BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2771.p (448 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776022.1| C4-dicarboxylate transport transmembrane pro... 733 0.0 ref|YP_981220.1| C4-dicarboxylate transporter DctA [Polaromonas ... 654 0.0 ref|YP_996611.1| C4-dicarboxylate transporter DctA [Verminephrob... 647 0.0 ref|YP_971830.1| C4-dicarboxylate transporter DctA [Acidovorax c... 643 0.0 ref|YP_004235853.1| sodium:dicarboxylate symporter [Acidovorax a... 642 0.0 >ref|YP_003776022.1| C4-dicarboxylate transport transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64114.1| C4-dicarboxylate transport transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 733 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 434/441 (98%), Positives = 439/441 (99%) Query: 8 MSAQKPPLYKSLYFQVLCAIVIGIALGHFYPSTGEAMKPLGDGFVKLIKMIIAPVIFCTV 67 M+AQKPPLYKSLYFQVL AIVIGI LGHFYPSTGEAMKPLGDGFVKLIKMIIAPVIFCTV Sbjct: 1 MTAQKPPLYKSLYFQVLVAIVIGILLGHFYPSTGEAMKPLGDGFVKLIKMIIAPVIFCTV 60 Query: 68 VIGIAGMEDMKKVGKTGGLALLYFEVVSTVALVIGLLLVNFLQPGVGMNVDPASLDTKSI 127 VIGIAGMEDMKKVGKTGGLALLYFEVVSTVAL+IGLLLVNFLQPGVGMNVDPASLDTKSI Sbjct: 61 VIGIAGMEDMKKVGKTGGLALLYFEVVSTVALIIGLLLVNFLQPGVGMNVDPASLDTKSI 120 Query: 128 AAYTAPGKMGSVTDFVLGIIPTSMVDAFAKGDVLQVLLVAVLFGFALHKFGGRGTLVFDF 187 AAYTAPGKMGSVTDFVLGIIPTSMVDAFAKGDVLQVLLVAVLFGFALHKFGGRGTLVFDF Sbjct: 121 AAYTAPGKMGSVTDFVLGIIPTSMVDAFAKGDVLQVLLVAVLFGFALHKFGGRGTLVFDF 180 Query: 188 IEKISHVLFSVVGAIMKVAPIGAFGAMSFTIGKYGVGSLFSLAKLMGTFYLTCLLFIFVV 247 IEKISHVLFSVVGAIMKVAPIGAFGAMSFTIGKYGVGSLFSLAKLMGTFYLTCLLFIFVV Sbjct: 181 IEKISHVLFSVVGAIMKVAPIGAFGAMSFTIGKYGVGSLFSLAKLMGTFYLTCLLFIFVV 240 Query: 248 LGIITRLHGFSIWKFVKYIKEELLIVLGTSSSESVLPRMLAKMENAGAKKTVVGLVIPTG 307 LGIITRLHGFSIWKFVKYIKEELLIVLGTSSSESVLPRMLAKMENAGAKKTVVGLVIPTG Sbjct: 241 LGIITRLHGFSIWKFVKYIKEELLIVLGTSSSESVLPRMLAKMENAGAKKTVVGLVIPTG 300 Query: 308 YSFNLDGTAIYLTMAAVFIAQATNTPMTFVQELTLLGVLLLTSKGAAGITGSGFIVLAAT 367 YSFNLDGTAIYLTMAAVFIAQATNTPMTFVQELTLLGVLLLTSKGAAGITGSGFIVLAAT Sbjct: 301 YSFNLDGTAIYLTMAAVFIAQATNTPMTFVQELTLLGVLLLTSKGAAGITGSGFIVLAAT 360 Query: 368 LSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSGELDSERLTKVLNNE 427 LSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSGELDSERLTKVLNNE Sbjct: 361 LSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSGELDSERLTKVLNNE 420 Query: 428 TVEDAQAPEAVLDRTEAKMHH 448 TVEDAQAPE++LDRT+AKMHH Sbjct: 421 TVEDAQAPESILDRTDAKMHH 441 >ref|YP_981220.1| C4-dicarboxylate transporter DctA [Polaromonas naphthalenivorans CJ2] sp|A1VKX1|DCTA1_POLNA