BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2776.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776018.1| glycerol-3-phosphate ABC transporter permeas... 447 e-124 ref|YP_004750995.1| SN-glycerol-3-phosphate transport system per... 345 4e-93 ref|ZP_07265987.1| glycerol-3-phosphate ABC transporter, permeas... 266 4e-69 ref|ZP_06496425.1| glycerol-3-phosphate ABC transporter, permeas... 265 5e-69 gb|EGH76724.1| glycerol-3-phosphate ABC transporter, permease pr... 265 5e-69 >ref|YP_003776018.1| glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64110.1| ABC-type glycerol-3-phosphate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 278/294 (94%), Positives = 284/294 (96%) Query: 1 MDTRPAFPARWFPLLLAAPQMLIVFLFFLWPAVKAIAWSLYLVRPFGNGSRFVGLDNYLR 60 MD RPAFP RWFPLLLA PQMLIVFLFFLWPAVKAIAWS YLVRPFGNGSRFVGLDNYLR Sbjct: 1 MDARPAFPTRWFPLLLATPQMLIVFLFFLWPAVKAIAWSFYLVRPFGNGSRFVGLDNYLR 60 Query: 61 ILTDDGFYASLRATLVFTAGSTLLAVTLALALAACLELDVRAKRLLRSIFIWPYAVAGVV 120 ILTDD FYASLRATLVFTAGSTLLAVT+ALALAACLELDVRAKRLLRSIFIWPYAVAGVV Sbjct: 61 ILTDDSFYASLRATLVFTAGSTLLAVTIALALAACLELDVRAKRLLRSIFIWPYAVAGVV 120 Query: 121 VGIVLKVLINPVTGLLAFLNHLWPGLWAPHLAGQQAMLVLIAAFAWTQVPLNFILFSAAL 180 VGIVLKVLINPVTGLLAFLN LWPG+WAPHL G QAML LIAAFAWTQVPLNFILFSAAL Sbjct: 121 VGIVLKVLINPVTGLLAFLNQLWPGVWAPHLIGAQAMLALIAAFAWTQVPLNFILFSAAL 180 Query: 181 QRIPADLTGAAAIDGAGPWRRFMDIQLPMIAPALLLAGVLNVIEAFTHGFGLVDALTQGG 240 QRIPADL GAAAIDGAGPWRRF+DIQLPMIAPALLLAGV+NVIEAFTHGFGLVDALTQGG Sbjct: 181 QRIPADLMGAAAIDGAGPWRRFIDIQLPMIAPALLLAGVINVIEAFTHGFGLVDALTQGG 240 Query: 241 PGRSTAILAYQIYSDGFIGLDLSGSSALSVILMLFIVALTVLQLRFFRQGAGRW 294 PGRSTAILAYQIYSDGFIGLDLSGSSALSV+LMLFIVALT+LQLRFFRQGAGRW Sbjct: 241 PGRSTAILAYQIYSDGFIGLDLSGSSALSVVLMLFIVALTLLQLRFFRQGAGRW 294 >ref|YP_004750995.1| SN-glycerol-3-phosphate transport system permease [Collimonas fungivorans Ter331] gb|AEK60172.1| SN-glycerol-3-phosphate transport system permease protein [Collimonas fungivorans Ter331] Length = 296 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 193/292 (66%), Positives = 227/292 (77%) Query: 1 MDTRPAFPARWFPLLLAAPQMLIVFLFFLWPAVKAIAWSLYLVRPFGNGSRFVGLDNYLR 60 M + F RW PL LAAPQ+LIVFLFF WPA KAI WS +LVRPFGNGS FVG +NYLR Sbjct: 2 MTSSATFRRRWMPLALAAPQLLIVFLFFFWPAWKAIWWSFHLVRPFGNGSVFVGAENYLR 61 Query: 61 