BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2760.p (818 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776029.1| poly(3-hydroxyalkanoate) synthetase [Herbasp... 1062 0.0 ref|YP_001791824.1| hypothetical protein Lcho_2794 [Leptothrix c... 800 0.0 ref|NP_883486.1| hypothetical protein BPP1170 [Bordetella parape... 553 e-155 ref|NP_887932.1| hypothetical protein BB1386 [Bordetella bronchi... 552 e-155 ref|NP_879799.1| hypothetical protein BP1005 [Bordetella pertuss... 548 e-153 >ref|YP_003776029.1| poly(3-hydroxyalkanoate) synthetase [Herbaspirillum seropedicae SmR1] gb|ADJ64121.1| poly(3-hydroxyalkanoate) synthetase protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 1062 bits (2746), Expect = 0.0, Method: Composition-based stats. Identities = 526/615 (85%), Positives = 565/615 (91%), Gaps = 2/615 (0%) Query: 190 LDRSAPM-ASRKTSDPHPPE-QPVTPAGAWGDVPNYVQDCVQRSFLFLDTLLDRGNDYLE 247 ++R P+ A+ HP + QPV + +WGDVP Y+QDC+QRSFLFLDTLLDRGNDYLE Sbjct: 2 INRKKPVSAAPNDGHAHPDDDQPVAASASWGDVPAYLQDCLQRSFLFLDTLLDRGNDYLE 61 Query: 248 HLEQGTPPLLKFGHELVLDGHDLPQPCNYALLRLQPPPGLPVDPQARPVVVVDPRAGHGP 307 HLEQGTPPLLKF HE+VLDGHDLPQ CNYALLRLQPP GLPV+PQARPVVVVDPRAGHGP Sbjct: 62 HLEQGTPPLLKFAHEVVLDGHDLPQACNYALLRLQPPAGLPVNPQARPVVVVDPRAGHGP 121 Query: 308 GIGGFKFDSEVGMAMKAGHTVYFVTFRPEPEEGQTLVTVMDAEARFLEEVIRRHPQCPAK 367 GIGGFKFDSEVGMAMKAGHTVYFVTFRPEPE+GQTLVTVMDAEARFLEEVIRRHPQC AK Sbjct: 122 GIGGFKFDSEVGMAMKAGHTVYFVTFRPEPEDGQTLVTVMDAEARFLEEVIRRHPQCSAK 181 Query: 368 PVVIGNCQAGWAMMTLDAVRSELFGPLMMVGAPASYWAGSSTLNPMRYSGANLGGTWLAS 427 PVVIGNCQAGWAMMTLDAVR ELFGPLMMVGAPASYWAGSSTLNPMRYSGANLGGTWLAS Sbjct: 182 PVVIGNCQAGWAMMTLDAVRPELFGPLMMVGAPASYWAGSSTLNPMRYSGANLGGTWLAS 241 Query: 428 LAADLGADRFDGAYLVENFEKLNPANTFWSKYYNLWAGVDQEAARFLEFERWWGGFFRMT 487 LAADLGADRFDGAYLVENFEKLNPANTFW+KYYNLWAGVDQEAARFLEFERWWGGFFRMT Sbjct: 242 LAADLGADRFDGAYLVENFEKLNPANTFWNKYYNLWAGVDQEAARFLEFERWWGGFFRMT 301 Query: 488 GAEIEAITENLFVGNKLARGELEVKGRAVNLRDITAPIVVFASWGDNITPPPQALNWIID 547 GAEIEAITENLFVGNKLARGEL+V+G+ VNLR+I+APIVVFASWGDNITPPPQALNWIID Sbjct: 302 