BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2753.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776038.1| branched-chain amino acid ABC transporter pe... 483 e-134 ref|ZP_08276252.1| Urea ABC transporter, permease protein UrtB [... 473 e-131 ref|YP_004753578.1| urea ABC transporter permease UrtB [Collimon... 467 e-130 gb|AEA83418.1| branched-chain amino acid ABC transporter, permea... 432 e-119 ref|YP_004355044.1| High-affinity branched-chain amino acid ABC ... 430 e-118 >ref|YP_003776038.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64130.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 291/293 (99%), Positives = 291/293 (99%) Query: 13 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQ 72 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQ Sbjct: 1 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQ 60 Query: 73 PFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKE 132 PFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKE Sbjct: 61 PFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKE 120 Query: 133 VSATLPDWLMGSFKPTDAIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRV 192 VSATLPDWLMGSFKPTD IDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRV Sbjct: 121 VSATLPDWLMGSFKPTDDIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRV 180 Query: 193 MSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQS 252 MSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQS Sbjct: 181 MSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQS 240 Query: 253 LIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSAKVRK 305 LIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFS KVRK Sbjct: 241 LIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVKVRK 293 >ref|ZP_08276252.1| Urea ABC transporter, permease protein UrtB [Oxalobacteraceae bacterium IMCC9480] gb|EGF30280.1| Urea ABC transporter, permease protein UrtB [Oxalobacteraceae bacterium IMCC9480] Length = 305 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 279/305 (91%), Positives = 294/305 (96%) Query: 1 MVSLSEFGAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLL 60 M LSEFGAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAY+TYLL Sbjct: 1 MEWLSEFGAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYMTYLL 60 Query: 61 SHLTTTYAPALQPFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAM 120 S LTT YAPA QP+YFF+AIVLSF AYGVGYLTE L+ISRLYKRPLDTLLATWGLSL M Sbjct: 61 STLTTKYAPAFQPYYFFLAIVLSFLAAYGVGYLTERLMISRLYKRPLDTLLATWGLSLLM 120 Query: 121 QQTFRSIFGAKEVSATLPDWLMGSFKPTDAIDIPLNGLFMMGLTVLLTGAIFVLLFRSRW 180 QQTFRSIFGAKEVSATLPDWLMGSFKPTD+IDIP+NG FMMGLTV++TG IF+LLFRSRW Sbjct: 121 QQTFRSIFGAKEVSATLPDWLMGSFKPTDSIDIPINGAFMMGLTVVMTGGIFLLLFRSRW 180 Query: 181 GLQVRATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVD 240 GLQVRATMQNR+MSGAVGINTRKVDRTTFALGCGVAGVAG+AFTTIGSTGPTSGSLYIVD Sbjct: 181 GLQVRATMQNRLMSGAVGINTRKVDRTTFALGCGVAGVAGSAFTTIGSTGPTSGSLYIVD 240 Query: 241 TFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFS 300 TFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFL+GSMAKVLTLSAVI+ILM+RPQGLFS Sbjct: 241 TFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLSGSMAKVLTLSAVIVILMMRPQGLFS 300 Query: 301 AKVRK 305 +KVRK Sbjct: 301 SKVRK 305 >ref|YP_004753578.1| urea ABC transporter permease UrtB [Collimonas fungivorans Ter331] gb|AEK62755.1| Urea ABC transporter, permease protein UrtB [Collimonas fungivorans Ter331] Length = 310 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 277/305 (90%), Positives = 294/305 (96%) Query: 1 MVSLSEFGAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLL 60 +VSLSEFGAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLL Sbjct: 6 VVSLSEFGAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLL 65 Query: 61 SHLTTTYAPALQPFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAM 120 S LTT YAP+LQP+YFF AI LSF AY VGY+TE L+ISRLYKRPLDTLLATWGLSLAM Sbjct: 66 SKLTTLYAPSLQPYYFFAAIALSFVTAYIVGYITEWLMISRLYKRPLDTLLATWGLSLAM 125 Query: 121 QQTFRSIFGAKEVSATLPDWLMGSFKPTDAIDIPLNGLFMMGLTVLLTGAIFVLLFRSRW 180 QQTFRSIFGAKEVSATLPDWLMGSFKPTD+IDIP+NG+FMM LT +LTG IF+LLFRSRW Sbjct: 126 QQTFRSIFGAKEVSATLPDWLMGSFKPTDSIDIPINGVFMMALTAVLTGVIFLLLFRSRW 185 Query: 181 GLQVRATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVD 240 GLQVRATMQNR+MSGAVGINTRKVDR+TFALGCGVAG+AGAAFTTIGSTGPTSGSLYIVD Sbjct: 186 GLQVRATMQNRLMSGAVGINTRKVDRSTFALGCGVAGIAGAAFTTIGSTGPTSGSLYIVD 245 Query: 241 TFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFS 300 TFLVVVFGGAQSL+GTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILIL+LRPQGLF+ Sbjct: 246 TFLVVVFGGAQSLLGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILLLRPQGLFA 305 Query: 301 AKVRK 305 AK+RK Sbjct: 306 AKIRK 310 >gb|AEA83418.1| branched-chain amino acid ABC transporter, permease protein [Pseudomonas stutzeri DSM 4166] Length = 305 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 256/305 (83%), Positives = 277/305 (90%) Query: 1 MVSLSEFGAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLL 60 M LSEFGAI AMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLT+GAY T+L+ Sbjct: 1 MEWLSEFGAIAAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTVGAYTTFLV 60 Query: 61 SHLTTTYAPALQPFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAM 120 S LT Y PALQP+YFFVAIVLSF +A +G+L E LIS+LY RPLDTLLATWGLSL M Sbjct: 61 STLTLKYVPALQPYYFFVAIVLSFLIAGALGWLAEWALISKLYHRPLDTLLATWGLSLVM 120 Query: 121 QQTFRSIFGAKEVSATLPDWLMGSFKPTDAIDIPLNGLFMMGLTVLLTGAIFVLLFRSRW 180 QQ FRSIFGA+EVSA++PDWLMGSF PTDAIDIP NGLF+M +T+LLT AIF LL+RSRW Sbjct: 121 QQAFRSIFGAREVSASMPDWLMGSFNPTDAIDIPRNGLFVMAVTLLLTLAIFFLLYRSRW 180 Query: 181 GLQVRATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVD 240 GLQVRAT+QNRVM+ +VGINT+KVDR TFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVD Sbjct: 181 GLQVRATVQNRVMARSVGINTKKVDRMTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVD 240 Query: 241 TFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFS 300 TFLVVVFGGA SL GTIASAFSIAQTQS AEFF++GSMAKVLTLSAVILILMLRPQGLFS Sbjct: 241 TFLVVVFGGAASLFGTIASAFSIAQTQSIAEFFISGSMAKVLTLSAVILILMLRPQGLFS 300 Query: 301 AKVRK 305 KVRK Sbjct: 301 IKVRK 305 >ref|YP_004355044.1| High-affinity branched-chain amino acid ABC transporter permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA70040.1| putative High-affinity branched-chain amino acid ABC transporter, permease component [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 305 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 252/305 (82%), Positives = 274/305 (89%) Query: 1 MVSLSEFGAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLL 60 M LSEFGAI AMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAY TY+ Sbjct: 1 MEWLSEFGAIAAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYTTYVC 60 Query: 61 SHLTTTYAPALQPFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAM 120 S LT+ + P QP+YFF+AI LSF VA +G+L E +ISRLYKRPLDTLLATWGLSL M Sbjct: 61 SSLTSHFTPWFQPYYFFIAIALSFLVAGAIGWLVEWAMISRLYKRPLDTLLATWGLSLVM 120 Query: 121 QQTFRSIFGAKEVSATLPDWLMGSFKPTDAIDIPLNGLFMMGLTVLLTGAIFVLLFRSRW 180 QQTFRS+FGA+EVSAT P+WLMGSF T++I+IP NGLFMM LT+LLTGAIF+LL+RSRW Sbjct: 121 QQTFRSVFGAREVSATPPEWLMGSFNFTESIEIPRNGLFMMALTLLLTGAIFLLLYRSRW 180 Query: 181 GLQVRATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVD 240 GLQVRAT+QNR+MS AVGINTRKVDR TFALGCGVAGVAGAAFTTIGSTGPT+GS YIVD Sbjct: 181 GLQVRATVQNRLMSRAVGINTRKVDRMTFALGCGVAGVAGAAFTTIGSTGPTAGSQYIVD 240 Query: 241 TFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFS 300 TFLVVVFGGAQSL GTIASAF IAQTQS +EFFL+GSMAKVLTLS VILILMLRPQGLFS Sbjct: 241 TFLVVVFGGAQSLFGTIASAFVIAQTQSISEFFLSGSMAKVLTLSGVILILMLRPQGLFS 300 Query: 301 AKVRK 305 KVRK Sbjct: 301 IKVRK 305