BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2759.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776030.1| hypothetical protein Hsero_2626 [Herbaspiril... 481 e-134 ref|YP_003776324.1| signal transduction protein [Herbaspirillum ... 230 2e-58 ref|YP_001981874.1| hypothetical protein CJA_1385 [Cellvibrio ja... 164 2e-38 ref|ZP_01307832.1| hypothetical protein RED65_02824 [Oceanobacte... 161 1e-37 ref|YP_002945463.1| signal transduction protein [Variovorax para... 153 2e-35 >ref|YP_003776030.1| hypothetical protein Hsero_2626 [Herbaspirillum seropedicae SmR1] gb|ADJ64122.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 290 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 250/290 (86%), Positives = 269/290 (92%) Query: 1 MELKSLVDQPGKLPTIPKVVQQLMTSFNSEEVSAQDIAHQIAADPTLTAKLLRLANSAFF 60 MELKSLVDQPGKLPT+PKVVQQLM SFN+E++SA +IA QIA DP L+AK+LRLANSAFF Sbjct: 1 MELKSLVDQPGKLPTVPKVVQQLMASFNAEDISAHEIAQQIATDPALSAKVLRLANSAFF 60 Query: 61 HASRTIGTVDDALRMLGFIMVRNLVLGNGMVAAFKSTRGMELPQFWRHTLYTAVAARWLS 120 HASRTIGTVDDALR+LGFIMVRNLVLGNGMVAAFK+TRGM+L QFWRHTLYTAVAARWL+ Sbjct: 61 HASRTIGTVDDALRILGFIMVRNLVLGNGMVAAFKNTRGMDLHQFWRHTLYTAVAARWLA 120 Query: 121 MHAGIHGEDNGDAVFTVGMMHGIGQLQLHAVAAATVAPLDKQCNVLDADRAEREKQTWGF 180 MHAG+ GEDNGDAVFTVGMMHGIGQLQLHAVAA VAPLD+ NVLD+DRAEREK+ WGF Sbjct: 121 MHAGMVGEDNGDAVFTVGMMHGIGQLQLHAVAANAVAPLDRHSNVLDSDRAEREKEAWGF 180 Query: 181 HYADVSAELAAIWNFPEALVTALRSVPDPLAAGRLDRAAAWVHLGAWAARVTVLSLDDEA 240 HYADVSAELAAIW+FP+ALVTALRSVPDPL AGR DRAAAWVHLG WAARV +LS DDE Sbjct: 181 HYADVSAELAAIWHFPDALVTALRSVPDPLGAGRFDRAAAWVHLGGWAARVAILSQDDEN 240 Query: 241 ALATYPVAVGKKLGVDPAWMPVLVKHDPDKAERAMPSLTELAAGLDAMLE 290 A ATYP AVGKKLGVDPAWMP+LVKHDPDKAERAMPSL ELAAGLDAMLE Sbjct: 241 AQATYPAAVGKKLGVDPAWMPLLVKHDPDKAERAMPSLGELAAGLDAMLE 290 >ref|YP_003776324.1| signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ64416.1| signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 128/289 (44%), Positives = 177/289 (61%), Gaps = 16/289 (5%) Query: 1 MELKSLVDQPGKLPTIPKVVQQLMTSFNSEEVSAQDIAHQIAADPTLTAKLLRLANSAFF 60 M L++L Q LP+IPKVVQ+++ SFN+E VS ++IA ++AAD L+AK+LRLANS+++ Sbjct: 1 MNLEALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 Query: 61 HASRTIGTVDDALRMLGFIMVRNLVLGNGMVAAFKSTRGMELPQFWRHTLYTAVAARWLS 120 H SRTIGTVDDA+ MLGF+ VR LV+ GM +FK G++L FWR++L TA+ A+WL+ Sbjct: 61 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA 120 Query: 121 MHAGIHGEDNGDAVFTVGMMHGIGQLQLHAVAAATVAPLDKQCNVLDADRAEREKQTWGF 180 G+ N D FTVG+MH IGQL +HA +DK LDA R + E++++G+ Sbjct: 121 K----RGKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGY 176 Query: 181 HYADVSAELAAIWNFPEALVTALRSVPDPLAAGRLDRAAAWVHLGAWAARVTVLSLDDEA 240 +ADV AELA W FP+ + + P PL G D AA VHL AW AR DE Sbjct: 177 DFADVGAELARRWRFPDEFAKVIEAFPQPL-QGEFDPFAAIVHLAAWRARAHENQYSDEE 235 Query: 241 ALATYPVAVGKKLGVDPAWMPVLVKHDPDKAERAMPSLTELAAGLDAML 289 AT+P V ++LGV + + MP L EL G+ ++ Sbjct: 236 LAATFPAEVAERLGV-----------RLETFTQEMPPLEELGEGMQELI 273 >ref|YP_001981874.1| hypothetical protein CJA_1385 [Cellvibrio japonicus Ueda107] gb|ACE83584.1| hypothetical protein CJA_1385 [Cellvibrio japonicus Ueda107] Length = 327 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 94/256 (36%), Positives = 145/256 (56%), Gaps = 