GAEIEAITENLFVGNKLARGELQVRGKPVNLREISAPIVVFASWGDNITPPPQALNWIID 361 Query: 548 VWGDERAIAAAGRTIIYVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEMK 607 WGDERAIAAAGRTIIYVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEMK Sbjct: 362 TWGDERAIAAAGRTIIYVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEMK 421 Query: 608 LERKDGRATQRWDALEPGDYTVHYEHRTMEDLRKLNPEGREEESLFSTISQWSQLNAQWY 667 LERKDGR TQRWD LEPGDYTVHYEHRTMEDLRKLNPEGREEE++FSTISQWSQ+NAQ+Y Sbjct: 422 LERKDGRPTQRWDVLEPGDYTVHYEHRTMEDLRKLNPEGREEEAIFSTISQWSQMNAQFY 481 Query: 668 KTWVRPWVRMTATRDSANALMRMNPLRMQRQLFSDSFFMAPFIRQKAAEARAERATVADD 727 KTWVRPWVRMTATR+SANALMRMNPLRMQRQLFSD+ A FIRQ+AA+ARA+R + Sbjct: 482 KTWVRPWVRMTATRESANALMRMNPLRMQRQLFSDAHPAAAFIRQQAAQARAQRVQLDPQ 541 Query: 728 HPLKQLEKKMAQKITDELNLYRDRRDERTVKMTRQLFGPKGMGAWLKPHEPDAVVAHERA 787 HPLKQ E +MAQKITDELN +RD+RD RTV+MTRQ+FGP G+GAWL P EPDA +A A Sbjct: 542 HPLKQYEARMAQKITDELNAWRDQRDARTVRMTRQMFGPNGLGAWLPPREPDAELAQRWA 601 Query: 788 LRELEIYREKALARL 802 +EL YRE + ++ Sbjct: 602 QQELGRYRETVIGQI 616 >ref|YP_001791824.1| hypothetical protein Lcho_2794 [Leptothrix cholodnii SP-6] gb|ACB35059.1| conserved hypothetical protein [Leptothrix cholodnii SP-6] Length = 739 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 389/588 (66%), Positives = 460/588 (78%) Query: 222 NYVQDCVQRSFLFLDTLLDRGNDYLEHLEQGTPPLLKFGHELVLDGHDLPQPCNYALLRL 281 +Y QD ++RS LFLD L RGN Y+EH+ G P LLKF HELVLDG DLP+PCNYALL + Sbjct: 8 DYAQDAIERSVLFLDALRQRGNIYVEHVNAGEPDLLKFEHELVLDGRDLPRPCNYALLHI 67 Query: 282 QPPPGLPVDPQARPVVVVDPRAGHGPGIGGFKFDSEVGMAMKAGHTVYFVTFRPEPEEGQ 341 P P+DP ARPV+VVDPRAGHGPGIGGFK DSEVGMA++AGH VYFVTFRP+PEEGQ Sbjct: 68 LQPADAPLDPLARPVMVVDPRAGHGPGIGGFKHDSEVGMALRAGHPVYFVTFRPQPEEGQ 127 Query: 342 TLVTVMDAEARFLEEVIRRHPQCPAKPVVIGNCQAGWAMMTLDAVRSELFGPLMMVGAPA 401 TL+ V AEARFLE V RHPQC AKP+VIGNCQAGWAM L A+R ELFGPL++VG+P Sbjct: 128 TLLDVAVAEARFLETVAARHPQCTAKPLVIGNCQAGWAMAGLAAMRPELFGPLILVGSPL 187 Query: 402 SYWAGSSTLNPMRYSGANLGGTWLASLAADLGADRFDGAYLVENFEKLNPANTFWSKYYN 461 SYWAG + LNPMRYSGA LGG WLA+L +DLGADRFDGA+LV+NFE