BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2777.p (431 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776017.1| glycerol-3-phosphate ABC transporter peripla... 691 0.0 ref|YP_004750996.1| glycerol-3-phosphate ABC transporter peripla... 458 e-127 gb|EGH11763.1| glycerol-3-phosphate ABC transporter periplasmic ... 320 4e-85 ref|ZP_07265988.1| extracellular solute-binding protein [Pseudom... 317 3e-84 gb|EFW78916.1| glycerol-3-phosphate ABC transporter, periplasmic... 317 3e-84 >ref|YP_003776017.1| glycerol-3-phosphate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64109.1| ABC-type glycerol-3-phosphate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 452 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 370/422 (87%), Positives = 390/422 (92%), Gaps = 2/422 (0%) Query: 8 AAARAQSASFEFWSSHSGPMAQAVRQLCAGFNAAQKQHQVRCVTPGSYEQTMQKTIAAYR 67 A RA +ASFEFWSSH+G MAQAVRQLCAGFNAAQ+QHQVRCV PG+YEQTMQKTIA YR Sbjct: 31 AIPRAPAASFEFWSSHAGAMAQAVRQLCAGFNAAQQQHQVRCVVPGTYEQTMQKTIATYR 90 Query: 68 AAQQPALVEIYDVGTLDMMLSGAIVPVHQLMAAHGYHVDWQDYLPAIRSYYTDAKGQFDS 127 AAQQPALVEIYDVGTLDMMLSGAIVPVHQLMA HGY VDWQDYLPAIR YYTDA+GQFDS Sbjct: 91 AAQQPALVEIYDVGTLDMMLSGAIVPVHQLMADHGYRVDWQDYLPAIRGYYTDAQGQFDS 150 Query: 128 LPFNVSTAVLYLNTSRLQQAGINTLPATWSELEQAARQLRAAGQTCPLVSDFNPWILLEQ 187 LPFNVSTAVLYLNT +L+QAGI+TLP+TW ELEQ ARQLRAAGQTCPLVSDFNPWILLEQ Sbjct: 151 LPFNVSTAVLYLNTDQLRQAGISTLPSTWRELEQTARQLRAAGQTCPLVSDFNPWILLEQ 210 Query: 188 VSTIEGAPLADQDNGHRSLATHYLFDQGLHLRFMQQVQRWHQQHLLVEAAATRTGRHTLA 247 VSTIEGAP+AD DNGH+ LA HYLFDQGLHLRFMQQ+QRWHQQHLLVEAAATRTGRHTLA Sbjct: 211 VSTIEGAPIADHDNGHQGLAAHYLFDQGLHLRFMQQLQRWHQQHLLVEAAATRTGRHTLA 270 Query: 248 FTTGECAMLLDSTSAWHAVARSGLPGLAVLPLPVHAGSARHNSVPGGASLWVMKGFDDQV 307 FTTGECAML DSTSAWHA+ARSGLP +AV PLP+HA RHNSVPGGASLWVMKGFD QV Sbjct: 271 FTTGECAMLFDSTSAWHAIARSGLPHVAVRPLPIHADGQRHNSVPGGASLWVMKGFDRQV 330 Query: 308 YAAVAAFIAYLQQPQNQRLLVRQTGYLPVSRQVAAQIMDDAGHYPASVVAGIHSLDANAG 367 YAAVAAFIAYLQQPQNQRLL RQTGYLPV+RQVAAQIMDD HYPA+VVAGIHSLDA A Sbjct: 331 YAAVAAFIAYLQQPQNQRLLARQTGYLPVTRQVAAQIMDDPDHYPAAVVAGIHSLDA-AS 389 Query: 368 QPGVGPRLGFFPQLRLAWTEQVQTALAGQQDMASALAKARRRGDALLQRFRLTYAPADSP 427 QPGVGPRLGFFPQLRLAWTEQVQ AL+GQQDMA AL+KAR+RGDALLQRFRLTYA D P Sbjct: 390 QPGVGPRLGFFPQLRLAWTEQVQMALSGQQDMAQALSKARQRGDALLQRFRLTYAGPD-P 