BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2770.p (496 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776023.1| methyl-accepting chemotaxis II protein [Herb... 535 e-150 ref|YP_002354973.1| methyl-accepting chemotaxis sensory transduc... 232 9e-59 ref|ZP_03698251.1| methyl-accepting chemotaxis sensory transduce... 231 2e-58 ref|YP_004382315.1| chemotaxis sensory transducer [Pseudomonas m... 230 4e-58 ref|YP_004846748.1| methyl-accepting chemotaxis sensory transduc... 230 4e-58 >ref|YP_003776023.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] gb|ADJ64115.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 357/491 (72%), Positives = 413/491 (84%), Gaps = 3/491 (0%) Query: 1 MASSNDKLRYVYEDRTMALIHIARVRDALYLNRDVMGRALMMANLPA-PAIDDSNGTSSD 59 MASSNDKL+YVYEDRTMALIHIARVRDALY NRD+MGRALMMANL P DDS S+ Sbjct: 47 MASSNDKLKYVYEDRTMALIHIARVRDALYQNRDLMGRALMMANLRTDPNADDS--VSAA 104 Query: 60 RIKPLLERIPALDATFEQGWQAYRATRLEPQEQTEAERFEQSWRRYVAERAVVLDLLRSN 119 RIK L + ALDA+F +GW+AYR TRL P+E T A RFE+ W+ Y++ER ++ L+ + Sbjct: 105 RIKQNLGGMAALDASFREGWKAYRDTRLSPEETTLAGRFEERWQTYLSERDQIITLIANG 164 Query: 120 EPLQANRRWTPLTSELAGLATQLAALGQLQESFTRTSYEAALEDYRQLRTHNLQIAGLAL 179 EPLQANRRWT LT++LA LA L+ LG+LQES T ++YE A +Y++LRTHNL+IAGL L Sbjct: 165 EPLQANRRWTALTTQLADLAGLLSKLGRLQESLTGSAYEEARNEYQRLRTHNLEIAGLTL 224 Query: 180 AIGVAIALWIMISLRRQLGGEPDYAAHIVHQIAEGNLGVAVTLRRRDRSSLLYAMQGMRE 239 A+G+A+ALWI+ +RR+LGGEP YAA IV QIA+GNL V V LR DRSSLLYAM MR Sbjct: 225 ALGLALALWIIAGVRRELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMHTMRA 284 Query: 240 RLTDILRGVTLLTQALGDSARQLNATAQDLASASNEQAAAVEEVHSAISNISLAIQQTGE 299 RLT+I+R VTL TQALG S+RQLNATA LA AS+EQAAAVEEVH AI++++ AIQQTGE Sbjct: 285 RLTEIMRNVTLSTQALGVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQAIQQTGE 344 Query: 300 HARRTDQIALNAAADADQSGAAVQSTVAAMRGIARQVGVIDDIAYQTNLLALNAAIEAAR 359 HARRT+QIA+ AA+DAD+SGAAVQ+TV AMRGIARQVGVIDDIAYQTNLLALNAAIEAAR Sbjct: 345 HARRTNQIAVAAASDADKSGAAVQTTVDAMRGIARQVGVIDDIAYQTNLLALNAAIEAAR 404 Query: 360 AGEHGRGFSVVAAEIRKLAERSQGSAQEISVIAEQSVELAEATSQRLAAGTLNGIREASQ 419 AGEHGRGFSVVAAE+RKLAERSQ SA EISVIA+QSVELAE TSQRL GTL GIR+ASQ Sbjct: 405 AGEHGRGFSVVAAEVRKLAERSQSSAHEISVIAQQSVELAEQTSQRLVEGTLQGIRQASQ 464 Query: 420 QINKITLSARLQEEGVQEIGSAVMQLNDTTQRNAAASEELATTAELVAERARELTAQLCY 479 QIN+ITLS+R+QEEGV EIG AV QLNDTTQRNAAASEELA TAE +AERAREL AQL Y Sbjct: 465 QINQITLSSRMQEEGVAEIGVAVTQLNDTTQRNAAASEELAITAEAMAERARELNAQLAY 524 Query: 480 FRLDESRPAMP 490 FRL++S+ P Sbjct: 525 FRLEQSQQGQP 535 >ref|YP_002354973.1| methyl-accepting chemotaxis sensory transducer [Thauera sp. MZ1T] gb|ACK54077.1| methyl-accepting chemotaxis sensory transducer [Thauera sp. MZ1T] Length = 555 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 157/310 (50%), Positives = 214/310 (69%), Gaps = 1/310 (0%) Query: 174 