BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2766.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776027.1| LysR family transcription regulator protein ... 491 e-137 ref|YP_004489583.1| LysR family transcriptional regulator [Delft... 311 5e-83 ref|YP_001563430.1| MarR family transcriptional regulator [Delft... 308 5e-82 ref|YP_001669482.1| LysR family transcriptional regulator [Pseud... 305 5e-81 ref|YP_373307.1| LysR family transcriptional regulator [Burkhold... 301 7e-80 >ref|YP_003776027.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64119.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 286 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 266/286 (93%), Positives = 280/286 (97%) Query: 1 MTPSQLRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSET 60 MTPSQLRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSET Sbjct: 1 MTPSQLRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSET 60 Query: 61 AQRLLPIAQNIAELELDALNLLVNSGALHVGHLRIGAVGPFHVIEMVDAYRARYPKVELS 120 AQRLLPIAQNIAELELDALNLLVNSGALHVGHLRIGAVGPFHVIEMVDAYRARYP+VELS Sbjct: 61 AQRLLPIAQNIAELELDALNLLVNSGALHVGHLRIGAVGPFHVIEMVDAYRARYPRVELS 120 Query: 121 IKLGNSAQSLADLANYVTDVAVLASFNDDARFHSVPYADHAVVLFAHRSHPFYQREAVSL 180 I+LGNSAQ+LADL NYVTDVAVLASF DDARFH++PYADHAVVLFAHRSHPFYQR++V+L Sbjct: 121 IRLGNSAQTLADLENYVTDVAVLASFTDDARFHALPYADHAVVLFAHRSHPFYQRDSVTL 180 Query: 181 AELDQQPLIMREQGSTTRLALEQALQQAGAQPQVVMEIGSREALREAVARGLGLGAVSEA 240 AELDQQP++MREQGSTTRLALE+ALQQAG + QVVMEIGSREALREAVARGLGLGAVSEA Sbjct: 181 AELDQQPMLMREQGSTTRLALEKALQQAGVKVQVVMEIGSREALREAVARGLGLGAVSEA 240 Query: 241 EFIPDERFRMVRIAGDPVSTHTYVYCLAERREGRLVGSFMKIAQRA 286 EF+PDERFRMVRI GDPVSTHTYVYCLAERREGRLVGSFMKIA R+ Sbjct: 241 EFVPDERFRMVRIEGDPVSTHTYVYCLAERREGRLVGSFMKIAARS 286 >ref|YP_004489583.1| LysR family transcriptional regulator [Delftia sp. Cs1-4] gb|AEF91228.1| transcriptional regulator, LysR family [Delftia sp. Cs1-4] Length = 283 Score = 311 bits (798), Expect = 5e-83, Method: Composition-based stats. Identities = 175/281 (62%), Positives = 213/281 (75%) Query: 1 MTPSQLRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSET 60 M+ ++ RAF+AVA H SAAARALGVSQPT++TQ+ +LER+ +ELF RRG R+ L+ Sbjct: 1 MSNARYRAFIAVAHHGSLSAAARALGVSQPTISTQIATLERQSQIELFHRRGYRMTLTGA 60 Query: 61 AQRLLPIAQNIAELELDALNLLVNSGALHVGHLRIGAVGPFHVIEMVDAYRARYPKVELS 120 RLLP+AQ I LE +A L +SG LH G L+IGAVGPFHVIEMV AYRAR+P ++LS Sbjct: 61 GARLLPMAQKIMALEAEAEFFLRDSGQLHQGELKIGAVGPFHVIEMVAAYRARHPGMQLS 120 Query: 121 IKLGNSAQSLADLANYVTDVAVLASFNDDARFHSVPYADHAVVLFAHRSHPFYQREAVSL 180 I++GNS Q LADL Y TDVAVLA D + YA HA+VLFAH +HPF +R ++L Sbjct: 121 IRMGNSQQVLADLERYDTDVAVLAGLYDRPELLAREYARHAIVLFAHVAHPFARRSEIAL 180 Query: 181 AELDQQPLIMREQGSTTRLALEQALQQAGAQPQVVMEIGSREALREAVARGLGLGAVSEA 240 +EL QPL++RE GSTTR ALE LQ AG QP+ +EIGSREA+REAVARGLGLGAVSEA Sbjct: 181 SELQGQPLLLREHGSTTRTALESVLQAAGVQPRTELEIGSREAIREAVARGLGLGAVSEA 240 Query: 241 EFIPDERFRMVRIAGDPVSTHTYVYCLAERREGRLVGSFMK 281 EFIPD RFR +RIAGDP ST TYVYC+ ER + LV SF++ Sbjct: 241 EFIPDPRFRPLRIAGDPASTTTYVYCMRERSDSLLVRSFLE 281 >ref|YP_001563430.1| MarR family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX35045.1| transcriptional regulator, MarR family [Delftia acidovorans SPH-1] Length = 283 Score = 308 bits (790), Expect = 5e-82, Method: Composition-based stats. Identities = 174/281 (61%), Positives = 212/281 (75%) Query: 1 MTPSQLRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSET 60 M+ ++ RAF+AVA