RecName: Full=C4-dicarboxylate transport protein 1 gb|ABM36299.1| sodium:dicarboxylate symporter [Polaromonas naphthalenivorans CJ2] Length = 452 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 359/441 (81%), Positives = 399/441 (90%) Query: 6 STMSAQKPPLYKSLYFQVLCAIVIGIALGHFYPSTGEAMKPLGDGFVKLIKMIIAPVIFC 65 ++ +K PLY+SLYFQV+CA++ G+ALG+FYPS GE+MKPLGDGF+KLIKM+IAP+IFC Sbjct: 3 TSAPTEKLPLYRSLYFQVVCAVIAGVALGYFYPSVGESMKPLGDGFIKLIKMMIAPIIFC 62 Query: 66 TVVIGIAGMEDMKKVGKTGGLALLYFEVVSTVALVIGLLLVNFLQPGVGMNVDPASLDTK 125 TVV+GIAGMEDMKKVGKTGGLALLYFEVVST AL+IGLLLVN QPG GMN+D A+LDTK Sbjct: 63 TVVVGIAGMEDMKKVGKTGGLALLYFEVVSTFALIIGLLLVNLFQPGAGMNIDAATLDTK 122 Query: 126 SIAAYTAPGKMGSVTDFVLGIIPTSMVDAFAKGDVLQVLLVAVLFGFALHKFGGRGTLVF 185 SIAAYT PGKM S TDF+L +IPT+ VDAFAKG++LQVLL+A+LFGFALH+FGGRGTLVF Sbjct: 123 SIAAYTGPGKMVSTTDFILNVIPTAFVDAFAKGEILQVLLLAILFGFALHRFGGRGTLVF 182 Query: 186 DFIEKISHVLFSVVGAIMKVAPIGAFGAMSFTIGKYGVGSLFSLAKLMGTFYLTCLLFIF 245 D IEK SHVLF++VG IMKVAPIGAFGAM+FTIGKYGVGSLFSL KLMG FYLTCL+FIF Sbjct: 183 DMIEKSSHVLFTIVGFIMKVAPIGAFGAMAFTIGKYGVGSLFSLGKLMGAFYLTCLIFIF 242 Query: 246 VVLGIITRLHGFSIWKFVKYIKEELLIVLGTSSSESVLPRMLAKMENAGAKKTVVGLVIP 305 VLG I R+HGFS+WKF+KYIKEELLIVLGTSSSESVLPRM+ KMEN GAKKT VGLVIP Sbjct: 243 GVLGAIARIHGFSVWKFIKYIKEELLIVLGTSSSESVLPRMMEKMENLGAKKTTVGLVIP 302 Query: 306 TGYSFNLDGTAIYLTMAAVFIAQATNTPMTFVQELTLLGVLLLTSKGAAGITGSGFIVLA 365 TGYSFNLDGT+IYLTMAAVFIAQATNTPMT +QE+TLLGVLLLTSKGAAG+TGSGFIVLA Sbjct: 303 TGYSFNLDGTSIYLTMAAVFIAQATNTPMTLMQEITLLGVLLLTSKGAAGVTGSGFIVLA 362 Query: 366 ATLSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSGELDSERLTKVLN 425 ATLSAVG VPVAGLALILGIDRFMSEARALTN IGNGVATLVVAKW+ ELD ERL LN Sbjct: 363 ATLSAVGTVPVAGLALILGIDRFMSEARALTNLIGNGVATLVVAKWTNELDMERLQAGLN 422 Query: 426 NETVEDAQAPEAVLDRTEAKM 446 NET E+AQ PE VLD+ M Sbjct: 423 NETWEEAQEPERVLDKKTEHM 443 >ref|YP_996611.1| C4-dicarboxylate transporter DctA [Verminephrobacter eiseniae EF01-2] sp|A1WIY6|DCTA_VEREI RecName: Full=C4-dicarboxylate transport protein gb|ABM57593.1| sodium:dicarboxylate symporter [Verminephrobacter eiseniae EF01-2] Length = 439 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 358/437 (81%), Positives = 400/437 (91%) Query: 12 KPPLYKSLYFQVLCAIVIGIALGHFYPSTGEAMKPLGDGFVKLIKMIIAPVIFCTVVIGI 71 K PL+KSLY QVL AIVIG+ LGHFYP +GEAMKPLGDGF+KLIKMIIAPVIFCTVV+GI Sbjct: 3 KAPLHKSLYVQVLAAIVIGVVLGHFYPPSGEAMKPLGDGFIKLIKMIIAPVIFCTVVLGI 62 Query: 72 AGMEDMKKVGKTGGLALLYFEVVSTVALVIGLLLVNFLQPGVGMNVDPASLDTKSIAAYT 131 AGMEDMKKVGKTGGLALLYFE+VST+AL++GL+LVN LQPG GMN+DP ++DTK+I