IAGLALAIGVAIALWIMISLRRQLGGEPDYAAHIVHQIAEGNLGVAVTLRRRDRSSLLYA 233 + G+AL +GVA+A+ I L RQLGGEPDYAA I ++A G+L V V LR D +S+L A Sbjct: 194 LGGIALLVGVAVAILITRGLLRQLGGEPDYAAEIARKVAAGDLTVDVQLRAGDSASVLAA 253 Query: 234 MQGMRERLTDILRGVTLLTQALGDSARQLNATAQDLASASNEQAAAVEEVHSAISNISLA 293 MQ M L+ L V AL ++ Q++AT+Q LA S+EQAA++EE ++I +S + Sbjct: 254 MQRMVGSLSHTLGEVRGAADALSAASEQVSATSQSLAQGSSEQAASLEETSASIEQMSAS 313 Query: 294 IQQTGEHARRTDQIALNAAADADQSGAAVQSTVAAMRGIARQVGVIDDIAYQTNLLALNA 353 I Q E+AR TD +A +AADA + G AV++TV AMR IA ++G++DDIAYQTNLLALNA Sbjct: 314 IGQNTENARVTDGMASKSAADAGEGGDAVRATVEAMRSIADKIGIVDDIAYQTNLLALNA 373 Query: 354 AIEAARAGEHGRGFSVVAAEIRKLAERSQGSAQEISVIAEQSVELAEATSQRLAAGTLNG 413 AIEAARAGEHG+GF+VVAAE+RKLAERSQ +AQEI +A SV+ AE L + Sbjct: 374 AIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQEIGELAGSSVKTAERAGALLEQ-IVPS 432 Query: 414 IREASQQINKITLSARLQEEGVQEIGSAVMQLNDTTQRNAAASEELATTAELVAERAREL 473 IR+ ++ + +IT S+ Q G +I A+ Q++ TTQ+NA+ASEEL+ TAE + +A +L Sbjct: 433 IRKTAELVQEITASSEEQSAGAGQINIAMSQISQTTQQNASASEELSATAEEMNSQAEQL 492 Query: 474 TAQLCYFRLD 483 + FRLD Sbjct: 493 QRLVAQFRLD 502 >ref|ZP_03698251.1| methyl-accepting chemotaxis sensory transducer [Lutiella nitroferrum 2002] gb|EEG08993.1| methyl-accepting chemotaxis sensory transducer [Lutiella nitroferrum 2002] Length = 546 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 162/345 (46%), Positives = 222/345 (64%), Gaps = 1/345 (0%) Query: 147 QLQESFTRTSYEAALEDYRQLRTHNLQIAGLALAIGVAIALWIMISLRRQLGGEPDYAAH 206 Q Q +S + A Y + R L + + I A+ WI +L RQLGGEPD+AA Sbjct: 167 QFQGELMDSSAKDAQAVYAEARNLTLALIAAGIVIAAAVGFWITRNLMRQLGGEPDHAAA 226 Query: 207 IVHQIAEGNLGVAVTLRRRDRSSLLYAMQGMRERLTDILRGVTLLTQALGDSARQLNATA 266 I ++AEG+L + LR D SSLL AM+ M ERL+ + V L +A Q++AT+ Sbjct: 227 IARKVAEGDLTQQIELRANDNSSLLAAMRNMVERLSLTIGQVRSAADNLSAAAEQVSATS 286 Query: 267 QDLASASNEQAAAVEEVHSAISNISLAIQQTGEHARRTDQIALNAAADADQSGAAVQSTV 326 Q L+ + EQAA+VEE+ S + + + Q E+AR TD +A AA++A Q GAAV+ TV Sbjct: 287 QSLSQGAAEQAASVEEISSTLEQTTATVAQNTENARVTDGMAAKAASEAGQGGAAVKETV 346 Query: 327 AAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQGSAQ 386 AMR IA+++G+IDDIAYQTNLLALNAAIEAARAGEHG+GF+VVAAE+RKLAERSQ +AQ Sbjct: 347 TAMRAIAQKIGIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQ 406 Query: 387 EISVIAEQSVELAEATSQRLAAGTLNGIREASQQINKITLSARLQEEGVQEIGSAVMQLN 446 EI +A SV+LAE Q L A + I + S + +I +++ Q GV +I AV QLN Sbjct: 407 EIGELAGSSVKLAEHAGQLLDA-MVPSISKTSDLVQEIASASQEQSAGVTQINQAVGQLN 465 Query: 447 DTTQRNAAASEELATTAELVAERARELTAQLCYFRLDESRPAMPP 491 TTQ++A++SEELA TAE + +A +L + +FR + + P Sbjct: 466 QTTQQSASSSEELAATAEEMGAQAEQLQGLMAFFRTESTARQRSP 510 >ref|YP_004382315.1| chemotaxis sensory transducer [Pseudomonas mendocina NK-01] gb|AEB60563.1| chemotaxis sensory transducer [Pseudomonas mendocina NK-01] Length = 547 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 