BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2772.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776021.1| LysR family transcription regulator protein ... 532 e-149 ref|ZP_08520691.1| LysR family transcription regulator protein [... 404 e-111 ref|YP_001354012.1| LysR family transcriptional regulator [Janth... 340 1e-91 ref|NP_744650.1| LysR family transcriptional regulator [Pseudomo... 329 3e-88 gb|EGP47482.1| LysR family transcriptional regulator [Achromobac... 327 1e-87 >ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64113.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 270/301 (89%), Positives = 288/301 (95%) Query: 1 MRNFDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLEARLGVRLFARTTRQ 60 MR+FDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLE+RLGVRLFARTTRQ Sbjct: 1 MRSFDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQ 60 Query: 61 IRLTREGELYHEQCRQALEQIAEAERILTGQQKVPSGPLRISVGTPYAHYRLLPLLPRFQ 120 IRLTREGELY +QC+QALEQIA+AERILTGQQKVPSG LRISVGTPYAHYRLLPLLPRFQ Sbjct: 61 IRLTREGELYRDQCQQALEQIADAERILTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQ 120 Query: 121 AAFPQIEVELSIANRVIDFVEEGYDLAIRLGVPQDSRLIAHTLEDATLGVFAAPSYLTRR 180 A+PQIEVELSIANRV+DFVEEGYDLAIRLGVP DSRLIAHTLE+ATLG+FAAP+YL RR Sbjct: 121 QAYPQIEVELSIANRVVDFVEEGYDLAIRLGVPPDSRLIAHTLEEATLGLFAAPAYLARR 180 Query: 181 GTPDSVEALKQHDCIQFILPSTGRAMPWIFKDGQGRDMDFHFRSRQRIHDDVLGCVNWAI 240 G P S+ L+QHDCIQFILPS+GRAMPWIFKD QGRDMDFHF+SRQRIHDDVLGCVNWAI Sbjct: 181 GQPRSIAELEQHDCIQFILPSSGRAMPWIFKDAQGRDMDFHFKSRQRIHDDVLGCVNWAI 240 Query: 241 AGGGLFQIYHFIAQAAVQRGELVEVLQSAGHRTRRFSILYPHNRHLSARVRAFVDFVMQA 300 AGGGLFQIYHFIA AAV+RGELVEVLQ AG+RTRRFSILYPHNRHLSARVRAFV+F+ QA Sbjct: 241 AGGGLFQIYHFIADAAVRRGELVEVLQQAGYRTRRFSILYPHNRHLSARVRAFVEFLRQA 300 Query: 301 V 301 V Sbjct: 301 V 301 >ref|ZP_08520691.1| LysR family transcription regulator protein [Aeromonas caviae Ae398] Length = 317 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 202/302 (66%), Positives = 243/302 (80%) Query: 2 RNFDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLEARLGVRLFARTTRQI 61 R FDPVQLG+IELFCKAAELGSFTA A+ LG+TPASVSRSI RLEARLGV+LF RTTR + Sbjct: 3 RAFDPVQLGTIELFCKAAELGSFTATAQVLGVTPASVSRSIQRLEARLGVKLFHRTTRSV 62 Query: 62 RLTREGELYHEQCRQALEQIAEAERILTGQQKVPSGPLRISVGTPYAHYRLLPLLPRFQA 121 RLT +GELY EQC+QALEQIAEAER +TG+Q+ P G LRISVGT YAH+RL+PLLP F A Sbjct: 63 