ILTDDGFYASLRATLVFTAGSTLLAVTLALALAACLELDVRAKRLLRSIFIWPYAVAGVV 120 IL D+ FY+SL+AT++FTAGS LLA+ +AL LA C++L++R +++ R FIWPYAVAG Sbjct: 62 ILGDESFYSSLQATVIFTAGSVLLAIFIALLLAGCVQLNLRGRKIFRHFFIWPYAVAGAA 121 Query: 121 VGIVLKVLINPVTGLLAFLNHLWPGLWAPHLAGQQAMLVLIAAFAWTQVPLNFILFSAAL 180 +G++LK INPV G +A +N LWPGLW PHL G +AML LI AFAWTQVP NF++F AAL Sbjct: 122 LGVMLKFFINPVLGPMAVVNSLWPGLWDPHLNGSEAMLALIFAFAWTQVPFNFVVFVAAL 181 Query: 181 QRIPADLTGAAAIDGAGPWRRFMDIQLPMIAPALLLAGVLNVIEAFTHGFGLVDALTQGG 240 Q +P D AAAIDGAGP RRF DIQLP+IAP A V+NVIEAFTH FGLVD LTQGG Sbjct: 182 QTVPDDYLAAAAIDGAGPVRRFFDIQLPLIAPFAFFAAVINVIEAFTHSFGLVDTLTQGG 241 Query: 241 PGRSTAILAYQIYSDGFIGLDLSGSSALSVILMLFIVALTVLQLRFFRQGAG 292 PG +T IL Y+I+SDGF+GLDLSGSSALSVI+ML IV LT LQ FF G Sbjct: 242 PGGATNILVYKIFSDGFVGLDLSGSSALSVIMMLCIVVLTALQFHFFSDRMG 293 >ref|ZP_07265987.1| glycerol-3-phosphate ABC transporter, permease protein [Pseudomonas syringae pv. syringae 642] Length = 297 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 158/294 (53%), Positives = 210/294 (71%), Gaps = 4/294 (1%) Query: 1 MDTRPAFPARWFPLLLAAPQMLIVFLFFLWPAVKAIAWSLYLVRPFGNGSRFVGLDNYLR 60 M R FP LL A PQ+L + LFF WPAV+AI WS +LV PFG FVGL NY R Sbjct: 1 MKPRAHFPQPRLALLFALPQLLALGLFFYWPAVQAIWWSFHLVPPFGGNEIFVGLSNYWR 60 Query: 61 ILTDDGFYASLRATLVFTAGSTLLAVTLALALAACLELDVRAKRLLRSIFIWPYAVAGVV 120 +L D G ASL +TLVF+ S +L++ +AL LA CLEL +R + R++ IWPYAV+G Sbjct: 61 VLKDPGVLASLGSTLVFSLSSVVLSILIALVLALCLELKLRGNSMFRNLLIWPYAVSGAT 120 Query: 121 VGIVLKVLINPVTGLLAFLNHLWPGLWAPHLAGQQAMLVLIAAFAWTQVPLNFILFSAAL 180 +GIV VL NPV G+ A+LN + PG WAP+ + Q+ML+LI A+AW VP NF++ A+L Sbjct: 121 IGIVFHVLANPVMGIFAWLNAIAPGTWAPYSSPIQSMLLLIVAYAWCLVPFNFVMLVASL 180 Query: 181 QRIPADLTGAAAIDGAGPWRRFMDIQLPMIAPALLLAGVLNVIEAFTHGFGLVDALTQGG 240 + +P D AAA+DGAGP RR +DIQLP+IAP LL V++++E+ ++ FGLVD LTQGG Sbjct: 181 KSVPDDYLAAAALDGAGPLRRMLDIQLPLIAPYLLFVFVIDLLESLSNSFGLVDTLTQGG 240 Query: 241 PGRSTAILAYQIYSDGFIGLDLSGSSALSVILMLFIVALTVLQL----RFFRQG 290 PG +T +LAY+IY+DGF+GLDL+GSS LSV+++L +VAL+V Q RF R+G Sbjct: 241 PGDTTNVLAYKIYTDGFMGLDLAGSSTLSVLMLLAVVALSVAQFKLLSRFQRRG 294 >ref|ZP_06496425.1| glycerol-3-phosphate ABC transporter, permease protein [Pseudomonas syringae pv. syringae FF5] Length = 297 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 159/294 (54%), Positives = 210/294 (71%), Gaps = 4/294 (1%) Query: 1 MDTRPAFPARWFPLLLAAPQMLIVFLFFLWPAVKAIAWSLYLVRPFGNGSRFVGLDNYLR 60 M R FP LL A PQ+L + LFF WPAV+AI WS +LV PFG FVGL NY R Sbjct: 1 MKPRAHFPQPRLALLFALPQLLALGLFFYWPAVQAIWWSFHLVPPFGGNEIFVGLSNYWR 60 Query: 61 ILTDDGFYASLRATLVFTAGSTLLAVTLALALAACLELDVRAKRLLRSIFIWPYAVAGVV 120 +L D G ASL +TLVF+ S +L++ +AL LA CLEL +R L R++ IWPYAV+G Sbjct: 61 VLKDPGVLASLGSTLVFSLSSVVLSILIALVLALCLELKLRGNALFRNLLIWPYAVSGAT 120 Query: 121 VGIVLKVLINPVTGLLAFLNHLWPGLWAPHLAGQQAMLVLIAAFAWTQVPLNFILFSAAL 180 +GIV VL NPV G+ A+LN + PG WAP+ + Q+ML+LI A+AW VP NF++ A+L Sbjct: 121 IGIVFHVLANPVMGIFAWLNAIAPGTWAPYSSPIQSMLLLIVAYAWCLVPFNFVMLVASL 180 Query: 181 QRIPADLTGAAAIDGAGPWRRFMDIQLPMIAPALLLAGVLNVIEAFTHGFGLVDALTQGG 240 + +P D AAA+DGAGP RR +DIQLP+IAP LL V++++E+ ++ FGLVD LTQGG Sbjct: 181 KSVPDDYLAAAALDGAGPLRRMLDIQLPLIAPYLLFVFVIDLLESLSNSFGLVDTLTQGG 240 Query: 241 PGRSTAILAYQIYSDGFIGLDLSGSSALSVILMLFIVALTVLQL----RFFRQG 290 PG +T +LAY+IY+DGF+GLDL+GSS LSV+++L +VAL+V Q RF R+G Sbjct: 241 PGDTTNVLAYKIYTDGFMGLDLAGSSTLSVLMLLAVVALSVAQFKLLSRFQRRG 294 >gb|EGH76724.1| glycerol-3-phosphate ABC transporter, permease protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 297 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 158/294 (53%), Positives = 210/294 (71%), Gaps = 4/294 (1%) Query: 1 MDTRPAFPARWFPLLLAAPQMLIVFLFFLWPAVKAIAWSLYLVRPFGNGSRFVGLDNYLR 60 M R FP LL A PQ+L + LFF WPAV+AI WS +LV PFG FVGL NY R Sbjct: 1 MKPRAHFPQPRLALLFALPQLLALGLFFYWPAVQAIWWSFHLVPPFGGNEIFVGLSNYWR 60 Query: 61 ILTDDGFYASLRATLVFTAGSTLLAVTLALALAACLELDVRAKRLLRSIFIWPYAVAGVV 120 +L D G ASL +TLVF+ S +L++ +AL LA CLEL +R + R++ IWPYAV+G Sbjct: 61 VLKDPGVLASLGSTLVFSLSSVVLSIVIALVLALCLELKLRGNAVFRNLLIWPYAVSGAT 120 Query: 121 VGIVLKVLINPVTGLLAFLNHLWPGLWAPHLAGQQAMLVLIAAFAWTQVPLNFILFSAAL 180 +GIV VL NPV G+ A+LN + PG WAP+ + Q+ML+LI A+AW VP NF++ A+L Sbjct: 121 IGIVFHVLANPVMGIFAWLNAIAPGTWAPYSSPIQSMLLLIVAYAWCLVPFNFVMLVASL 180 Query: 181 QRIPADLTGAAAIDGAGPWRRFMDIQLPMIAPALLLAGVLNVIEAFTHGFGLVDALTQGG 240 + +P D AAA+DGAGP RR +DIQLP+IAP LL V++++E+ ++ FGLVD LTQGG Sbjct: 181 KSVPDDYLAAAALDGAGPLRRMLDIQLPLIAPYLLFVFVIDLLESLSNSFGLVDTLTQGG 240 Query: 241 PGRSTAILAYQIYSDGFIGLDLSGSSALSVILMLFIVALTVLQL----RFFRQG 290 PG +T +LAY+IY+DGF+GLDL+GSS LSV+++L +VAL+V Q RF R+G Sbjct: 241 PGDTTNVLAYKIYTDGFMGLDLAGSSTLSVLMLLAVVALSVAQFKLLSRFQRRG 294