9/256 (3%) Query: 1 MELKSLVDQPGKLPTIPKVVQQLMTSFNSEEVSAQDIAHQIAADPTLTAKLLRLANSAFF 60 +EL++L+D KLP+IP+VV++L+ F+ ++V+ ++I +I+AD LTAKLLR+ANS F+ Sbjct: 58 VELQTLLDHAQKLPSIPEVVRELIEKFDDDQVNTEEIVERISADQVLTAKLLRVANSPFY 117 Query: 61 HASRTIGTVDDALRMLGFIMVRNLVLGNGMVAAFKSTRGMELPQFWRHTLYTAVAARWLS 120 +R + +V DA+ LGF VR LVL G+ AF+ +L FW+ + A A + L+ Sbjct: 118 GGNRNLFSVRDAVFFLGFNAVRTLVLAAGVTGAFRPPASFDLRGFWKLSFSVAAACKTLA 177 Query: 121 MHAGIHGEDNGDAVFTVGMMHGIGQLQLHAVAAATVAPLDKQCNVLDADRAEREKQTWGF 180 ++ DN D FT G++H IG+L + + A L KQ + RE + GF Sbjct: 178 ----VYSRDNVDTAFTCGLIHNIGELLVQIILPGKGALLAKQARHAPLEFG-RECEVLGF 232 Query: 181 HYADVSAELAAIWNFPEALVTALRSVPDPLAAGRLDRAAAWVHLGAWAARVTVLSLDDEA 240 YA++ A LA WNFPEA+ A+ DPLAA R A +HL + V + Sbjct: 233 TYAELGAALARRWNFPEAMAQAIEQQNDPLAARSFSRVAGLIHLALY----RVAYAGESQ 288 Query: 241 ALATYPVAVGKKLGVD 256 +P+A+ +L +D Sbjct: 289 LPPVFPIALALRLDID 304 >ref|ZP_01307832.1| hypothetical protein RED65_02824 [Oceanobacter sp. RED65] gb|EAT11569.1| hypothetical protein RED65_02824 [Oceanobacter sp. RED65] Length = 275 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 135/256 (52%), Gaps = 5/256 (1%) Query: 1 MELKSLVDQPGKLPTIPKVVQQLMTSFNSEEVSAQDIAHQIAADPTLTAKLLRLANSAFF 60 M+ ++ + LP+IPKVVQ L+ +FN ++ DIA +I+ DP LTAK+LRLANSA + Sbjct: 1 MDFDAIFAKSPPLPSIPKVVQDLIETFNHDDFDMDDIATKISMDPVLTAKVLRLANSAHY 60 Query: 61 HASRTIGTVDDALRMLGFIMVRNLVLGNGMVAAFKSTRGMELPQFWRHTLYTAVAARWLS 120 SRTIG+ +A +LGF +R LVL +G+ A K+ + +W A ARWL+ Sbjct: 61 GVSRTIGSTSEASVLLGFSTLRTLVLASGISGAIKTPPEFDREGYWNDNFAVAAIARWLA 120 Query: 121 MHAGIHGEDNGDAVFTVGMMHGIGQLQLHAVAAATVAPLDKQCNVLDADRAEREKQTWGF 180 + GI NG+ FT GM+H IG+L L V ++K R + E G+ Sbjct: 121 PYCGI----NGETAFTAGMLHSIGELILQLVLPDEAKKVEKAMQ-FGGKRLDLENAMLGY 175 Query: 181 HYADVSAELAAIWNFPEALVTALRSVPDPLAAGRLDRAAAWVHLGAWAARVTVLSLDDEA 240 +YA++ AELA W FP +V + P+PL + A +H+ + L D+ Sbjct: 176 NYAEIGAELAKRWKFPNDIVNGICQHPNPLNFDPISPLAGLLHISCYIHESHKQKLSDDE 235 Query: 241 ALATYPVAVGKKLGVD 256 L +P V + +D Sbjct: 236 ILEDFPTTVAHAIDMD 251 >ref|YP_002945463.1| signal transduction protein [Variovorax paradoxus S110] gb|ACS20197.1| putative signal transduction protein [Variovorax paradoxus S110] Length = 275 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 98/289 (33%), Positives = 146/289 (50%), Gaps = 15/289 (5%) Query: 1 MELKSLVDQPGKLPTIPKVVQQLMTSFNSEEVSAQDIAHQIAADPTLTAKLLRLANSAFF 60 M L L LPT+PKVV L+ +E+ + +A +I D LTA++LR+ANS +F Sbjct: 1 MTLDELFTDSHLLPTVPKVVFDLIELLRNEDAAVSVVARKIELDQVLTARVLRMANSPYF 60 Query: 61 HASRTIGTVDDALRMLGFIMVRNLVLGNGMVAAFKSTRGMELPQFWRHTLYTAVAARWLS 120 R I ++ DA+++LGF +R+LV+ +G+ F+ G+ LP FW H+L A AR+L Sbjct: 61 GLRRKILSIQDAIQLLGFSSIRSLVVSSGLTGTFRKVEGVNLPAFWSHSLRVAAVARYL- 119 Query: 121 MHAGIHGEDNGDAVFTVGMMHGIGQLQLHAVAAATVAPLDKQCNVLDADRAEREKQTWGF 180 AG + FTVG MH IG L + +A L+ R E E+Q +GF Sbjct: 120 --AGKTRRVDQSLAFTVGSMHAIGHLIMAGAMKQPMAELNAAHPFDRMGRLEVERQKFGF 177 Query: 181 HYADVSAELAAIWNFPEALVTALRSVPDPLAAGRLDRAAAWVHLGAWAARVTVLSLDDEA 240 HY V A LAA W F V+AL S +P+ A ++D A+ +HL W + L Sbjct: 178 HYGQVGARLAARWEFAPEFVSALSSFANPMEAEQVDPLASVLHLAVWRVALEREGLRIGD 237 Query: 241 ALATYPVAVGKKLGVDPAWMPVLVKHDPDKAERAMPSLTELAAGLDAML 289 A +P +G+ M + MP+ ELA+ L++M+ Sbjct: 238 AQHVWPAQPADAIGLSEDVM------------QDMPAPRELASDLESMI 274