H SAAARALGVSQPT++TQ+ +LER+ +ELF RRG R+ L+ Sbjct: 1 MSNARYRAFIAVAHHGSLSAAARALGVSQPTISTQIATLERQSQIELFHRRGYRMTLTGA 60 Query: 61 AQRLLPIAQNIAELELDALNLLVNSGALHVGHLRIGAVGPFHVIEMVDAYRARYPKVELS 120 RLL +AQ I LE +A L +SG LH G L+IGAVGPFHVIEMV AYRAR+P ++LS Sbjct: 61 GARLLSMAQKIMALEAEAEFFLRDSGQLHQGELKIGAVGPFHVIEMVAAYRARHPGMQLS 120 Query: 121 IKLGNSAQSLADLANYVTDVAVLASFNDDARFHSVPYADHAVVLFAHRSHPFYQREAVSL 180 I++GNS Q LADL Y TDVAVLA D + YA HA+VLFAH +HPF +R ++L Sbjct: 121 IRMGNSQQVLADLERYDTDVAVLAGLYDRPELLAREYARHAIVLFAHVAHPFARRSEIAL 180 Query: 181 AELDQQPLIMREQGSTTRLALEQALQQAGAQPQVVMEIGSREALREAVARGLGLGAVSEA 240 +EL QPL++RE GSTTR ALE LQ AG QP+ +EIGSREA+REAVARGLGLGAVSEA Sbjct: 181 SELQGQPLLLREHGSTTRTALESVLQAAGVQPRTELEIGSREAIREAVARGLGLGAVSEA 240 Query: 241 EFIPDERFRMVRIAGDPVSTHTYVYCLAERREGRLVGSFMK 281 EFIPD RFR +RIAGDP ST TYVYC+ ER + LV SF++ Sbjct: 241 EFIPDPRFRPLRIAGDPASTTTYVYCMRERSDSLLVRSFLE 281 >ref|YP_001669482.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gb|ABY99146.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 288 Score = 305 bits (781), Expect = 5e-81, Method: Composition-based stats. Identities = 168/284 (59%), Positives = 211/284 (74%) Query: 1 MTPSQLRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSET 60 M+ ++LR FLAVARH FSA ARA+G+SQPT T QVQ LERE NVELF RRGRR++L+ Sbjct: 1 MSTARLRTFLAVARHASFSAGARAIGLSQPTATNQVQGLEREFNVELFHRRGRRIELTAV 60 Query: 61 AQRLLPIAQNIAELELDALNLLVNSGALHVGHLRIGAVGPFHVIEMVDAYRARYPKVELS 120 + LLPIAQ + LE +A +LL +SG L+ G L+IGAVGPFHVIEMVD YR YP++++S Sbjct: 61 GRALLPIAQRMWMLEAEATSLLRDSGQLNRGELKIGAVGPFHVIEMVDRYRQAYPQIDVS 120 Query: 121 IKLGNSAQSLADLANYVTDVAVLASFNDDARFHSVPYADHAVVLFAHRSHPFYQREAVSL 180 I++GNSA LADL YVTD+ VLA +DD F + YA HAV+LF HPF + + V L Sbjct: 121 IRVGNSASVLADLQGYVTDIGVLAGLHDDPAFVAQRYARHAVILFVRADHPFARHDQVLL 180 Query: 181 AELDQQPLIMREQGSTTRLALEQALQQAGAQPQVVMEIGSREALREAVARGLGLGAVSEA 240 L QPL+ REQGSTTRLAL+ AL A P++VMEIGSREALREAV RG+G+GAVSEA Sbjct: 181 QALQGQPLLRREQGSTTRLALDNALDAAQVTPRIVMEIGSREALREAVIRGMGIGAVSEA 240 Query: 241 EFIPDERFRMVRIAGDPVSTHTYVYCLAERREGRLVGSFMKIAQ 284 E+I D R +++RIA D V T TY+Y LAER+ +++ SF + Q Sbjct: 241 EYIADPRLKVIRIAQDSVYTETYLYYLAERQGSQVIASFQRTLQ 284 >ref|YP_373307.1| LysR family transcriptional regulator [Burkholderia sp. 383] gb|ABB12663.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 291 Score = 301 bits (771), Expect = 7e-80, Method: Composition-based stats. Identities = 163/285 (57%), Positives = 206/285 (72%) Query: 1 MTPSQLRAFLAVARHRGFSAAARALGVSQPTLTTQVQSLEREHNVELFFRRGRRVDLSET 60 MT +QLR+F+AV +H GF+AAAR L SQ T+T+Q+Q+LE+EH VELF RRGRRV+LS Sbjct: 1 MTLTQLRSFIAVVQHGGFTAAARVLSTSQTTITSQIQTLEQEHGVELFHRRGRRVELSAV 60 Query: 61 AQRLLPIAQNIAELELDALNLLVNSGALHVGHLRIGAVGPFHVIEMVDAYRARYPKVELS 120 LPIA+ I E DA LL +SGAL G L+IGAVGPFHV EM++AY A +P + LS Sbjct: 61 GLEFLPIARRICSDETDAAALLRDSGALQRGSLKIGAVGPFHVTEMIEAYHALHPHMHLS 120 Query: 121 IKLGNSAQSLADLANYVTDVAVLASFNDDARFHSVPYADHAVVLFAHRSHPFYQREAVSL 180 + LGNS L DL YV DV V+A +DAR+ + YA V+ F +HPF +R+A++L Sbjct: 121 VALGNSETVLRDLDQYVCDVGVVARAFEDARYFTQRYASFPVIAFVRTTHPFAKRDAIAL 180 Query: 181 AELDQQPLIMREQGSTTRLALEQALQQAGAQPQVVMEIGSREALREAVARGLGLGAVSEA 240 EL +PL+MRE GSTTR ALE A++ AG P++ M+IGSREALREAVARGLG+G VS+A Sbjct: 181 HELAGEPLLMREPGSTTRRALEDAMEAAGLTPRIAMDIGSREALREAVARGLGVGTVSKA 240 Query: 241 EFIPDERFRMVRIAGDPVSTHTYVYCLAERREGRLVGSFMKIAQR 285 E++PD R R +RI GDPV TH +V CL+ERRE RLV SF R Sbjct: 241 EYVPDARLRPLRIDGDPVVTHIHVCCLSERRESRLVASFFDAVAR 285