BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2761.p         (189 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776029.1| poly(3-hydroxyalkanoate) synthetase [Herbasp...   187   7e-46
ref|YP_001791824.1| hypothetical protein Lcho_2794 [Leptothrix c...    86   3e-15

>ref|YP_003776029.1| poly(3-hydroxyalkanoate) synthetase [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64121.1| poly(3-hydroxyalkanoate) synthetase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 832

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 133/189 (70%), Positives = 147/189 (77%), Gaps = 5/189 (2%)

Query: 1   MISIGAFERRSLRLARLLAQLP-MHASVSPQTNWVQLLKEQARITAVAPVEALNALGQML 59
           MISIG FERRSLRLARLLAQLP MHASVS QTNWVQLLKEQARITAVAPVEALNALGQML
Sbjct: 633 MISIGVFERRSLRLARLLAQLPNMHASVSAQTNWVQLLKEQARITAVAPVEALNALGQML 692

Query: 60  PDAASRERALALAAAVMMIEPTLANPRSEIIELLVGTLDVEPDKVIALARKLTTAIGEDS 119
           PDAASRERALAL+AAVMMIEPTLANPRSEIIELL+GTLDV PDKVIALARKLT+AIG  S
Sbjct: 693 PDAASRERALALSAAVMMIEPTLANPRSEIIELLIGTLDVNPDKVIALARKLTSAIGAGS 752

Query: 120 DELRLP--QAESAPAVAPRKAARKPVARKPVAPVKTTTTTKTATKATAKTKVSSKPAPKK 177
           DE+ +P  + E+AP   PR ++ +    KP AP    T  K A  A   +K +      K
Sbjct: 753 DEVTVPAGELEAAPVKRPRASSPRRTEAKP-APTPARTQRKAAAPAQP-SKAAKSVTSAK 810

Query: 178 ATTPAKPRT 186
           +  PAKP +
Sbjct: 811 SLKPAKPSS 819


>ref|YP_001791824.1| hypothetical protein Lcho_2794 [Leptothrix cholodnii SP-6]
 gb|ACB35059.1| conserved hypothetical protein [Leptothrix cholodnii SP-6]
          Length = 739

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/117 (49%), Positives = 77/117 (65%), Gaps = 5/117 (4%)

Query: 1   MISIGAFERRSLRLARLLAQL---PMHASV-SPQTNWVQLLKEQARITAVAPVEALNALG 56
           M S G  ERRSLRL + LA+    P   S   P  NW Q ++E+ARI+AVAPVEA  AL 
Sbjct: 605 MASGGRLERRSLRLVQRLAERRHPPADGSAPRPIFNWHQGVREEARISAVAPVEAYGALA 664

Query: 57  QMLPDAASRERALAL-AAAVMMIEPTLANPRSEIIELLVGTLDVEPDKVIALARKLT 112
           +MLPD  +RERALA+ AAAVM+ + T  N   E+I+ L+  L  +P++V+ LA +LT
Sbjct: 665 RMLPDMPARERALAIGAAAVMVGQTTGTNLALELIDRLITLLGADPERVMNLADQLT 721