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64108.1| transcription repressor for pur regulon regulator protein [Herbaspirillum seropedicae SmR1] Length = 369 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 356/369 (96%), Positives = 363/369 (98%) Query: 1 MSRLTIKDVAKAAGVSFQTVSLVLNHPEKVAPRTRELVQAAIDSLNFIPNVAARSLRNIS 60 MSRLTIKDVAKAAGVSFQTVSLVLNHPEKVAPRTRELVQAAID+LNFIPNVAARSLRNIS Sbjct: 1 MSRLTIKDVAKAAGVSFQTVSLVLNHPEKVAPRTRELVQAAIDALNFIPNVAARSLRNIS 60 Query: 61 TRTLACVMFNGSSYDERSERTQDTHYHNVVQTLTRAADRAGYTLLQRNLMREDEASLVYV 120 TRTLACVMFNGSSYDERSERTQDTHYHNVVQTLTRAADRAGYTLLQRNLMREDEASLVYV Sbjct: 61 TRTLACVMFNGSSYDERSERTQDTHYHNVVQTLTRAADRAGYTLLQRNLMREDEASLVYV 120 Query: 121 RDLFLAGRIDGMIAMVNRAGNPVVSELHRLGYPCVVYGMADPACHHVVQSDRQAGLAVVE 180 RDLFLAGRIDGMIAMVNRAGNPVVSELHRLGYPCVVYGMADPACHHVVQSDRQAGLAVVE Sbjct: 121 RDLFLAGRIDGMIAMVNRAGNPVVSELHRLGYPCVVYGMADPACHHVVQSDRQAGLAVVE 180 Query: 181 HLYRTGCRRIALVTGPQKDHEQGKSREEGVPTSSEARYFGYLDGLEKCGLTPRPEWLVTG 240 HLYR+GCRRIALVTGPQKDH+ GKSRE+GVPTSSEARYFGYLDGLEKCGLTPRPEW+VTG Sbjct: 181 HLYRSGCRRIALVTGPQKDHQPGKSREQGVPTSSEARYFGYLDGLEKCGLTPRPEWVVTG 240 Query: 241 DWSLESGYRAAAQLCHQSERPDAIFLGNDRMALGALKALYDLGVKVPQEISVVGFDNMRY 300 DWSLESGYRAAAQLCHQ+ERPDAIFLGNDRMALGALKALYDLGVKVP EISVVGFDNMRY Sbjct: 241 DWSLESGYRAAAQLCHQAERPDAIFLGNDRMALGALKALYDLGVKVPHEISVVGFDNMRY 300 Query: 301 ADFSIPSLTSVDAPMLEMCEFAVKLLLERIELRQEQRNQSGDAAAAQAALVQKMFSTHLV 360 DFSIPSLTSVDAPMLEMCEFAVKLLLERIE RQEQR+QS D AAAQAALVQKMFSTHLV Sbjct: 301 DDFSIPSLTSVDAPMLEMCEFAVKLLLERIEQRQEQRSQSADPAAAQAALVQKMFSTHLV 360 Query: 361 IRDSTRPVM 369 IRDSTRPVM Sbjct: 361 IRDSTRPVM 369 >ref|XP_002537104.1| HTH-type transcriptional regulator celR, putative [Ricinus communis] gb|EEF25279.1| HTH-type transcriptional regulator celR, putative [Ricinus communis] Length = 285 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 278/285 (97%), Positives = 284/285 (99%) Query: 1 MSRLTIKDVAKAAGVSFQTVSLVLNHPEKVAPRTRELVQAAIDSLNFIPNVAARSLRNIS 60 MSRLTIKDVAKAAGVSFQTVSLVLNHPEKVAPRTRELVQAAID+LNFIPNVAARSLRNIS Sbjct: 1 MSRLTIKDVAKAAGVSFQTVSLVLNHPEKVAPRTRELVQAAIDALNFIPNVAARSLRNIS 60 Query: 61 TRTLACVMFNGSSYDERSERTQDTHYHNVVQTLTRAADRAGYTLLQRNLMREDEASLVYV 120 TRTLACVMFNGSSYDERSERTQDTHYHNVVQTLTRAADRAGYTLLQRNLMREDEASLVYV Sbjct: 61 TRTLACVMFNGSSYDERSERTQDTHYHNVVQTLTRAADRAGYTLLQRNLMREDEASLVYV 120 Query: 121 RDLFLAGRIDGMIAMVNRAGNPVVSELHRLGYPCVVYGMADPACHHVVQSDRQAGLAVVE 180 RDLFLAGRIDGMIAMVNRAGNPVVSELHRLGYPCVVYGMADPACHHVVQSDRQAGLAVVE Sbjct: 121 RDLFLAGRIDGMIAMVNRAGNPVVSELHRLGYPCVVYGMADPACHHVVQSDRQAGLAVVE 180 Query: 