BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2754.p (402 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776037.1| branched-chain amino acid ABC transporter pe... 659 0.0 ref|NP_793838.1| branched-chain amino acid ABC transporter perme... 563 e-158 ref|ZP_03397772.1| branched-chain amino acid ABC transporter, pe... 561 e-158 gb|EGH97357.1| branched-chain amino acid ABC transporter, permea... 561 e-157 ref|ZP_07252269.1| branched-chain amino acid ABC transporter, pe... 558 e-157 >ref|YP_003776037.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64129.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 401 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 379/401 (94%), Positives = 384/401 (95%) Query: 2 MNAAYEKLLGGRSGALGLLVMAVLLLVVFPLTMDMFRLNLVGKYLSYAFVAVGLVLCWGY 61 MNAAYEKLLGGRSGALGLLVMA LLLVVFPLT+DMFRLNLVGKYLSYAFVAVGLVLCWGY Sbjct: 1 MNAAYEKLLGGRSGALGLLVMAALLLVVFPLTLDMFRLNLVGKYLSYAFVAVGLVLCWGY 60 Query: 62 GGILSLGQGVFFGLGGYCMAMFLKLEASDPISTKIQSTPGIPDFMDWNQITALPAMWEPF 121 GGILSLGQGVFFGLGGYCMAMFLKLEASDPISTKIQSTPGIPDFMDWNQITALPAMWEPF Sbjct: 61 GGILSLGQGVFFGLGGYCMAMFLKLEASDPISTKIQSTPGIPDFMDWNQITALPAMWEPF 120 Query: 122 HSFAFTILAVLVVPTALAMLIGLAMFKRRVGDVYFSIVTQAIAAILSILIIGQQGLTGGV 181 HSFAFTI AVL VPT LAMLIG+AMFKRRVGDVYFSIVTQAIAAILSILIIGQQGLTGGV Sbjct: 121 HSFAFTIFAVLAVPTVLAMLIGMAMFKRRVGDVYFSIVTQAIAAILSILIIGQQGLTGGV 180 Query: 182 NGITDLKTLMGWDIRTDHAKLVLYFVNAGLLFGCILFGRYVLGSKLGRLLVAMRDKEERV 241 NGITDLKTLMGWDIRTDHAKLVLYFVNAGLLFGCILFGRYVLGSKLGRLLVAMRDKEERV Sbjct: 181 NGITDLKTLMGWDIRTDHAKLVLYFVNAGLLFGCILFGRYVLGSKLGRLLVAMRDKEERV 240 Query: 242 RFSGYDVASFKVFVFCAAAMFSAIGGAMFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMS 301 RFSGYDVASFKVFVFCAAAMFSAIGGAMFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMS Sbjct: 241 RFSGYDVASFKVFVFCAAAMFSAIGGAMFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMS 300 Query: 302 LLGAVYGTLLVNFGKTYFSETFPELWLFLMGGLFIAVVMYFPNGLAGLWQTQGKRLMDQL 361 LLGAVYGTLLVNFGKTYFSETFPELWLFLMGGLFIAVVMYFPNGLAGLWQTQGKRLM +L Sbjct: 301 LLGAVYGTLLVNFGKTYFSETFPELWLFLMGGLFIAVVMYFPNGLAGLWQTQGKRLMGKL 360 Query: 362 RGQSKPVAPVAAEAAKPVSRASTPEPKRDGIEPGATLEASK 402 RG+ A VAAE K R STP+ KRDGIEPGATLEASK Sbjct: 361 RGEPNAKAAVAAEPLKTTPRPSTPDTKRDGIEPGATLEASK 401 >ref|NP_793838.1| branched-chain amino acid ABC transporter permease [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO57533.1| branched-chain amino acid ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 391 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 299/380 (78%), Positives = 338/380 (88%), Gaps = 1/380 (0%) Query: 5 AYEKLLGGRSGALGLLVMAVLLLVVFPLTMDMFRLNLVGKYLSYAFVAVGLVLCWGYGGI 64 A +KL+GGR G +GLL++A L+L+VFPLT+D FRLN++GKYL+YAFVAVGLVLCWGYGGI Sbjct: 3 AIDKLMGGRQGVIGLLILAALILLVFPLTLDAFRLNMIGKYLTYAFVAVGLVLCWGYGGI 62 Query: 65 LSLGQGVFFGLGGYCMAMFLKLEASDPISTKIQSTPGIPDFMDWNQITALPAMWEPFHSF 124 LSLGQGVFFGLGGYCMAMFLKLEASDP STKIQSTPGIPDFMDWNQIT LPA+W PFHSF Sbjct: 63 LSLGQGVFFGLGGYCMAMFLKLEASDPQSTKIQSTPGIPDFMDWNQITELPALWVPFHSF 122 Query: 125 AFTILAVLVVPTALAMLIGLAMFKRRVGDVYFSIVTQAIAAILSILIIGQQGLTGGVNGI 184 F++ AV+ VP LA +IG A+FKRRVGDVYFSIVTQAIA IL++LIIGQQGLTGG+NGI Sbjct: 123 TFSVFAVIAVPVLLAWIIGTALFKRRVGDVYFSIVTQAIALILTVLIIGQQGLTGGINGI 182 Query: 185 TDLKTLMGWDIRTDHAKLVLYFVNAGLLFGCILFGRYVLGSKLGRLLVAMRDKEERVRFS 244 TDLKTL+GWDIR+D AKL LYFVNAGLL GCIL G+++L SKLGRLL+AMRDKEERVRFS Sbjct: 183 TDLKTLLGWDIRSDGAKLALYFVNAGLLLGCILIGKFILASKLGRLLMAMRDKEERVRFS 242 Query: 245 GYDVASFKVFVFCAAAMFSAIGGAMFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLG 304 GYDVA FK+FV+C AA FSAIGGAMF LQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLG Sbjct: 243 GYDVAGFKIFVYCVAAGFSAIGGAMFALQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLG 302 Query: 305 AVYGTLLVNFGKTYFSETFPELWLFLMGGLFIAVVMYFPNGLAGLWQTQGKRLMDQLRGQ 364 AVYG+LLVN+GKTYFSE+FPELWL+LMGGLFIAVVMYFP+GLAGLW++ G++ + + R Sbjct: 303 AVYGSLLVNYGKTYFSESFPELWLYLMGGLFIAVVMYFPDGLAGLWESHGRKWLGRFRRS 362 Query: 365 SKPVAPVAAEAAK-PVSRAS 383 KPVAP A PV S Sbjct: 363 DKPVAPAIPGAGHAPVKSTS 382 >ref|ZP_03397772.1| branched-chain amino acid ABC transporter, permease protein [Pseudomonas syringae pv. tomato T1] ref|ZP_07233196.1| branched-chain amino acid ABC transporter, permease protein [Pseudomonas syringae pv. tomato Max13] ref|ZP_07256806.1| branched-chain amino acid ABC transporter, permease protein [Pseudomonas syringae pv. tomato NCPPB 1108] gb|EEB59291.1| branched-chain amino acid ABC transporter, permease protein [Pseudomonas syringae pv. tomato T1] Length = 391 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 293/366 (80%), Positives = 334/366 (91%) Query: 5 