RLTHDGELYREQCQQALEQIAEAERAITGRQRHPRGVLRISVGTVYAHHRLVPLLPGFMA 122 Query: 122 AFPQIEVELSIANRVIDFVEEGYDLAIRLGVPQDSRLIAHTLEDATLGVFAAPSYLTRRG 181 A+P++E+EL+++NR IDFVE+GYDLAIRLG P+D R+IA LEDA+LGVF P Y RR Sbjct: 123 AYPEVELELNVSNRNIDFVEDGYDLAIRLGEPRDGRIIARKLEDASLGVFCTPDYAARRP 182 Query: 182 TPDSVEALKQHDCIQFILPSTGRAMPWIFKDGQGRDMDFHFRSRQRIHDDVLGCVNWAIA 241 P S+E L QHD IQFI PSTGR PW F + QG +D H +SRQR+ DDVL + WA+A Sbjct: 183 APTSLEMLSQHDLIQFITPSTGRPFPWQFVNEQGDPVDLHVQSRQRVLDDVLAGLGWAVA 242 Query: 242 GGGLFQIYHFIAQAAVQRGELVEVLQSAGHRTRRFSILYPHNRHLSARVRAFVDFVMQAV 301 GGGLFQIYHF+A A+ +G+L+EV+ R+R F LYP +RHLSARVRAFVD+++ AV Sbjct: 243 GGGLFQIYHFVAAEALLQGKLIEVMTPFAGRSRPFYALYPQHRHLSARVRAFVDYLLAAV 302 Query: 302 RP 303 P Sbjct: 303 HP 304 >ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR89323.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 309 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 180/303 (59%), Positives = 218/303 (71%), Gaps = 3/303 (0%) Query: 2 RNFDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLEARLGVRLFARTTRQI 61 RNFD V LGSIELFC AAE GSFTAAA G+TPA+VSRSISRLEARLGVRLF RTTRQI Sbjct: 3 RNFDDVLLGSIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQI 62 Query: 62 RLTREGELYHEQCRQALEQIAEAERILTGQQKVPSGPLRISVGTPYAHYRLLPLLPRFQA 121 RLT G +Y EQCR+AL Q+ +AER ++G Q P+G LRISV TPY HYRLLPLLP F+ Sbjct: 63 RLTDGGRVYFEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQ 122 Query: 122 AFPQIEVELSIANRVIDFVEEGYDLAIRLGVPQDSRLIAHTLEDATLGVFAAPSYLTRRG 181 +P ++VE+ I+NR IDF EE YDLAIR P DS LIA LE+A L + AAPSYL R G Sbjct: 123 RYPDVQVEVHISNRNIDFAEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAG 182 Query: 182 TPDSVEALKQHDCIQFILPSTGRAMPWIFKDG---QGRDMDFHFRSRQRIHDDVLGCVNW 238 P ++E L++H+CIQF LPSTGR +PW+F QG+ +D +DVLG V Sbjct: 183 KPKTLEDLQKHECIQFELPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVLGIVTL 242 Query: 239 AIAGGGLFQIYHFIAQAAVQRGELVEVLQSAGHRTRRFSILYPHNRHLSARVRAFVDFVM 298 A +G GL Q Y FI + ++ G LVE+L G +R F +LYPH RHLS+RVRAFVDF+M Sbjct: 243 ARSGAGLVQTYRFIVEDDLREGRLVELLPQFGATSRPFILLYPHARHLSSRVRAFVDFLM 302 Query: 299 QAV 301 + + Sbjct: 303 EKL 305 >ref|NP_744650.