LNPAN+ W +YY Sbjct: 188 SYWAGGAQLNPMRYSGAMLGGAWLAALTSDLGADRFDGAHLVKNFENLNPANSLWGRYYK 247 Query: 462 LWAGVDQEAARFLEFERWWGGFFRMTGAEIEAITENLFVGNKLARGELEVKGRAVNLRDI 521 LW+ VD E+ RFLEFERWWGG+FRM+GAEIEAI ENLFVGNKLARG++++ G+ ++LR+I Sbjct: 248 LWSQVDNESQRFLEFERWWGGYFRMSGAEIEAIVENLFVGNKLARGDVQIGGKRIDLRNI 307 Query: 522 TAPIVVFASWGDNITPPPQALNWIIDVWGDERAIAAAGRTIIYVLHESVGHLGIFVGGSV 581 T+P+VVFASWGDNITPPPQALNWIIDVWGDERAIAAAGR I+YVLHESVGHLGIFVG V Sbjct: 308 TSPVVVFASWGDNITPPPQALNWIIDVWGDERAIAAAGRVIVYVLHESVGHLGIFVGTDV 367 Query: 582 ALKEHDQLVSSLDVIESLPPGLYEMKLERKDGRATQRWDALEPGDYTVHYEHRTMEDLRK 641 A KEHDQ+V+SLDVI++LPPGLYEMKLE KDG A D LEPG Y+VH+EHRTM+ LR Sbjct: 368 ARKEHDQIVTSLDVIDNLPPGLYEMKLELKDGSAPAPTDVLEPGSYSVHFEHRTMDHLRA 427 Query: 642 LNPEGREEESLFSTISQWSQLNAQWYKTWVRPWVRMTATRDSANALMRMNPLRMQRQLFS 701 LNPEGREEE LFST+++ S++N YKTW+RPWVR A+R A+A ++PLR QRQ S Sbjct: 428 LNPEGREEEQLFSTVAKVSEINTGIYKTWMRPWVRPLASRALADAATDLHPLRSQRQTLS 487 Query: 702 DSFFMAPFIRQKAAEARAERATVADDHPLKQLEKKMAQKITDELNLYRDRRDERTVKMTR 761 D+ A + A + R R T+ DDHP + LE+ + I LNLYRD RD+ ++ TR Sbjct: 488 DAHPGAAPLAALAEQVRENRHTLPDDHPGRSLERIASSWIETSLNLYRDLRDQSVIQFTR 547 Query: 762 QLFGPKGMGAWLKPHEPDAVVAHERALRELEIYREKALARLPTAVLPK 809 +FGP G GAWL P PD +A RA ELE R LA + P+ Sbjct: 548 TMFGPMGFGAWLPPEPPDEQIAVTRAQAELERVRHDVLAHIDEGGFPQ 595 >ref|NP_883486.1| hypothetical protein BPP1170 [Bordetella parapertussis 12822] emb|CAE36471.1| conserved hypothetical protein [Bordetella parapertussis] Length = 757 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 278/581 (47%), Positives = 373/581 (64%), Gaps = 3/581 (0%) Query: 193 SAPMASRKTSDPHPPEQPVTPAGAWGDVPNYVQDCVQRSFLFLDTLLDRGNDYLEHLEQG 252 +AP A R D P A W Y D QR L+ D + RGN YL H+ + Sbjct: 2 AAPAADRTAPDRSPAPAAHPAANLWTSAYQYTLDAWQRGILYTDVMRQRGNQYLTHMAKR 61 Query: 253 TPPLLKFGHELVLDGHDLPQPCNYALLRLQPPPGLPVDPQARPVVVVDPRAGHGPGIGGF 312 P +L ELVLDG +P NYALLR+ PP PVDPQ RP +VVDPRAGHGPGIGGF Sbjct: 62 APNVLSMKSELVLDGRKFERPVNYALLRIVPPADAPVDPQKRPFLVVDPRAGHGPGIGGF 121 Query: 313 KFDSEVGMAMKAGHTVYFVTFRPEPEEGQTLVTVMDAEARFLEEVIRRHPQCPAKPVVIG 