AYEKLLGGRSGALGLLVMAVLLLVVFPLTMDMFRLNLVGKYLSYAFVAVGLVLCWGYGGI 64 A +KL+GGR G +GLL++A L+L+VFPLT+D FRLN++GKYL+YAFVAVGLVLCWGYGGI Sbjct: 3 AIDKLMGGRQGVIGLLILAALILLVFPLTLDAFRLNMIGKYLTYAFVAVGLVLCWGYGGI 62 Query: 65 LSLGQGVFFGLGGYCMAMFLKLEASDPISTKIQSTPGIPDFMDWNQITALPAMWEPFHSF 124 LSLGQGVFFGLGGYCMAMFLKLEASDP STKIQSTPGIPDFMDWNQIT LPA+W PFHSF Sbjct: 63 LSLGQGVFFGLGGYCMAMFLKLEASDPQSTKIQSTPGIPDFMDWNQITELPALWVPFHSF 122 Query: 125 AFTILAVLVVPTALAMLIGLAMFKRRVGDVYFSIVTQAIAAILSILIIGQQGLTGGVNGI 184 F++ AV+ VP LA +IG A+FKRRVGDVYFSIVTQAIA IL++LIIGQQGLTGG+NGI Sbjct: 123 TFSVFAVIAVPVLLAWIIGTALFKRRVGDVYFSIVTQAIALILTVLIIGQQGLTGGINGI 182 Query: 185 TDLKTLMGWDIRTDHAKLVLYFVNAGLLFGCILFGRYVLGSKLGRLLVAMRDKEERVRFS 244 TD+KTL+GWDIR+D AKL LYFVNAGLL GCIL G+++L SKLGRLL+AMRDKEERVRFS Sbjct: 183 TDIKTLLGWDIRSDGAKLALYFVNAGLLLGCILIGKFILASKLGRLLMAMRDKEERVRFS 242 Query: 245 GYDVASFKVFVFCAAAMFSAIGGAMFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLG 304 GYDVA FK+FV+C AA FSAIGGAMF LQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLG Sbjct: 243 GYDVAGFKIFVYCVAAGFSAIGGAMFALQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLG 302 Query: 305 AVYGTLLVNFGKTYFSETFPELWLFLMGGLFIAVVMYFPNGLAGLWQTQGKRLMDQLRGQ 364 AVYG+LLVN+GKTYFSE+FPELWL+LMGGLFIAVVMYFP+GLAGLW++ G++ + + + Sbjct: 303 AVYGSLLVNYGKTYFSESFPELWLYLMGGLFIAVVMYFPDGLAGLWESHGRKWLGRFKRS 362 Query: 365 SKPVAP 370 KPVAP Sbjct: 363 DKPVAP 368 >gb|EGH97357.1| branched-chain amino acid ABC transporter, permease protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 391 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 293/366 (80%), Positives = 334/366 (91%) Query: 5 AYEKLLGGRSGALGLLVMAVLLLVVFPLTMDMFRLNLVGKYLSYAFVAVGLVLCWGYGGI 64 A +KL+GGR G +GLL++A L+L+VFPLT+D FRLN++GKYL+YAFVAVGLVLCWGYGGI Sbjct: 3 AIDKLMGGRQGVIGLLILAALILLVFPLTLDAFRLNMIGKYLTYAFVAVGLVLCWGYGGI 62 Query: 65 LSLGQGVFFGLGGYCMAMFLKLEASDPISTKIQSTPGIPDFMDWNQITALPAMWEPFHSF 124 LSLGQGVFFGLGGYC+AMFLKLEASDP STKIQSTPGIPDFMDWNQIT LPA+W PFHSF Sbjct: 63 LSLGQGVFFGLGGYCIAMFLKLEASDPESTKIQSTPGIPDFMDWNQITELPALWVPFHSF 122 Query: 125 AFTILAVLVVPTALAMLIGLAMFKRRVGDVYFSIVTQAIAAILSILIIGQQGLTGGVNGI 184 F++ AV+ VP LA +IG A+FKRRVGDVYFSIVTQAIA IL++LIIGQQGLTGG+NGI Sbjct: 123 TFSVFAVIAVPVLLAWIIGTALFKRRVGDVYFSIVTQAIALILTVLIIGQQGLTGGINGI 182 Query: 185 TDLKTLMGWDIRTDHAKLVLYFVNAGLLFGCILFGRYVLGSKLGRLLVAMRDKEERVRFS 244 