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gb|AAN68114.1|AE016443_5 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 308 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 177/301 (58%), Positives = 213/301 (70%), Gaps = 1/301 (0%) Query: 2 RNFDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLEARLGVRLFARTTRQI 61 R+FD V LGSIELFC AAELGSFTAAA A G+TPA+VSRSISRLE RLG RLF RTTR I Sbjct: 3 RHFDDVLLGSIELFCLAAELGSFTAAALAAGVTPAAVSRSISRLEERLGSRLFVRTTRSI 62 Query: 62 RLTREGELYHEQCRQALEQIAEAERILTGQQKVPSGPLRISVGTPYAHYRLLPLLPRFQA 121 RLT G Y+EQCRQAL Q+ EAER++TGQQ+ PSG LRIS+ T Y H+R+LPLLP F+ Sbjct: 63 RLTEGGRGYYEQCRQALTQLVEAERVVTGQQQEPSGTLRISLPTTYGHHRILPLLPEFRR 122 Query: 122 AFPQIEVELSIANRVIDFVEEGYDLAIRLGVPQDSRLIAHTLEDATLGVFAAPSYLTRRG 181 +P+++V++ + NR IDFV EGYDLAIR+ DS LIA LEDA L V A P YL G Sbjct: 123 RYPKVQVDIHLGNRNIDFVGEGYDLAIRVRAQPDSTLIARPLEDARLVVVATPDYLEHAG 182 Query: 182 TPDSVEALKQHDCIQFILPSTGRAMPWIFKDGQGRDMDFHFRSRQRIHDDVLGCVNWAIA 241 P S+E L QHDCIQF LPS+GR + W+F D +GR+ + DDVLG V A Sbjct: 183 APQSLEELAQHDCIQFELPSSGRRIAWLF-DEEGREREVLTEGGYVCSDDVLGGVTLAKH 241 Query: 242 GGGLFQIYHFIAQAAVQRGELVEVLQSAGHRTRRFSILYPHNRHLSARVRAFVDFVMQAV 301 G GLFQ Y FI + + G LVEVL+ R+R F++LYP RH+ R+RAFVDF+M Sbjct: 242 GAGLFQTYRFIVERELAEGSLVEVLRPFAGRSRPFTLLYPQGRHMPLRLRAFVDFIMDKR 301 Query: 302 R 302 R Sbjct: 302 R 302 >gb|EGP47482.1| LysR family transcriptional regulator [Achromobacter xylosoxidans AXX-A] Length = 303 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 172/301 (57%), Positives = 220/301 (73%), Gaps = 1/301 (0%) Query: 2 RNFDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLEARLGVRLFARTTRQI 61 R F+ + LGS+ELFC AAEL SFTAAA A G+TPA+VSRS+SRLE RLGVRLF RTTRQI Sbjct: 3 RRFEDLMLGSVELFCLAAELQSFTAAANAAGVTPAAVSRSVSRLEERLGVRLFVRTTRQI 62 Query: 62 RLTREGELYHEQCRQALEQIAEAERILTGQQKVPSGPLRISVGTPYAHYRLLPLLPRFQA 121 RLT G+ Y EQCR AL + EAER +TGQQ P+G LRIS+ TPYAH+R+LPLL F+ Sbjct: 63 RLTAAGQRYMEQCRSALALLNEAEREVTGQQAEPAGKLRISLPTPYAHHRVLPLLGEFRQ 122 Query: 122 AFPQIEVELSIANRVIDFVEEGYDLAIRLGVPQDSRLIAHTLEDATLGVFAAPSYLTRRG 181 +P ++V++ I+NR IDF EEGYDLAIR +P DS L+A LEDA + + AAP YL R G Sbjct: 123 RYPLVQVDVHISNRNIDFAEEGYDLAIRGRLPPDSNLVARKLEDAEMVLVAAPGYLRRAG 182 Query: 182 TPDSVEALKQHDCIQFILPSTGRAMPWIFKDGQGRDMDFHFRSRQRIHDDVLGCVNWAIA 241 TP ++E L++HDCIQF LPSTGR +PWIF GR ++ DVLG V+ A Sbjct: 183 TPRTLEDLREHDCIQFELPSTGRNIPWIFMR-DGRQIELPTSGGTSCSGDVLGGVSLARH 241 Query: 242 GGGLFQIYHFIAQAAVQRGELVEVLQSAGHRTRRFSILYPHNRHLSARVRAFVDFVMQAV 301 G GLFQ Y F+ Q ++RG+L+E++ + G +R F++LYPH RH+S RVR FVDF+++ + Sbjct: 242 GAGLFQTYRFVVQDDLRRGDLMEIMPAFGGASRAFTLLYPHVRHVSLRVRTFVDFLLERL 301 Query: 302 R 302 R Sbjct: 302 R 302