BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2775.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776019.1| glycerol-3-phosphate ABC transporter permeas... 428 e-118 ref|YP_004750994.1| SN-glycerol-3-phosphate transport system per... 358 6e-97 ref|ZP_04585932.1| glycerol-3-phosphate ABC transporter permease... 312 3e-83 gb|EGH20741.1| glycerol-3-phosphate ABC transporter permease [Ps... 311 1e-82 gb|EGH92520.1| glycerol-3-phosphate ABC transporter permease [Ps... 309 4e-82 >ref|YP_003776019.1| glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64111.1| ABC-type glycerol-3-phosphate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 273/298 (91%), Positives = 289/298 (96%) Query: 1 MVERHPRMTALAYCILGLGVVLALGPLYLILCSASVSSQQWISQGMPLMPGTALPDNLRE 60 MVERHPRMTALAYC+LGLG++LALGPLYLILCSASV+SQ WISQGMPL PGTAL +NLRE Sbjct: 1 MVERHPRMTALAYCVLGLGLLLALGPLYLILCSASVTSQAWISQGMPLTPGTALLENLRE 60 Query: 61 VAQRIDLWRYLFNSLLVAALVVTGKLLLSSVTAFAVTYFQPRCRGLILVLLFSALLLPLE 120 VAQRIDLWRYLFNSLLVA+LVV+GKLLLSSVTAFAV+YF+PRCRGLILVLLFSALLLPLE Sbjct: 61 VAQRIDLWRYLFNSLLVASLVVSGKLLLSSVTAFAVSYFRPRCRGLILVLLFSALLLPLE 120 Query: 121 VRIVPTYAAASDLFEPLRSLLQALGLSGQHAVPSINLINTYAGLSLPLVASATGTFLFLQ 180 VRIVPTYAAASDL EPLRSLLQAL LSGQ AVPSI+L+NTYAGLSLPLVASATGTFLFLQ Sbjct: 121 VRIVPTYAAASDLLEPLRSLLQALDLSGQQAVPSISLVNTYAGLSLPLVASATGTFLFLQ 180 Query: 181 FYRTIPPELVEAARIDGTGPWRFYVDILLPLSKTNFAALGSIVFINTWKDYMWPLVITSH 240 FYRTIPPELVEAARIDG GPWRFYVDILLPLSKTNFAALG+IVFI+TWKDYMWPLVITSH Sbjct: 181 FYRTIPPELVEAARIDGAGPWRFYVDILLPLSKTNFAALGAIVFISTWKDYMWPLVITSH 240 Query: 241 DQMRTITLALASFLPVESGQMPQWNLLMAAALVAIVIPAVFVVAAQRWFVKGIVGTEK 298 +QMRTITLA+ASFLPVESGQMPQWNLLMAAAL AI +PAVFVVAAQRWFVKGIVGTEK Sbjct: 241 EQMRTITLAMASFLPVESGQMPQWNLLMAAALAAIAVPAVFVVAAQRWFVKGIVGTEK 298 >ref|YP_004750994.1| SN-glycerol-3-phosphate transport system permease [Collimonas fungivorans Ter331] gb|AEK60171.1| SN-glycerol-3-phosphate transport system permease protein [Collimonas fungivorans Ter331] Length = 305 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 198/305 (64%), Positives = 244/305 (80%), Gaps = 7/305 (2%) Query: 1 MVERHPRMTALAYCILGLGVVLALGPLYLILCSASVSSQQWISQGMPLMPGTALPDNLRE 60 M+ER P +TA AY IL LG++ A+GPLYL+LCSASVS+QQ +S G+ L+PG L DNL+ Sbjct: 1 MIERRPLLTAFAYAILILGLIFAIGPLYLVLCSASVSNQQLLSNGIALLPGPQLIDNLQA 60 Query: 61 VAQRIDLWRYLFNSLLVAALVVTGKLLLSSVTAFAVTYFQPRCRGLILVLLFSALLLPLE 