AYT Sbjct: 63 AGMEDMKKVGKTGGLALLYFEIVSTLALIVGLVLVNVLQPGAGMNIDPRTIDTKAITAYT 122 Query: 132 APGKMGSVTDFVLGIIPTSMVDAFAKGDVLQVLLVAVLFGFALHKFGGRGTLVFDFIEKI 191 PGKM +F+L IIP SMVDAFAKGD+LQVLL++VLFGFALH+FGGRGT+VFDFIEK+ Sbjct: 123 GPGKMTGTVEFLLNIIPVSMVDAFAKGDILQVLLISVLFGFALHRFGGRGTMVFDFIEKV 182 Query: 192 SHVLFSVVGAIMKVAPIGAFGAMSFTIGKYGVGSLFSLAKLMGTFYLTCLLFIFVVLGII 251 S VLF++VG IMK APIGAFGAM+FTIGKYG+GSL SL KLMGTFYLTCL FIF VLG I Sbjct: 183 SQVLFAIVGTIMKAAPIGAFGAMAFTIGKYGIGSLLSLGKLMGTFYLTCLFFIFAVLGTI 242 Query: 252 TRLHGFSIWKFVKYIKEELLIVLGTSSSESVLPRMLAKMENAGAKKTVVGLVIPTGYSFN 311 TRLHGFS+WKFVKYIKEELLIVLGTSSSESVLPRML+KMEN GAKKTVVGLVIPTGYSFN Sbjct: 243 TRLHGFSVWKFVKYIKEELLIVLGTSSSESVLPRMLSKMENLGAKKTVVGLVIPTGYSFN 302 Query: 312 LDGTAIYLTMAAVFIAQATNTPMTFVQELTLLGVLLLTSKGAAGITGSGFIVLAATLSAV 371 LDGTAIYLTMAAVFIAQATNTPMT +QE+TLL VLLLTSKGAAGITGSGFIVLAA+LSAV Sbjct: 303 LDGTAIYLTMAAVFIAQATNTPMTLMQEVTLLAVLLLTSKGAAGITGSGFIVLAASLSAV 362 Query: 372 GHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSGELDSERLTKVLNNETVED 431 GH+PVAGLALILGIDRFMSEARALTNTIGNGVA++VVAKWS ELD +RL LN +T E+ Sbjct: 363 GHLPVAGLALILGIDRFMSEARALTNTIGNGVASIVVAKWSKELDEQRLHAQLNGQTAEE 422 Query: 432 AQAPEAVLDRTEAKMHH 448 A AP+A+ DR E+++HH Sbjct: 423 ASAPQALPDRMESRIHH 439 >ref|YP_971830.1| C4-dicarboxylate transporter DctA [Acidovorax citrulli AAC00-1] sp|A1TSW8|DCTA_ACIAC RecName: Full=C4-dicarboxylate transport protein gb|ABM34056.1| sodium:dicarboxylate symporter [Acidovorax citrulli AAC00-1] Length = 451 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 351/439 (79%), Positives = 399/439 (90%) Query: 8 MSAQKPPLYKSLYFQVLCAIVIGIALGHFYPSTGEAMKPLGDGFVKLIKMIIAPVIFCTV 67 + A+K PLY+SLY QVL A+V+G+ LGHFYP GE MKPLGDGF+KLIKMIIAP+IFCTV Sbjct: 7 IPARKLPLYRSLYVQVLFAVVVGVLLGHFYPEIGEKMKPLGDGFIKLIKMIIAPIIFCTV 66 Query: 68 VIGIAGMEDMKKVGKTGGLALLYFEVVSTVALVIGLLLVNFLQPGVGMNVDPASLDTKSI 127 V+GIAGMEDMKKVG+TGGLALLYFE+VS+VALVIGL++VN LQPG GMNVD +++DTKSI Sbjct: 67 VVGIAGMEDMKKVGRTGGLALLYFEIVSSVALVIGLIVVNVLQPGAGMNVDASAIDTKSI 126 Query: 128 AAYTAPGKMGSVTDFVLGIIPTSMVDAFAKGDVLQVLLVAVLFGFALHKFGGRGTLVFDF 187 AAYTAPGKMG+ TDF++ IIPT++VDAFAKG++LQVLL+AV+FGFALH+FGGRGTLVFDF Sbjct: 127 AAYTAPGKMGTTTDFLMNIIPTTVVDAFAKGEILQVLLIAVMFGFALHRFGGRGTLVFDF 186 Query: 188 IEKISHVLFSVVGAIMKVAPIGAFGAMSFTIGKYGVGSLFSLAKLMGTFYLTCLLFIFVV 247 IEK SHVLF++VG IMKVAPIGAFGAMSFTIGKYGVGSL SL KLMG+FYLTCLLF+FVV Sbjct: 187 IEKTSHVLFTIVGYIMKVAPIGAFGAMSFTIGKYGVGSLLSLGKLMGSFYLTCLLFVFVV 246 Query: 248 LGIITRLHGFSIWKFVKYIKEELLIVLGTSSSESVLPRMLAKMENAGAKKTVVGLVIPTG 307 LG+I R