TDLKTL+GWDIR+D AKL LYFVNAGLL GCIL G+++L SKLGRLL+AMRDKEERVRFS Sbjct: 183 TDLKTLLGWDIRSDGAKLALYFVNAGLLLGCILIGKFILASKLGRLLMAMRDKEERVRFS 242 Query: 245 GYDVASFKVFVFCAAAMFSAIGGAMFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLG 304 GYDVA FK+FV+C AA FSAIGGAMF LQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLG Sbjct: 243 GYDVAGFKIFVYCVAAGFSAIGGAMFALQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLG 302 Query: 305 AVYGTLLVNFGKTYFSETFPELWLFLMGGLFIAVVMYFPNGLAGLWQTQGKRLMDQLRGQ 364 AVYG+LLVN+GKTYFSE+FPELWL+LMGGLFIAVVMYFP+GLAGLW++ G++ + + + Sbjct: 303 AVYGSLLVNYGKTYFSESFPELWLYLMGGLFIAVVMYFPDGLAGLWESHGRKWLGRFKRS 362 Query: 365 SKPVAP 370 KPVAP Sbjct: 363 DKPVAP 368 >ref|ZP_07252269.1| branched-chain amino acid ABC transporter, permease protein [Pseudomonas syringae pv. tomato K40] Length = 391 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 291/366 (79%), Positives = 333/366 (90%) Query: 5 AYEKLLGGRSGALGLLVMAVLLLVVFPLTMDMFRLNLVGKYLSYAFVAVGLVLCWGYGGI 64 A +KL+GGR G +GLL++A L+L+VFPLT+D FRLN++GKYL+YAFVAVGLVLCWGYGGI Sbjct: 3 AIDKLMGGRQGVIGLLILAALILLVFPLTLDAFRLNMIGKYLTYAFVAVGLVLCWGYGGI 62 Query: 65 LSLGQGVFFGLGGYCMAMFLKLEASDPISTKIQSTPGIPDFMDWNQITALPAMWEPFHSF 124 LSLGQGVFFGLGGYCMAMFLKLEASDP STKIQSTPGIPDFMDWNQIT LPA+W PFHSF Sbjct: 63 LSLGQGVFFGLGGYCMAMFLKLEASDPQSTKIQSTPGIPDFMDWNQITELPALWVPFHSF 122 Query: 125 AFTILAVLVVPTALAMLIGLAMFKRRVGDVYFSIVTQAIAAILSILIIGQQGLTGGVNGI 184 F++ AV+ VP LA +IG A+FKRRVGDVYFSIVTQAIA IL++LIIGQQGLTGG+NGI Sbjct: 123 TFSVFAVIAVPVLLAWIIGTALFKRRVGDVYFSIVTQAIALILTVLIIGQQGLTGGINGI 182 Query: 185 TDLKTLMGWDIRTDHAKLVLYFVNAGLLFGCILFGRYVLGSKLGRLLVAMRDKEERVRFS 244 TD+KTL+GWDIR+D AKL LYFVNAGLL GCIL G+++L SKLGRLL+AMRDKEERVRFS Sbjct: 183 TDIKTLLGWDIRSDGAKLALYFVNAGLLLGCILIGKFILASKLGRLLMAMRDKEERVRFS 242 Query: 245 GYDVASFKVFVFCAAAMFSAIGGAMFTLQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLG 304 GYDVA FK+FV+C AA FSAIGG +F LQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLG Sbjct: 243 GYDVAGFKIFVYCVAAGFSAIGGGLFALQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLG 302 Query: 305 AVYGTLLVNFGKTYFSETFPELWLFLMGGLFIAVVMYFPNGLAGLWQTQGKRLMDQLRGQ 364 AVYG+LLVN+GKTYFSE+FPELWL+LMGGLFIAVVMYFP+GLAGLW++ G++ + + + Sbjct: 303 AVYGSLLVNYGKTYFSESFPELWLYLMGGLFIAVVMYFPDGLAGLWESHGRKWLGRFKRS 362 Query: 365 SKPVAP 370 KPVAP Sbjct: 363 DKPVAP 368