181 HLYRTGCRRIALVTGPQKDHEQGKSREEGVPTSSEARYFGYLDGLEKCGLTPRPEWLVTG 240 HLYR+GCRRIALVTGPQKDH+ GKSRE+GVPTSSEARYFGYLDGLEKCGLTPRPEW+VTG Sbjct: 181 HLYRSGCRRIALVTGPQKDHQPGKSREQGVPTSSEARYFGYLDGLEKCGLTPRPEWVVTG 240 Query: 241 DWSLESGYRAAAQLCHQSERPDAIFLGNDRMALGALKALYDLGVK 285 DWSLESGYRAAAQLCHQ+ERPDAIFLGNDRMALGALKALYDLGVK Sbjct: 241 DWSLESGYRAAAQLCHQAERPDAIFLGNDRMALGALKALYDLGVK 285 >ref|YP_004750997.1| LacI family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60174.1| Transcriptional regulator, LacI family [Collimonas fungivorans Ter331] Length = 374 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 263/368 (71%), Positives = 302/368 (82%), Gaps = 12/368 (3%) Query: 1 MSRLTIKDVAKAAGVSFQTVSLVLNHPEKVAPRTRELVQAAIDSLNFIPNVAARSLRNIS 60 M+RLTIKDVAK AGVSFQTVSLVLNHPEKVAP+TRELVQ+AID+LNFIPNVAARSLRNIS Sbjct: 1 MTRLTIKDVAKLAGVSFQTVSLVLNHPEKVAPKTRELVQSAIDTLNFIPNVAARSLRNIS 60 Query: 61 TRTLACVMFNGSSYDERSERTQDTHYHNVVQTLTRAADRAGYTLLQRNLMREDEASLVYV 120 T+TLACVMFNG+SYD RSERTQDTH ++VVQTLTRAADRAGYTLLQRN M +D ASL Y Sbjct: 61 TKTLACVMFNGASYDNRSERTQDTHGNSVVQTLTRAADRAGYTLLQRNWMGDDAASLAYA 120 Query: 121 RDLFLAGRIDGMIAMVNRAGNPVVSELHRLGYPCVVYGMADPACHHVVQSDRQAGLAVVE 180 RDLFLAGRIDGMIAMV AG+ V++EL R+G+PCV+YGMADP +HVVQSDR+A LAVVE Sbjct: 121 RDLFLAGRIDGMIAMVTTAGHSVLTELQRMGFPCVIYGMADPQFNHVVQSDREAALAVVE 180 Query: 181 HLYRTGCRRIALVTGPQKDHEQGKSREEGVPTSSEARYFGYLDGLEKCGLTPRPEWLVTG 240 HL + GCRRIA VTG +K+H RE+ V T SEARY GYLDG++K GL R +W+V G Sbjct: 181 HLVQGGCRRIAFVTGARKEHAPVIRREQAVTTGSEARYIGYLDGMDKYGLPVRQDWIVPG 240 Query: 241 DWSLESGYRAAAQLCHQSERPDAIFLGNDRMALGALKALYDLGVKVPQEISVVGFDNMRY 300 DWSL+SGYRAAAQLC ++RPDAI L NDRMALGALKAL+DLG+ VP ++SVVGFDNMRY Sbjct: 241 DWSLDSGYRAAAQLCGTADRPDAIILSNDRMALGALKALHDLGLHVPNDVSVVGFDNMRY 300 Query: 301 ADFSIPSLTSVDAPMLEMCEFAVKLLLERIELRQEQRNQSGDAAAAQAALVQKMFSTHLV 360 DFSIPSLTSVD PM EM E V++LL+ IE R + LVQ++F T LV Sbjct: 301 DDFSIPSLTSVDVPMFEMSECTVRILLDCIEKR------------GSSDLVQRVFPTSLV 348 Query: 361 IRDSTRPV 368 +R STR V Sbjct: 349 VRGSTRAV 356 >ref|YP_001767505.1| LacI family transcription regulator [Methylobacterium sp. 4-46] gb|ACA15071.1| transcriptional regulator, LacI family [Methylobacterium sp. 4-46] Length = 351 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 153/365 (41%), Positives = 214/365 (58%), Gaps = 21/365 (5%) Query: 4 LTIKDVAKAAGVSFQTVSLVLNHPEKVAPRTRELVQAAIDSLNFIPNVAARSLRNISTRT 63 +TIKDVA+ AGVSFQTVSLVLNHPEKVA TRE+V A + L+F+P++AARSLR +R+ Sbjct: 1 MTIKDVARRAGVSFQTVSLVLNHPEKVARSTREMVGATMRELDFVPSLAARSLRKKPSRS 60 Query: 64 LACVMFNGSS-YDERSERTQDTHYHNVVQTLTRAADRAGYTLLQRNLMREDEASLVYVRD 