HGFSIWKFVKYIKEELLIVLGTSSSESVLPRM+ KMEN GA+KT VGLVIPTG Sbjct: 247 LGLIARFHGFSIWKFVKYIKEELLIVLGTSSSESVLPRMMEKMENLGARKTTVGLVIPTG 306 Query: 308 YSFNLDGTAIYLTMAAVFIAQATNTPMTFVQELTLLGVLLLTSKGAAGITGSGFIVLAAT 367 YSFNLDGT+IYLTMAAVFIAQATNTP+ ++TLL VLLLTSKGAAGITGSGFIVLAAT Sbjct: 307 YSFNLDGTSIYLTMAAVFIAQATNTPLDITHQITLLLVLLLTSKGAAGITGSGFIVLAAT 366 Query: 368 LSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSGELDSERLTKVLNNE 427 LSAVGHVPVAGLALILGIDRFMSEARALTN +GNGVAT+VVAKW+G+LD+E+L + L+N Sbjct: 367 LSAVGHVPVAGLALILGIDRFMSEARALTNLVGNGVATIVVAKWTGDLDTEQLKQRLDNP 426 Query: 428 TVEDAQAPEAVLDRTEAKM 446 AQ PEA+LD +M Sbjct: 427 DWVAAQEPEAILDHKTERM 445 >ref|YP_004235853.1| sodium:dicarboxylate symporter [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47286.1| sodium:dicarboxylate symporter [Acidovorax avenae subsp. avenae ATCC 19860] Length = 451 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 351/443 (79%), Positives = 399/443 (90%) Query: 4 GESTMSAQKPPLYKSLYFQVLCAIVIGIALGHFYPSTGEAMKPLGDGFVKLIKMIIAPVI 63 + + A+K PLY+SLY QVL A+V+G+ LGHFYP GE MKPLGDGF+KLIKMIIAP+I Sbjct: 3 AHARIPARKLPLYRSLYVQVLFAVVVGVLLGHFYPEIGEKMKPLGDGFIKLIKMIIAPII 62 Query: 64 FCTVVIGIAGMEDMKKVGKTGGLALLYFEVVSTVALVIGLLLVNFLQPGVGMNVDPASLD 123 FCTVV+GIAGMEDMKKVG+TGGLALLYFE+VS++ALVIGL++VN LQPG GMNVD +++D Sbjct: 63 FCTVVVGIAGMEDMKKVGRTGGLALLYFEIVSSIALVIGLIVVNVLQPGAGMNVDASAID 122 Query: 124 TKSIAAYTAPGKMGSVTDFVLGIIPTSMVDAFAKGDVLQVLLVAVLFGFALHKFGGRGTL 183 TKSIAAYTAPGKMG+ TDF++ IIPT++VDAFAKG++LQVLL+AV+FGFALH+FGGRGTL Sbjct: 123 TKSIAAYTAPGKMGTTTDFLMNIIPTTVVDAFAKGEILQVLLIAVMFGFALHRFGGRGTL 182 Query: 184 VFDFIEKISHVLFSVVGAIMKVAPIGAFGAMSFTIGKYGVGSLFSLAKLMGTFYLTCLLF 243 VFDFIEK SHVLF++VG IMKVAPIGAFGAMSFTIGKYGVGSL SL KLMG+FYLTCLLF Sbjct: 183 VFDFIEKTSHVLFTIVGYIMKVAPIGAFGAMSFTIGKYGVGSLLSLGKLMGSFYLTCLLF 242 Query: 244 IFVVLGIITRLHGFSIWKFVKYIKEELLIVLGTSSSESVLPRMLAKMENAGAKKTVVGLV 303 +FVVLG+I R HGFSIWKFVKYIKEELLIVLGTSSSESVLPRM+ KMEN GAKKT VGLV Sbjct: 243 VFVVLGLIARFHGFSIWKFVKYIKEELLIVLGTSSSESVLPRMMEKMENLGAKKTTVGLV 302 Query: 304 IPTGYSFNLDGTAIYLTMAAVFIAQATNTPMTFVQELTLLGVLLLTSKGAAGITGSGFIV 363 IPTGYSFNLDGT+IYLTMAAVFIAQATNTP+ ++TLL VLLLTSKGAAGITGSGFIV Sbjct: 303 IPTGYSFNLDGTSIYLTMAAVFIAQATNTPLDITHQITLLLVLLLTSKGAAGITGSGFIV 362 Query: 364 LAATLSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSGELDSERLTKV 423 LAATLSAVGHVPVAGLALILGIDRFMSEARALTN +GNGVAT+VVAKW+G+LD+E+L + Sbjct: 363 LAATLSAVGHVPVAGLALILGIDRFMSEARALTNLVGNGVATIVVAKWTGDLDTEQLRQR 422 Query: 424 LNNETVEDAQAPEAVLDRTEAKM 446 L+N AQ PEA+LD M Sbjct: 423 LDNPDWVAAQEPEAILDHKTEHM 445