120 VA+R D+ R LFNSL+V++LVV GKL LSS+TAFAV YF+ R LI LF+ LLLPLE Sbjct: 61 VARRTDIGRQLFNSLMVSSLVVIGKLALSSITAFAVVYFRSPFRPLIFWTLFATLLLPLE 120 Query: 121 VRIVPTYAAASDLFEPLRSLLQALGL-------SGQHAVPSINLINTYAGLSLPLVASAT 173 VRI+PTYA ASDLFEPL+++LQ+ GL +G PS+NL+NTY+GLSLPL+ASAT Sbjct: 121 VRIIPTYAVASDLFEPLKTILQSTGLDTLIASVAGIRIEPSLNLLNTYSGLSLPLIASAT 180 Query: 174 GTFLFLQFYRTIPPELVEAARIDGTGPWRFYVDILLPLSKTNFAALGSIVFINTWKDYMW 233 GTFLF QFY+TIPPEL EAA +DG GP RF++DILLPLSKTNFAALG+IVFI+TWKDYMW Sbjct: 181 GTFLFRQFYQTIPPELSEAALMDGAGPIRFFIDILLPLSKTNFAALGTIVFISTWKDYMW 240 Query: 234 PLVITSHDQMRTITLALASFLPVESGQMPQWNLLMAAALVAIVIPAVFVVAAQRWFVKGI 293 PLV+TS + MRT+ L +A+FLP ESGQ P+WNLLMAAAL A + P + + QRWFVKG+ Sbjct: 241 PLVVTSQENMRTVVLGMATFLPTESGQWPEWNLLMAAALFAFIPPMIVIALMQRWFVKGL 300 Query: 294 VGTEK 298 +G K Sbjct: 301 IGVGK 305 >ref|ZP_04585932.1| glycerol-3-phosphate ABC transporter permease [Pseudomonas syringae pv. oryzae str. 1_6] gb|EGI00378.1| glycerol-3-phosphate ABC transporter permease [Pseudomonas syringae pv. oryzae str. 1_6] Length = 297 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 180/298 (60%), Positives = 232/298 (77%), Gaps = 1/298 (0%) Query: 1 MVERHPRMTALAYCILGLGVVLALGPLYLILCSASVSSQQWISQGMPLMPGTALPDNLRE 60 M ER+ + A AY +L LG++ ALGPLYL CSA+VS+ Q SQG+ ++PG L NL + Sbjct: 1 MNERNRLLDAGAYLLLILGLIFALGPLYLAFCSATVSNSQLFSQGLAVIPGDQLLTNLAQ 60 Query: 61 VAQRIDLWRYLFNSLLVAALVVTGKLLLSSVTAFAVTYFQPRCRGLILVLLFSALLLPLE 120 V QR+DL R L NSLLVA LVV GKL LS++TAFAV YF+ R +I + ALLLPLE Sbjct: 61 VTQRLDLLRLLGNSLLVATLVVIGKLTLSALTAFAVVYFRSRYTSVIFFAVLGALLLPLE 120 Query: 121 VRIVPTYAAASDLFEPLRSLLQALGLSGQHAVPSINLINTYAGLSLPLVASATGTFLFLQ 180 VRI+PTY+ ASDL P+RS+LQ LG+ VP+INL+++Y GL+LPL+ASATGTFLF Q Sbjct: 121 VRIIPTYSVASDLLGPVRSVLQWLGIQWL-PVPTINLLDSYPGLALPLIASATGTFLFRQ 179 Query: 181 FYRTIPPELVEAARIDGTGPWRFYVDILLPLSKTNFAALGSIVFINTWKDYMWPLVITSH 240 FY+T+P ELVEAAR+DG GPWRF++DILLPLSKTNFAALG++VFI WKDY+WPLV T+ Sbjct: 180 FYQTLPAELVEAARMDGAGPWRFFIDILLPLSKTNFAALGTLVFIGAWKDYLWPLVATNR 239 Query: 241 DQMRTITLALASFLPVESGQMPQWNLLMAAALVAIVIPAVFVVAAQRWFVKGIVGTEK 298 + MRT+ L +ASFLP ++ Q+P+WNLLMAAA+V+++ P + + QRWFVKG++G K Sbjct: 240 EDMRTLVLGVASFLPTDNTQIPEWNLLMAAAVVSMLPPVLVIAIMQRWFVKGLIGVGK 297 >gb|EGH20741.1| glycerol-3-phosphate ABC transporter permease [Pseudomonas syringae pv. mori str. 301020] Length = 297 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 182/298 (61%), Positives = 236/298 (79%), Gaps = 1/298 (0%) Query: 1 MVERHPRMTALAYCILGLGVVLALGPLYLILCSASVSSQQWISQGMPLMPGTALPDNLRE 60 M+ERH + A AY +L LG+V ALGPLY+ +CSA+VS+ Q + G+ L+PG L +NL++ Sbjct: 1 MIERHRLIDAGAYLLLTLGLVFALGPLYVAVCSATVSNPQLFAHGLALIPGDQLLENLQQ 60 Query: 61 VAQRIDLWRYLFNSLLVAALVVTGKLLLSSVTAFAVTYFQPRCRGLILVLLFSALLLPLE 120 V +R+DL R L NSLLVA LVV GKL LS++TAFAV YF+ R +I + ALLLPLE Sbjct: 61 VTRRLDLLRLLGNSLLVATLVVIGKLTLSALTAFAVVYFRSRYTSVIFFAVLGALLLPLE 120 Query: 121 VRIVPTYAAASDLFEPLRSLLQALGLSGQHAVPSINLINTYAGLSLPLVASATGTFLFLQ 180 VRI+PTYA ASDLF PLR+LLQ LG+ +P+INL+++Y GL+LPL+ASATGTFLF Q Sbjct: 121 VRIIPTYAVASDLFGPLRNLLQWLGIQWL-PMPTINLLDSYTGLALPLIASATGTFLFRQ 179 Query: 181 FYRTIPPELVEAARIDGTGPWRFYVDILLPLSKTNFAALGSIVFINTWKDYMWPLVITSH 240 FY+T+P ELVEAAR+DG GPWRF+VDILLPLSKTNFAALG++VFI WKDY+WPLV T+ Sbjct: 180 FYQTLPAELVEAARMDGAGPWRFFVDILLPLSKTNFAALGTLVFIGAWKDYLWPLVATNR 239 Query: 241 DQMRTITLALASFLPVESGQMPQWNLLMAAALVAIVIPAVFVVAAQRWFVKGIVGTEK 298 + MRT+ L +ASFLP ++ Q+P+WNLLMAAA+V+++ P + + QRWFVKG++G K Sbjct: 240 EDMRTLVLGVASFLPTDATQVPEWNLLMAAAVVSMLPPILVIALMQRWFVKGLIGVGK 297 >gb|EGH92520.1| glycerol-3-phosphate ABC transporter permease [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 297 Score = 309 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 182/298 (61%), Positives = 235/298 (78%), Gaps = 1/298 (0%) Query: 1 MVERHPRMTALAYCILGLGVVLALGPLYLILCSASVSSQQWISQGMPLMPGTALPDNLRE 60 M+ERH + A AY +L LG+V ALGPLY+ +CSA+VS+ Q + G+ L+PG L +NL++ Sbjct: 1 MIERHRLIDAGAYLLLTLGLVFALGPLYVAVCSATVSNPQLFAHGLALIPGDQLLENLQQ 60 Query: 61 VAQRIDLWRYLFNSLLVAALVVTGKLLLSSVTAFAVTYFQPRCRGLILVLLFSALLLPLE 120 V +R+DL R L NSLLVA LVV GKL LS++TAFAV YF+ R +I + ALLLPLE Sbjct: 61 VTRRLDLLRLLGNSLLVATLVVIGKLTLSALTAFAVVYFRSRYTSVIFFAVLGALLLPLE 120 Query: 121 VRIVPTYAAASDLFEPLRSLLQALGLSGQHAVPSINLINTYAGLSLPLVASATGTFLFLQ 180 VRI+PTYA ASDL PLR+LLQ LG+ VP+INL+++Y GL+LPL+ASATGTFLF Q Sbjct: 121 VRIIPTYAVASDLLGPLRNLLQWLGIQWL-PVPTINLLDSYTGLALPLIASATGTFLFRQ 179 Query: 181 FYRTIPPELVEAARIDGTGPWRFYVDILLPLSKTNFAALGSIVFINTWKDYMWPLVITSH 240 FY+T+P ELVEAAR+DG GPWRF+VDILLPLSKTNFAALG++VFI WKDY+WPLV T+ Sbjct: 180 FYQTLPAELVEAARMDGAGPWRFFVDILLPLSKTNFAALGTLVFIGAWKDYLWPLVATNR 239 Query: 241 DQMRTITLALASFLPVESGQMPQWNLLMAAALVAIVIPAVFVVAAQRWFVKGIVGTEK 298 + MRT+ L +ASFLP ++ Q+P+WNLLMAAA+V+++ P + + QRWFVKG++G K Sbjct: 240 EDMRTLVLGVASFLPTDATQVPEWNLLMAAAVVSMLPPILVIALMQRWFVKGLIGVGK 297