BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2773.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776020.1| intracellular protease/amidase [Herbaspirill... 380 e-104 ref|ZP_01301899.1| hypothetical protein SKA58_02455 [Sphingomona... 231 7e-59 ref|ZP_08387055.1| DJ-1/PfpI family protein [Sphingomonas sp. S1... 228 5e-58 ref|YP_001603077.1| intracellular protease/amidase [Gluconacetob... 224 1e-56 ref|YP_002275347.1| ThiJ/PfpI domain-containing protein [Glucona... 223 2e-56 >ref|YP_003776020.1| intracellular protease/amidase [Herbaspirillum seropedicae SmR1] emb|CAM32588.1| Intracellular protease/amidase protein [Herbaspirillum seropedicae] gb|ADJ64112.1| intracellular protease/amidase protein [Herbaspirillum seropedicae SmR1] Length = 232 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 202/232 (87%), Positives = 213/232 (91%) Query: 12 MKKPNILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGASVVIASTAGGKAPIDPGS 71 M + ILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGA VV+ASTAGG+APIDPGS Sbjct: 1 MSQAKILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGS 60 Query: 72 VKPQGENDAIVERMLADAELQQRIAATRALGEIEVGAFDAVFFPGGHGTMWDLPTDANVK 131 VKP+GENDAIVERMLADA+LQ+ IA TR LGE+ V FDAVFFPGGHGTMWDLP DA+VK Sbjct: 61 VKPRGENDAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDAHVK 120 Query: 132 KTVESAYAAGKFIASVCHGAAGLVSAVKADGKPMVAGKRVNSFTDAEEREVGLAEVVPFL 191 VE+AYA GKF+ASVCHGAAGLVSAV+ADGKPMV G RVNSFTDAEEREVGLA VVPFL Sbjct: 121 AIVEAAYAGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFL 180 Query: 192 LESRLRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALELGA 243 LESRLRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEAL L A Sbjct: 181 LESRLRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALALRA 232 >ref|ZP_01301899.1| hypothetical protein SKA58_02455 [Sphingomonas sp. SKA58] gb|EAT10604.1| hypothetical protein SKA58_02455 [Sphingomonas sp. SKA58] Length = 231 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 122/224 (54%), Positives = 153/224 (68%) Query: 17 ILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGASVVIASTAGGKAPIDPGSVKPQG 76 ILM+ TS+ RM +PTG+W EEL PYYA DAGA V +AS GG P+D SV G Sbjct: 4 ILMVATSADRMTPGTEPTGVWLEELTTPYYAFRDAGAEVTLASIKGGAIPVDQRSVNADG 63 Query: 77 ENDAIVERMLADAELQQRIAATRALGEIEVGAFDAVFFPGGHGTMWDLPTDANVKKTVES 136 ENDA VER L D L+ +A+T I+ +DA+F PGGHGTM+D P + + VE Sbjct: 64 ENDASVERYLKDEALKGEVASTLVFTSIDPAGYDALFLPGGHGTMFDYPVSDELARLVER 123 Query: 137 AYAAGKFIASVCHGAAGLVSAVKADGKPMVAGKRVNSFTDAEEREVGLAEVVPFLLESRL 196 GK +A+VCHG AGLVSA KADG P VAG+RV FTD+EER VGL + VPFLLE+RL Sbjct: 124 FDREGKIVAAVCHGPAGLVSAKKADGTPFVAGRRVAGFTDSEERAVGLDQAVPFLLETRL 183 Query: 197 RELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALE 240 +ELGG EG ++ FA+RDG L+TGQNP S+ AE+++EAL+ Sbjct: 184 KELGGKHEGGPDFAPFALRDGNLVTGQNPASATLTAELVMEALK 227 >ref|ZP_08387055.1| DJ-1/PfpI family protein [Sphingomonas sp. S17] gb|EGI57086.1| DJ-1/PfpI family protein [Sphingomonas sp. S17] Length = 226 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 122/225 (54%), Positives = 151/225 (67%) Query: 19 MIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGASVVIASTAGGKAPIDPGSVKPQGEN 78 MI TS+ RM +PTG+W EEL PYYA D GA V +AS GG P+D SV GEN Sbjct: 1 MIATSADRMTPGTEPTGVWLEELTTPYYAFRDGGADVTLASIKGGAIPVDQRSVNADGEN 60 Query: 79 DAIVERMLADAELQQRIAATRALGEIEVGAFDAVFFPGGHGTMWDLPTDANVKKTVESAY 138 DA VER L D L+ +A T A I+ +DAVF PGGHGTM+D P + + VE Sbjct: 61 DASVERYLKDEALKAEVADTLAFTSIDASVYDAVFLPGGHGTMFDYPGSEELARLVERFD 120 Query: 139 AAGKFIASVCHGAAGLVSAVKADGKPMVAGKRVNSFTDAEEREVGLAEVVPFLLESRLRE 198 GK +A+VCHG AGLVSA K DG P VAG+RV +FTD+EER VGL + VPFLLE+R++E Sbjct: 121 REGKIVAAVCHGPAGLVSAKKPDGTPFVAGRRVAAFTDSEERAVGLDQAVPFLLETRMKE 180 Query: 199 LGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALELGA 243 LG EG ++Q FA+RDG L+TGQNP S+ R AE+++EAL A Sbjct: 181 LGAHHEGGPDFQPFALRDGNLVTGQNPASATRTAELVMEALTAKA 225 >ref|YP_001603077.1| intracellular protease/amidase [Gluconacetobacter diazotrophicus PAl 5] emb|CAP56786.1| putative intracellular protease/amidase [Gluconacetobacter diazotrophicus PAl 5] Length = 260 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 114/234 (48%), Positives = 157/234 (67%) Query: 7 EERNTMKKPNILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGASVVIASTAGGKAP 66 E++ + NILMI TS+ ++G + TG+W EEL P+YA D G V +AS GG P Sbjct: 26 EKQGGKTRMNILMIATSADKLGQSGHATGVWLEELTTPFYAFRDGGGEVTLASIEGGAIP 85 Query: 67 IDPGSVKPQGENDAIVERMLADAELQQRIAATRALGEIEVGAFDAVFFPGGHGTMWDLPT 126 ID SVK G+N+A VER L+D + R+A T I++ FDAVF PGGHGTM D P Sbjct: 86 IDTRSVKEAGQNEASVERYLSDPAFRHRVADTPKFTNIDLSGFDAVFLPGGHGTMTDYPE 145 Query: 127 DANVKKTVESAYAAGKFIASVCHGAAGLVSAVKADGKPMVAGKRVNSFTDAEEREVGLAE 186 ++ + + +E +G+ +++VCHG AGL+SA KADG P VAG+RV++F D+EER VGL Sbjct: 146 NSALARLIEQFDRSGRIVSAVCHGPAGLLSARKADGTPFVAGRRVSAFADSEERAVGLEH 205 Query: 187 VVPFLLESRLRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALE 240 VPFLLE RLR G ++E ++ FAI+DG L+TGQNP S+ RVA +++E L+ Sbjct: 206 TVPFLLEDRLRASGALYERGPDFTSFAIQDGNLLTGQNPASAARVANLVMERLK 259 >ref|YP_002275347.1| ThiJ/PfpI domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gb|ACI50732.1| ThiJ/PfpI domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 267 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 120/233 (51%), Positives = 154/233 (66%) Query: 8 ERNTMKKPNILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGASVVIASTAGGKAPI 67 +R + ILMI TS+ R+G TG+W EEL P+YA DAGA V +AS AGG PI Sbjct: 34 KRGGKTQMKILMIATSADRLGQGGHATGVWLEELTTPFYAFQDAGAEVTLASIAGGTVPI 93 Query: 68 DPGSVKPQGENDAIVERMLADAELQQRIAATRALGEIEVGAFDAVFFPGGHGTMWDLPTD 127 D SVK G+N+A V+R LAD L+Q +AAT I+ FDAVF PGGHGTM D P + Sbjct: 94 DTRSVKEVGQNEASVDRYLADPALRQTVAATPKFTAIDAAGFDAVFLPGGHGTMTDYPEN 153 Query: 128 ANVKKTVESAYAAGKFIASVCHGAAGLVSAVKADGKPMVAGKRVNSFTDAEEREVGLAEV 187 + +E G+ +++VCHG AGL++A K DG P VAG+RV++F D+EER VGL Sbjct: 154 LALAHLIEQFDRNGRIVSAVCHGPAGLLTARKPDGTPFVAGRRVSAFADSEERAVGLEHA 213 Query: 188 VPFLLESRLRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALE 240 VPFLLE RLR LG V+E ++ FAI DG LITGQNP S+ RVA +++E L+ Sbjct: 214 VPFLLEDRLRALGAVYEQGPDFASFAISDGNLITGQNPASAARVAALVMERLK 266