448 Query: 428 AP 429 AP Sbjct: 449 AP 450 >ref|YP_004750996.1| glycerol-3-phosphate ABC transporter periplasmic glycerol-3-phosphate-binding protein [Collimonas fungivorans Ter331] gb|AEK60173.1| Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein [Collimonas fungivorans Ter331] Length = 439 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 228/427 (53%), Positives = 301/427 (70%), Gaps = 3/427 (0%) Query: 4 LLVLAAARAQSASFEFWSSHSGPMAQAVRQLCAGFNAAQKQHQVRCVTPGSYEQTMQKTI 63 +L L A++ASF+FW SH+GP+A A++ LC GFNA+Q++H+V C +PG+YEQTMQKTI Sbjct: 13 ILTLTVPDARAASFDFWYSHTGPIAYAIQSLCDGFNASQERHRVHCTSPGTYEQTMQKTI 72 Query: 64 AAYRAAQQPALVEIYDVGTLDMMLSGAIVPVHQLMAAHGYHVDWQDYLPAIRSYYTDAKG 123 AAYRA +QPA+VEIYD+GTLD+MLS A+ PV QLM +G +VDW+DY+ A RSYY+ + G Sbjct: 73 AAYRAGKQPAVVEIYDIGTLDLMLSNAVYPVFQLMKDNGRNVDWRDYVSAARSYYSTSAG 132 Query: 124 QFDSLPFNVSTAVLYLNTSRLQQAGINTLPATWSELEQAARQLRAAGQTCPLVSDFNPWI 183 SLPFN ST VLY NT++L AG+ ++P TW + E AA +L+AAGQTCP VSDFNPWI Sbjct: 133 DLYSLPFNTSTVVLYTNTAKLAAAGVKSVPQTWDDFEAAAGKLKAAGQTCPTVSDFNPWI 192 Query: 184 LLEQVSTIEGAPLADQDNGHRSLATHYLFDQGLHLRFMQQVQRWHQQHLLVEAAATRTGR 243 +LEQ++ ++G PLA NG L Y+F+ G+H RFM + RW + LL++AAATRTG Sbjct: 193 MLEQINAVQGEPLATGSNGRAGLGAEYIFNAGIHRRFMHDIMRWRTRGLLIDAAATRTGN 252 Query: 244 HTLAFTTGECAMLLDSTSAWHAVARSGLPGLAVLPLPVHAGSARHNSVPGGASLWVMKGF 303 TLAF GECAM++D+TSAW + +G+ V +PV+AG+ RHN+V GGASLWVMKG Sbjct: 253 QTLAFANGECAMVIDATSAWGGIKAAGIVDAGVSLIPVYAGTVRHNTVTGGASLWVMKGH 312 Query: 304 DDQVYAAVAAFIAYLQQPQNQRLLVRQTGYLPVSRQVA-AQIMDDAGHYPA--SVVAGIH 360 D +Y AVAAF YL+QPQNQ ++TGY+PV++ A + D P SV G+ Sbjct: 313 DAAIYQAVAAFFDYLRQPQNQIAFAKKTGYVPVTKTAGRALLTADHARIPGLESVDVGLA 372 Query: 361 SLDANAGQPGVGPRLGFFPQLRLAWTEQVQTALAGQQDMASALAKARRRGDALLQRFRLT 420 S+ + G RLGF PQ R WTE++Q A AG+Q + AL + + RGD LL+RF T Sbjct: 373 SMSIAGNEYSQGIRLGFLPQFRHVWTEEIQKAFAGRQSIDKALDRTKVRGDRLLRRFEET 432 Query: 421 YAPADSP 427 YA A P Sbjct: 433 YAGAKLP 439 >gb|EGH11763.1| glycerol-3-phosphate ABC transporter periplasmic glycerol-3-phosphate-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 483 Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 179/417 (42%), Positives = 253/417 (60%), Gaps = 6/417 (1%) Query: 3 LLLVLAAARAQSASFEFWSSHSGPMAQAVRQLCAGFNAAQKQ-HQVRCVTPGSYEQTMQK 61 L L+ A +A +A EFW HSG A A+ ++C