160/354 (45%), Positives = 233/354 (65%), Gaps = 4/354 (1%) Query: 130 PLTSELAGLATQLAALGQLQESFTRTSYEAALEDYRQLRTHNLQIAGLALAIGVAIALWI 189 P +EL +T AL Q S + + + R + I G+A I V +A I Sbjct: 151 PANNELLKAST---ALADFQAELMEQSQNESTALFEESRMQLMIIGGVAALISVLLAWLI 207 Query: 190 MISLRRQLGGEPDYAAHIVHQIAEGNLGVAVTLRRRDRSSLLYAMQGMRERLTDILRGVT 249 SL RQLGGEP YAA +V +IAEG+L V VT R D +S+L A++ M +RL+ I+ V Sbjct: 208 THSLLRQLGGEPGYAAEVVTRIAEGDLRVEVTTRNGDTTSMLAAIKSMSQRLSQIISEVR 267 Query: 250 LLTQALGDSARQLNATAQDLASASNEQAAAVEEVHSAISNISLAIQQTGEHARRTDQIAL 309 AL ++ +++ATAQ ++ A++EQAA+VEE +++ +S +I Q E+AR TD +A Sbjct: 268 SSADALTSASEEISATAQSMSQAASEQAASVEETSASMEQMSASISQNTENARITDGMAS 327 Query: 310 NAAADADQSGAAVQSTVAAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSV 369 A+ +A + G AV+ TV AM+ IA ++G++DDIAYQTNLLALNAAIEAARAGEHG+GF+V Sbjct: 328 KASGEAGEGGQAVKETVRAMKTIADKIGIVDDIAYQTNLLALNAAIEAARAGEHGKGFAV 387 Query: 370 VAAEIRKLAERSQGSAQEISVIAEQSVELAEATSQRLAAGTLNGIREASQQINKITLSAR 429 VAAE+RKLAERSQ +AQEI +A+ SV+LAE L + I + S + +I+ ++ Sbjct: 388 VAAEVRKLAERSQVAAQEIGEVAKSSVQLAERAGTLLDE-IVPSIAKTSDLVQEISAASE 446 Query: 430 LQEEGVQEIGSAVMQLNDTTQRNAAASEELATTAELVAERARELTAQLCYFRLD 483 Q GV +I +A+ QLN+ TQ+NA++SEELA TAE ++ +A +L + +F+L+ Sbjct: 447 EQSSGVGQISTAMNQLNEITQQNASSSEELAATAEEMSGQAEQLQQLMDFFKLN 500 >ref|YP_004846748.1| methyl-accepting chemotaxis sensory transducer [Pseudogulbenkiania sp. NH8B] dbj|BAK76334.1| methyl-accepting chemotaxis sensory transducer [Pseudogulbenkiania sp. NH8B] Length = 546 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 161/345 (46%), Positives = 222/345 (64%), Gaps = 1/345 (0%) Query: 147 QLQESFTRTSYEAALEDYRQLRTHNLQIAGLALAIGVAIALWIMISLRRQLGGEPDYAAH 206 Q Q ++ + A Y + R L + + I A+ WI +L RQLGGEPD+AA Sbjct: 167 QFQGELMDSAAKDAQAVYAEARNLTLALIAAGIVIAAAVGFWITRNLMRQLGGEPDHAAA 226 Query: 207 IVHQIAEGNLGVAVTLRRRDRSSLLYAMQGMRERLTDILRGVTLLTQALGDSARQLNATA 266 I ++AEG+L + LR D SSLL AM+ M ERL+ + V L +A Q++AT+ Sbjct: 227 IARKVAEGDLTQQIELRANDNSSLLAAMRNMVERLSLTIGQVRSAADNLSAAAEQVSATS 286 Query: 267 QDLASASNEQAAAVEEVHSAISNISLAIQQTGEHARRTDQIALNAAADADQSGAAVQSTV 326 Q L+ + EQAA+VEE+ S + + + Q E+AR TD +A AA++A Q GAAV+ TV Sbjct: 287 QSLSQGAAEQAASVEEISSTLEQTTATVAQNTENARVTDGMAAKAASEAGQGGAAVKETV 346 Query: 327 AAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQGSAQ 386 AMR IA+++G+IDDIAYQTNLLALNAAIEAARAGEHG+GF+VVAAE+RKLAERSQ +AQ Sbjct: 347 TAMRAIAQKIGIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQ 406 Query: 387 EISVIAEQSVELAEATSQRLAAGTLNGIREASQQINKITLSARLQEEGVQEIGSAVMQLN 446 EI +A SV+LAE Q L A + I + S + +I +++ Q GV +I AV QLN Sbjct: 407 EIGELAGSSVKLAEHAGQLLDA-MVPSISKTSDLVQEIASASQEQSAGVTQINQAVGQLN 465 Query: 447 DTTQRNAAASEELATTAELVAERARELTAQLCYFRLDESRPAMPP 491 TTQ++A++SEELA TAE + +A +L + +FR + + P Sbjct: 466 QTTQQSASSSEELAATAEEMGAQAEQLQGLMAFFRTESTARQRSP 510