372 K +SE+G+A++AGH YF TF P P + QT+ VM AEARFLEE+I HPQ +PVV+G Sbjct: 122 KPESEIGVAVRAGHPCYFATFLPHPTDTQTVEDVMRAEARFLEEIIALHPQAEGRPVVVG 181 Query: 373 NCQAGWAMMTLDAVRSELFGPLMMVGAPASYWAGSSTLNPMRYSGANLGGTWLASLAADL 432 NCQAGW +M A+R ELFGP+++ GAP SYWAG +NPMRYSG LGG+WL + +DL Sbjct: 182 NCQAGWQIMMTAAMRPELFGPIIVAGAPLSYWAGWRDMNPMRYSGGLLGGSWLTQMTSDL 241 Query: 433 GADRFDGAYLVENFEKLNPANTFWSKYYNLWAGVDQEAARFLEFERWWGGFFRMTGAEIE 492 G +FDGA+LV+NFE LNPANT WSK YNL+A VD EA R+LEFE+WWGG G EI+ Sbjct: 242 GNGKFDGAWLVQNFENLNPANTLWSKQYNLYAKVDTEAPRYLEFEKWWGGHVFFNGPEIQ 301 Query: 493 AITENLFVGNKLAR-GELEVKGRAVNLRDITAPIVVFASWGDNITPPPQALNWIIDVWGD 551 I +NLFVGN+LA G + G ++LR+I +PI+VF S GDNITPPPQAL WI D++ D Sbjct: 302 YIVDNLFVGNRLATAGLVTSDGIRIDLRNIRSPIIVFCSKGDNITPPPQALGWITDLYQD 361 Query: 552 ERAIAAAGRTIIYVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEMKLERK 611 +R + A +TI+Y +HES+GHLGIFV G+VA KEH + +++DVI+ LPPG+Y+ ++ K Sbjct: 362 DREVVAHNQTIVYAVHESIGHLGIFVSGAVARKEHQEFTANIDVIDVLPPGIYQAEIADK 421 Query: 612 DGRATQRWDALEPGDYTVHYEHRTMEDLRKLNPEGREEESLFSTISQWSQLNAQWYKTWV 671 L GDY + +E R ++D+R + E++ F+ +++ S +N Y+++V Sbjct: 422 TPDTPNA--DLAYGDYVLSFERRRLDDVRAIVERNEEDDQRFAAVARISDINLGLYRSFV 479 Query: 672 RPWVRMTATRDSANALMRMNPLRMQRQLFSDSFFMAPFIRQKAAEARAERATVADDHPLK 731 +PWVR T SA + RM+PLR+ +L SD + Q A + R +R A D+P Sbjct: 480 QPWVRAAVTPQSAEWMQRMHPLRLPYELISDRNPWVAPVAQLAEQVREQRQPAAPDNPFW 539 Query: 732 QLEKKMAQKITDELNLYRDRRDERTVKMTRQLFGPKGMGAW 772 L+K + I L+++RD RD ++ +G + W Sbjct: 540 ALQKMASDAIVAGLDIWRDLRDSACERIFMATYGSPLVQDW 580 >ref|NP_887932.1| hypothetical protein BB1386 [Bordetella bronchiseptica RB50] emb|CAE31884.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 776 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 278/581 (47%), Positives = 374/581 (64%), Gaps = 3/581 (0%) Query: 193 SAPMASRKTSDPHPPEQPVTPAGAWGDVPNYVQDCVQRSFLFLDTLLDRGNDYLEHLEQG 252 +AP A R D P A W Y D QR L+ D + RGN YL H+ + Sbjct: 2 AAPAADRTAPDRSPAPAAHPAANLWTSAYQYTLDAWQRGILYTDVMRQRGNQYLTHMAKR 61 Query: 253 TPPLLKFGHELVLDGHDLPQPCNYALLRLQPPPGLPVDPQARPVVVVDPRAGHGPGIGGF 