FNA ++ ++ C+ G+YEQT+QK Sbjct: 11 LALLPLATQAFAAPAEFWYGHSGAAASAIAEVCKSFNAQREDGDRLHCIRQGTYEQTLQK 70 Query: 62 TIAAYRAAQQPALVEIYDVGTLDMMLSGAIVPVHQLMAAHGYHVDWQDYLPAIRSYYTDA 121 T+AAYRA PALVEIYDV T DM+L GA V +MA H +LPA+R YY+D Sbjct: 71 TVAAYRAGIGPALVEIYDVATPDMLLGGATQAVETVMADHQRAYSDDTFLPALRRYYSDD 130 Query: 122 KGQFDSLPFNVSTAVLYLNTSRLQQAGINTLPATWSELEQAARQLRAAGQTCPLVSDFNP 181 G + PF STAV Y + L AGI+ PATW + A R LR +G TCP+V++F+P Sbjct: 131 HGTLAAQPFAASTAVFYTHRKALAAAGISEPPATWEAFDTALRALRRSGHTCPVVTEFSP 190 Query: 182 WILLEQVSTIEGAPLADQDNGHRSLATHYLFDQGLHLRFMQQVQRWHQQHLLVEAAATRT 241 WI LEQ S +G P+A + G HY FD+G H+R M + RW + L+ +TR+ Sbjct: 191 WIWLEQTSAAQGTPVAIRAAG----TDHYQFDKGTHVRLMTDLARWTAEGLVRHQDSTRS 246 Query: 242 GRHTLAFTTGECAMLLDSTSAWHAVARSGLPGLAVLPLPVHAGSARHNSVPGGASLWVMK 301 G+ LAF TG+CAMLLDST +W+ + P + V LP++A + R +VPGG+SLWVM+ Sbjct: 247 GQQGLAFATGDCAMLLDSTGSWNVMHGDLEPDIEVSMLPIYANTQRRANVPGGSSLWVMR 306 Query: 302 GFDDQVYAAVAAFIAYLQQPQNQRLLVRQTGYLPVSRQVAAQIMDDAGHYPASVVAGIHS 361 G Y V+ F+A++ QP NQ + +TGYLPV+ Q AA + + P++V G+ Sbjct: 307 GHSVHDYRVVSEFLAFVLQPDNQLMFSARTGYLPVT-QAAATRLQSSAQKPSAVAVGLAV 365 Query: 362 LDANAGQPGVGPRLGFFPQLRLAWTEQVQTALAGQQDMASALAKARRRGDALLQRFR 418 L+ GQP R GF +RL W+++++ ALAG+Q + AL + R + LL F+ Sbjct: 366 LNDIDGQPSAPLRCGFITLMRLIWSQEMENALAGRQSVDHALRQTTMRANELLSLFQ 422 >ref|ZP_07265988.1| extracellular solute-binding protein [Pseudomonas syringae pv. syringae 642] Length = 438 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 177/401 (44%), Positives = 247/401 (61%), Gaps = 6/401 (1%) Query: 18 EFWSSHSGPMAQAVRQLCAGFNAAQKQH-QVRCVTPGSYEQTMQKTIAAYRAAQQPALVE 76 EFW SH G A+ LC FN+ +++ ++ CV+ GSYEQT+QKT+AAYRA PALVE Sbjct: 26 EFWYSHGGAAGSAIADLCRSFNSQREESDRLHCVSQGSYEQTLQKTVAAYRAGIGPALVE 85 Query: 77 IYDVGTLDMMLSGAIVPVHQLMAAHGYHVDWQDYLPAIRSYYTDAKGQFDSLPFNVSTAV 136 IYDV T DM+L GA PV +MA H +LPA+R YY D G + PF STAV Sbjct: 86 IYDVATPDMLLGGATRPVEAIMADHHRAYPDDTFLPALRRYYADDHGTLAAQPFAASTAV 145 Query: 137 LYLNTSRLQQAGINTLPATWSELEQAARQLRAAGQTCPLVSDFNPWILLEQVSTIEGAPL 196 LY + + L AGI+ PATW +A R L+ GQ CP+VS F PWI LEQ S +G + Sbjct: 146 LYTHRNALAAAGISEPPATWQAFAEALRALKKNGQKCPVVSAFAPWIWLEQTSAAQGTDI 205 Query: 197 ADQDNGHRSLATHYLFDQGLHLRFMQQVQRWHQQHLLVEAAATRTGRHTLAFTTGECAML 256 A + G + Y FD+G HLR M+ + +W ++ L+V ATR+G+ LAF T +CAML Sbjct: 206 