122 +ACV G+ YD+ + Q+T+ V+QT DR GY L+ R + L + Sbjct: 61 IACVFSVGAQPYDDVTGMMQETYQGIVLQTFAHVTDRHGYMLVHRRWNAGEPDGLSRITS 120 Query: 123 LFLAGRIDGMIAMVNRAGNPVVSELHRLGYPCVVYGMADPACHHVVQSDRQAGLAVVEHL 182 L R+DGM+ + +R +P+++ L P V+G+ P ++++R A +V +L Sbjct: 121 LVSEARVDGMVVLADRRDDPLIASLRAKSVPFFVFGLDVPEASFAMRAERDAVRQIVGYL 180 Query: 183 YRTGCRRIALVTGPQKDHEQGKSREEGVPTSSEARYFGYLDGLEKCGLTPRPEWLVTGDW 242 RTGC+ I G + +P ++ R GY + L GL PR + +V DW Sbjct: 181 VRTGCKAICFYKGERDGRH--------LPAVAD-RLSGYREALAAAGLRPRDDLVVPCDW 231 Query: 243 SLESGYRAAAQLCHQSERPDAIFLGNDRMALGALKALYDLGVKVPQEISVVGFDNMRYAD 302 S ESGYR +L ++ RPDAI NDR+A G LKAL++ GV+VP EISVVGFDN+ Sbjct: 232 SSESGYRTTLRLLRRAPRPDAIVAANDRVAFGVLKALHEQGVRVPDEISVVGFDNLVQCA 291 Query: 303 FSIPSLTSVDAPMLEMCEFAVKLLLERIELRQEQRNQSGDAAAAQAALVQKMFSTHLVIR 362 +++P LTS++ P LEM EFAV L+E IE A QK++ LV+R Sbjct: 292 YTVPRLTSIEVPTLEMVEFAVTTLIEMIE-----------GVRAPHDPAQKLYPGRLVVR 340 Query: 363 DSTRP 367 DSTRP Sbjct: 341 DSTRP 345 >ref|YP_001753988.1| LacI family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gb|ACB23305.1| transcriptional regulator, LacI family [Methylobacterium radiotolerans JCM 2831] Length = 351 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 144/368 (39%), Positives = 203/368 (55%), Gaps = 25/368 (6%) Query: 1 MSRLTIKDVAKAAGVSFQTVSLVLNHPEKVAPRTRELVQAAIDSLNFIPNVAARSLRNIS 60 M + TIKDVA+ AGVSFQTVSLVLNHP+KVA TRE ++ A+ L+F+P++AARSLR Sbjct: 1 MGQTTIKDVARRAGVSFQTVSLVLNHPQKVARTTRETIETAMRDLDFVPSLAARSLRKKP 60 Query: 61 TRTLACVMFNGSSYDERSERT-QDTHYHNVVQTLTRAADRAGYTLLQRNLMREDEASLVY 119 +R++ACV R ++T + V+QT D+ GYTL+ R +D Sbjct: 61 SRSIACVFAPAPEPAADGSRPGEETDHGRVLQTFGTVTDQQGYTLVHRCRRGDDPDGPGR 120 Query: 120 VRDLFLAGRIDGMIAMVNRAGNPVVSELHRLGYPCVVYGMADPACHHVVQSDRQAGLAVV 179 + L R+DG++ +P++ L P VV+G+ P H+ +++R A V Sbjct: 121 IASLVSEARVDGLVVFAEGRDDPLIGLLQAKRCPFVVFGLDVPGTHYAARAERDAIHGAV 180 Query: 180 EHLYRTGCRRIALVTGPQKDHEQGKSREEGVPTSSEARYFGYLDGLEKCGLTPRPEWLVT 239 HL G R I L+TG + P + R+ GY D L + GL R +V Sbjct: 181 RHLIAAGSRSICLLTGDARR-----------PAADTERFRGYRDALAEAGLPLRDALVVP 229 Query: 240 GDWSLESGYRAAAQLCHQ--SERPDAIFLGNDRMALGALKALYDLGVKVPQEISVVGFDN 297 D ++ GYRAA L RPDA+ +D +ALGAL+AL++ GV+VP EI VVGFDN Sbjct: 230 CDGTVAGGYRAARALLETGPGARPDAVVAASDGVALGALRALHEGGVRVPAEIRVVGFDN 289 Query: 298 MRYADFSIPSLTSVDAPMLEMCEFAVKLLLERIELRQEQRNQSGDAAAAQAALVQKMFST 357 + +++PSLTSVD P+L+M FA L+E IE A L QK+F T Sbjct: 290 LAQGAYAVPSLTSVDVPVLDMVRFAFATLVELIE-----------GTRAPDDLAQKLFPT 338 Query: 358 HLVIRDST 365 LV+R+S+ Sbjct: 339 RLVVRESS 346