312 P +L ELVLDG +P NYALLR+ PP PVDPQ RP +VVDPRAGHGPGIGGF Sbjct: 62 APNVLSMKSELVLDGRKFERPVNYALLRIVPPADAPVDPQKRPFLVVDPRAGHGPGIGGF 121 Query: 313 KFDSEVGMAMKAGHTVYFVTFRPEPEEGQTLVTVMDAEARFLEEVIRRHPQCPAKPVVIG 372 K +SE+G+A++AGH YF TF P P + QT+ VM AEARFLEE+I HPQ +PVV+G Sbjct: 122 KPESEIGVAVRAGHPCYFATFLPHPTDTQTVEDVMRAEARFLEEIIALHPQAEGRPVVVG 181 Query: 373 NCQAGWAMMTLDAVRSELFGPLMMVGAPASYWAGSSTLNPMRYSGANLGGTWLASLAADL 432 NCQAGW +M A+R ELFGP+++ GAP SYWAG +NPMRYSG LGG+WL + +DL Sbjct: 182 NCQAGWQIMMTAAMRPELFGPIIVAGAPLSYWAGWRDMNPMRYSGGLLGGSWLTQMTSDL 241 Query: 433 GADRFDGAYLVENFEKLNPANTFWSKYYNLWAGVDQEAARFLEFERWWGGFFRMTGAEIE 492 G +FDGA+LV+NFE LNPANT WSK YNL+A VD EA R+LEFE+WWGG + G EI+ Sbjct: 242 GNGKFDGAWLVQNFENLNPANTLWSKQYNLYAKVDTEAPRYLEFEKWWGGHVFLNGPEIQ 301 Query: 493 AITENLFVGNKLAR-GELEVKGRAVNLRDITAPIVVFASWGDNITPPPQALNWIIDVWGD 551 I +NLFVGN+LA G + G ++LR+I +PI+VF S GDNITPPPQAL WI D++ D Sbjct: 302 YIVDNLFVGNRLATAGLVTSDGIRIDLRNIRSPIIVFCSKGDNITPPPQALGWITDLYQD 361 Query: 552 ERAIAAAGRTIIYVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEMKLERK 611 +R + A +TI+Y +HES+GHLGIFV G+VA KEH + +++DVI+ LPPG+Y+ ++ K Sbjct: 362 DREVVAHNQTIVYAVHESIGHLGIFVSGAVARKEHQEFTANIDVIDVLPPGIYQAEIADK 421 Query: 612 DGRATQRWDALEPGDYTVHYEHRTMEDLRKLNPEGREEESLFSTISQWSQLNAQWYKTWV 671 L GDY + +E R ++D+R + E++ F+ +++ S +N Y+++V Sbjct: 422 TPDTPNA--DLAYGDYVLSFERRRLDDVRAIVERNEEDDQRFAAVARISDINLGLYRSFV 479 Query: 672 RPWVRMTATRDSANALMRMNPLRMQRQLFSDSFFMAPFIRQKAAEARAERATVADDHPLK 731 +PWVR T SA + RM+PLR+ +L SD + Q A + R +R A D+P Sbjct: 480 QPWVRAAVTPQSAEWMQRMHPLRLPYELISDRNPWVAPVAQLAEQVREQRQPAAPDNPFW 539 Query: 732 QLEKKMAQKITDELNLYRDRRDERTVKMTRQLFGPKGMGAW 772 L+K + I L+++RD RD ++ +G + W Sbjct: 540 ALQKMASDAIVAGLDIWRDLRDSACERIFMATYGSPLVQDW 580 >ref|NP_879799.1| hypothetical protein BP1005 [Bordetella pertussis Tohama I] emb|CAE41306.