AIRSAG----SDRYQFDEGPHLRLMKDLAQWTREGLVVHEDATRSGQQALAFATDDCAML 261 Query: 257 LDSTSAWHAVARSGLPGLAVLPLPVHAGSARHNSVPGGASLWVMKGFDDQVYAAVAAFIA 316 LDST AW+ V + + V LP++AGS R + PGG+SLWVM+G + Y V+ F+A Sbjct: 262 LDSTGAWNVVHSTLRSDIQVTALPIYAGSQRRANAPGGSSLWVMRGHSVRDYRLVSEFLA 321 Query: 317 YLQQPQNQRLLVRQTGYLPVSRQVAAQIMDDAGHYPASVVAGIHSLDANAGQPGVGPRLG 376 ++ QP NQ + +TGYLPV++ AA++ A P+++ G+ +L+ GQP R G Sbjct: 322 FVLQPDNQLMFSARTGYLPVTQAAAARLQSTASE-PSAITLGLTALNDIDGQPSAPLRCG 380 Query: 377 FFPQLRLAWTEQVQTALAGQQDMASALAKARRRGDALLQRF 417 F +RL W+++++ ALAG+Q + AL + R + LL F Sbjct: 381 FITLMRLIWSQEMENALAGRQSIDLALRQTTLRANELLGLF 421 >gb|EFW78916.1| glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein [Pseudomonas syringae pv. glycinea str. B076] Length = 438 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 180/417 (43%), Positives = 253/417 (60%), Gaps = 6/417 (1%) Query: 3 LLLVLAAARAQSASFEFWSSHSGPMAQAVRQLCAGFNAAQKQ-HQVRCVTPGSYEQTMQK 61 L L+ AA+ +A EFW SH G A+ LC FNA ++ ++ C+ GSYEQT+QK Sbjct: 11 LALLPFAAQVFAAPAEFWYSHGGAAGSAIADLCRSFNAQREDGDRLHCIRQGSYEQTLQK 70 Query: 62 TIAAYRAAQQPALVEIYDVGTLDMMLSGAIVPVHQLMAAHGYHVDWQDYLPAIRSYYTDA 121 T+AAYRA PALVEIYDV T DM+L GA +PV +MA H +LPA+R YY+D Sbjct: 71 TVAAYRAGIGPALVEIYDVATPDMLLGGATLPVEAIMAGHQRAYSDDTFLPALRRYYSDD 130 Query: 122 KGQFDSLPFNVSTAVLYLNTSRLQQAGINTLPATWSELEQAARQLRAAGQTCPLVSDFNP 181 G + PF STAVLY + + L AGI+ PATW +A R L+ G CP+VS+F+P Sbjct: 131 HGALAAQPFAASTAVLYTHRNALAAAGISEPPATWEAFAKALRALKKNGHACPVVSEFSP 190 Query: 182 WILLEQVSTIEGAPLADQDNGHRSLATHYLFDQGLHLRFMQQVQRWHQQHLLVEAAATRT 241 WI LEQ S +G +A + G Y FD+G HLR M + +W + L+V +TR+ Sbjct: 191 WIWLEQTSAAQGTEVAVRAAG----TERYQFDKGAHLRLMNDLAQWTAEGLVVHEDSTRS 246 Query: 242 GRHTLAFTTGECAMLLDSTSAWHAVARSGLPGLAVLPLPVHAGSARHNSVPGGASLWVMK 301 G+ LAF T +CAML+DST AW+ V + + V LP++A + R + PGG+SLWVM+ Sbjct: 247 GQQALAFATDDCAMLIDSTGAWNIVHSTLKSDIDVTALPIYANTQRRTNAPGGSSLWVMR 306 Query: 302 GFDDQVYAAVAAFIAYLQQPQNQRLLVRQTGYLPVSRQVAAQIMDDAGHYPASVVAGIHS 361 G + Y V+ F+A++ QP NQ + +TGYLPV+ Q AA + AG P++V+ G+ + Sbjct: 307 GHAARDYRLVSEFLAFVLQPDNQLVFSARTGYLPVT-QAAAARLQSAGREPSAVMVGLAA 365 Query: 362 LDANAGQPGVGPRLGFFPQLRLAWTEQVQTALAGQQDMASALAKARRRGDALLQRFR 418 L GQP R GF +RL W+++++ ALAG+Q + AL + R + LL F+ Sbjct: 366 LHDIDGQPSTPLRCGFITLMRLVWSQEMENALAGRQSVEHALRQTTLRANELLSLFQ 422