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gb|AEE66418.1| hypothetical protein BPTD_1000 [Bordetella pertussis CS] Length = 782 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 276/581 (47%), Positives = 373/581 (64%), Gaps = 3/581 (0%) Query: 193 SAPMASRKTSDPHPPEQPVTPAGAWGDVPNYVQDCVQRSFLFLDTLLDRGNDYLEHLEQG 252 +A A R D P A W Y D QR L+ D + RGN YL H+ + Sbjct: 2 AASAADRTAPDRSPAPAAHPAANLWTSAYQYTLDAWQRGILYTDVMRQRGNQYLTHMAKR 61 Query: 253 TPPLLKFGHELVLDGHDLPQPCNYALLRLQPPPGLPVDPQARPVVVVDPRAGHGPGIGGF 312 P +L ELVLDG +P NYALLR+ PP PVDPQ P +VVDPRAGHGPGIGGF Sbjct: 62 APNVLSMKSELVLDGRKFERPVNYALLRIVPPADAPVDPQKHPFLVVDPRAGHGPGIGGF 121 Query: 313 KFDSEVGMAMKAGHTVYFVTFRPEPEEGQTLVTVMDAEARFLEEVIRRHPQCPAKPVVIG 372 K +SE+G+A++AGH YF TF P P + QT+ VM AEARFLEE+I HPQ +PVV+G Sbjct: 122 KPESEIGVAVRAGHPCYFATFLPHPTDTQTVEDVMRAEARFLEEIIALHPQAEGRPVVVG 181 Query: 373 NCQAGWAMMTLDAVRSELFGPLMMVGAPASYWAGSSTLNPMRYSGANLGGTWLASLAADL 432 NCQAGW +M A+R ELFGP+++ GAP SYWAG +NPMRYSG LGG+WL + +DL Sbjct: 182 NCQAGWQIMMTAAMRPELFGPIIVAGAPLSYWAGWRDMNPMRYSGGLLGGSWLTQMTSDL 241 Query: 433 GADRFDGAYLVENFEKLNPANTFWSKYYNLWAGVDQEAARFLEFERWWGGFFRMTGAEIE 492 G +FDGA+LV+NFE LNPANT WSK YNL+A VD EA R+LEFE+WWGG + G EI+ Sbjct: 242 GNGKFDGAWLVQNFENLNPANTLWSKQYNLYAKVDTEAPRYLEFEKWWGGHVFLNGPEIQ 301 Query: 493 AITENLFVGNKLAR-GELEVKGRAVNLRDITAPIVVFASWGDNITPPPQALNWIIDVWGD 551 I +NLFVGN+LA G + G ++LR+I +PI+VF S GDNITPPPQAL WI D++ D Sbjct: 302 YIVDNLFVGNRLATAGLVTSDGIRIDLRNIRSPIIVFCSKGDNITPPPQALGWITDLYQD 361 Query: 552 ERAIAAAGRTIIYVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEMKLERK 611 +R + A +TI+Y +HES+GHLGIFV G+VA KEH + +++DVI+ LPPG+Y+ ++ K Sbjct: 362 DREVVAHNQTIVYAVHESIGHLGIFVSGAVARKEHQEFTANIDVIDVLPPGIYQAEIADK 421 Query: 612 DGRATQRWDALEPGDYTVHYEHRTMEDLRKLNPEGREEESLFSTISQWSQLNAQWYKTWV 671 L GDY + +E R ++D+R++ E++ F+ +++ S +N Y+++V Sbjct: 422 TPDTPNA--DLAYGDYVLSFERRRLDDVREIVERNEEDDQRFAAVARISDINLGLYRSFV 479 Query: 672 RPWVRMTATRDSANALMRMNPLRMQRQLFSDSFFMAPFIRQKAAEARAERATVADDHPLK 731 +PWVR T SA + RM+PLR+ +L SD + Q A + R +R A D+P Sbjct: 480 QPWVRAAVTPQSAEWMQRMHPLRLPYELISDRNPWVAPVAQLAEQVREQRQPAAPDNPFW 539 Query: 732 QLEKKMAQKITDELNLYRDRRDERTVKMTRQLFGPKGMGAW 772 L+K + I L+++RD RD ++ +G + W Sbjct: 540 ALQKMASDAIVAGLDIWRDLRDSACERIFMATYGSPLVQDW 580