BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2752.p (433 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776039.1| branched-chain amino acid ABC transporter pe... 754 0.0 ref|YP_004753579.1| urea ABC transporter urea binding protein [C... 731 0.0 ref|ZP_08274366.1| Urea ABC transporter, urea binding protein [O... 726 0.0 ref|ZP_06842711.1| urea ABC transporter, urea binding protein [B... 681 0.0 ref|YP_553605.1| branched chain amino acid ABC transporter perip... 680 0.0 >ref|YP_003776039.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64131.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 418 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 406/407 (99%), Positives = 406/407 (99%) Query: 27 LPRRKILMGLAAGAAAAALPGMASAQQYPTAKVNTTKLAITDTEVTVGQLHSATGTMAIS 86 PRRKILMGLAAGAAAAALPGMASAQQYPTAKVNTTKLAITDTEVTVGQLHSATGTMAIS Sbjct: 12 FPRRKILMGLAAGAAAAALPGMASAQQYPTAKVNTTKLAITDTEVTVGQLHSATGTMAIS 71 Query: 87 ETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLLENDRVAAVFGCW 146 ETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLLENDRVAAVFGCW Sbjct: 72 ETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLLENDRVAAVFGCW 131 Query: 147 TSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQVLAGLNWVAKEKKAKT 206 TSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQVLAGLNWVAKEKKAKT Sbjct: 132 TSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQVLAGLNWVAKEKKAKT 191 Query: 207 FFLVGSDYIWPRTSNKIARKHIENVLKGSVVGEEYYPLGNTQFGSLINKIKLKKPDVIFA 266 FFLVGSDYIWPRTSNKIARKHIENVLKGSVVGEEYYPLGNTQFGSLINKIKLKKPDVIFA Sbjct: 192 FFLVGSDYIWPRTSNKIARKHIENVLKGSVVGEEYYPLGNTQFGSLINKIKLKKPDVIFA 251 Query: 267 DVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENVEGFFASMKYFQSLDNA 326 DVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENVEGFFASMKYFQSLDNA Sbjct: 252 DVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENVEGFFASMKYFQSLDNA 311 Query: 327 NNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVEKAGSFDVDKVVAASPGIELKTA 386 NNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVEKAGSFDVDKVVAASPGIELKTA Sbjct: 312 NNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVEKAGSFDVDKVVAASPGIELKTA 371 Query: 387 PEGYVKVHENHHLWSKTRIGEAQKDGQFKVVYESELIEPNPFPKGYQ 433 PEGYVKVHENHHLWSKTRIGEAQKDGQFKVVYESELIEPNPFPKGYQ Sbjct: 372 PEGYVKVHENHHLWSKTRIGEAQKDGQFKVVYESELIEPNPFPKGYQ 418 >ref|YP_004753579.1| urea ABC transporter urea binding protein [Collimonas fungivorans Ter331] gb|AEK62756.1| Urea ABC transporter, urea binding protein [Collimonas fungivorans Ter331] Length = 417 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 384/418 (91%), Positives = 398/418 (95%), Gaps = 1/418 (0%) Query: 16 MSHSSSSNPPSLPRRKILMGLAAGAAAAALPGMASAQQYPTAKVNTTKLAITDTEVTVGQ 75 MSH S+S+ PS RRK+L+GLAA AA A + AQ TAK+NTTKLA+TDTEVTVGQ Sbjct: 1 MSHRSASDKPSFQRRKVLLGLAASAALALP-AIGFAQSPATAKINTTKLAVTDTEVTVGQ 59 Query: 76 LHSATGTMAISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLLE 135 LHSATGTMAISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLLE Sbjct: 60 LHSATGTMAISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLLE 119 Query: 136 NDRVAAVFGCWTSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQVLAGL 195 +D VAAVFGCWTSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQVLAGL Sbjct: 120 SDHVAAVFGCWTSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQVLAGL 179 Query: 196 NWVAKEKKAKTFFLVGSDYIWPRTSNKIARKHIENVLKGSVVGEEYYPLGNTQFGSLINK 255 NWVAKEKKAKTFFLVGSDYIWPRTSNKIARKHIENVLKGSVVGEEYYPLGNTQFGSLINK Sbjct: 180 NWVAKEKKAKTFFLVGSDYIWPRTSNKIARKHIENVLKGSVVGEEYYPLGNTQFGSLINK 239 Query: 256 IKLKKPDVIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENVEGFFA 315 IKLKKPDVIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENVEGF++ Sbjct: 240 IKLKKPDVIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENVEGFYS 299 Query: 316 SMKYFQSLDNANNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVEKAGSFDVDKVV 375 SMKYFQSLDN NNKKFVAEFKAKFG N+VIGDVTQAAYLGPWLWKAAVEKAGSFDVDKVV Sbjct: 300 SMKYFQSLDNPNNKKFVAEFKAKFGPNAVIGDVTQAAYLGPWLWKAAVEKAGSFDVDKVV 359 Query: 376 AASPGIELKTAPEGYVKVHENHHLWSKTRIGEAQKDGQFKVVYESELIEPNPFPKGYQ 433 AASPG ELK+APEGYVKVH NHHLWSKTRIGEAQKDGQFKV+YES+LIEPNPFPKGYQ Sbjct: 360 AASPGFELKSAPEGYVKVHPNHHLWSKTRIGEAQKDGQFKVIYESDLIEPNPFPKGYQ 417 >ref|ZP_08274366.1| Urea ABC transporter, urea binding protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF32159.1| Urea ABC transporter, urea binding protein [Oxalobacteraceae bacterium IMCC9480] Length = 417 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 373/418 (89%), Positives = 393/418 (94%), Gaps = 1/418 (0%) Query: 16 MSHSSSSNPPSLPRRKILMGLAAGAAAAALPGMASAQQYPTAKVNTTKLAITDTEVTVGQ 75 MS S ++ S RRK+LMGLA A+ A P M AQ T+K+NTTKLAITDTEVTVGQ Sbjct: 1 MSPRSPADIKSAQRRKVLMGLAV-ASTLAFPVMGFAQSPATSKINTTKLAITDTEVTVGQ 59 Query: 76 LHSATGTMAISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLLE 135 LHSATGTMAISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLL Sbjct: 60 LHSATGTMAISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLLV 119 Query: 136 NDRVAAVFGCWTSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQVLAGL 195 +DRVA VFGCWTSASRKAVLPVFEK+NGLLYYPTFYEGLEQSKNVFYTGQEATQQVLAGL Sbjct: 120 SDRVATVFGCWTSASRKAVLPVFEKENGLLYYPTFYEGLEQSKNVFYTGQEATQQVLAGL 179 Query: 196 NWVAKEKKAKTFFLVGSDYIWPRTSNKIARKHIENVLKGSVVGEEYYPLGNTQFGSLINK 255 +W+AKEKKAKTFFLVGSDYIWPRTSNKIARKHIENV+KGSVVGEEYYPLGNTQFGSLINK Sbjct: 180 DWIAKEKKAKTFFLVGSDYIWPRTSNKIARKHIENVIKGSVVGEEYYPLGNTQFGSLINK 239 Query: 256 IKLKKPDVIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENVEGFFA 315 IKLKKPDVIF DVVGGSNVAFYKQLKAAGVTAKTQ LLTISVTEDEMLGIGGENVEGF+A Sbjct: 240 IKLKKPDVIFTDVVGGSNVAFYKQLKAAGVTAKTQTLLTISVTEDEMLGIGGENVEGFYA 299 Query: 316 SMKYFQSLDNANNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVEKAGSFDVDKVV 375 SMKYFQSL+N NNKKFVA+FKAK+GAN+V+GDVTQAAYLGPWLWKAAVEKAGSFDVDKV+ Sbjct: 300 SMKYFQSLENPNNKKFVADFKAKYGANAVMGDVTQAAYLGPWLWKAAVEKAGSFDVDKVI 359 Query: 376 AASPGIELKTAPEGYVKVHENHHLWSKTRIGEAQKDGQFKVVYESELIEPNPFPKGYQ 433 AAS G+ELK APEGYVKVHENHHLWSKTRIG+AQKDGQFKVVYESELIEPNPFPKGYQ Sbjct: 360 AASAGLELKNAPEGYVKVHENHHLWSKTRIGQAQKDGQFKVVYESELIEPNPFPKGYQ 417 >ref|ZP_06842711.1| urea ABC transporter, urea binding protein [Burkholderia sp. Ch1-1] gb|EFG69670.1| urea ABC transporter, urea binding protein [Burkholderia sp. Ch1-1] Length = 421 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 348/422 (82%), Positives = 377/422 (89%), Gaps = 5/422 (1%) Query: 16 MSH--SSSSNPPSLPRRKILMGLAAGAAAAALPGMASAQQYPTAKVNTTKLAITDTEVTV 73 MSH + S PS RRK+LMGLAA A A A+ G+A AQQ+PTAKVNTT LA+TDTEVTV Sbjct: 1 MSHDDQNESGMPSALRRKLLMGLAA-APALAMSGIARAQQFPTAKVNTTHLAVTDTEVTV 59 Query: 74 GQLHSATGTMAISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKL 133 GQLHSATGTMAISETGSIQAERLAI+QIN+ GGILGRKIKIIQEDGASDWPTFAEK+KKL Sbjct: 60 GQLHSATGTMAISETGSIQAERLAIEQINSAGGILGRKIKIIQEDGASDWPTFAEKSKKL 119 Query: 134 LENDRVAAVFGCWTSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQVLA 193 LEND VAAVFGCWTSASRKAVLP+FE+DNGLLYYPTFYEGLEQS NVFYTGQEATQQ+L Sbjct: 120 LENDHVAAVFGCWTSASRKAVLPIFERDNGLLYYPTFYEGLEQSHNVFYTGQEATQQILW 179 Query: 194 GLNWVAKEKKAKTFFLVGSDYIWPRTSNKIARKHIENVLKG-SVVGEEYYPLGNTQFGSL 252 GLNW + KKAK+FFL+GSDYIWPRTSNKIARKHIE L G VVGEEYYPLG T F SL Sbjct: 180 GLNWANQTKKAKSFFLIGSDYIWPRTSNKIARKHIEQHLTGCKVVGEEYYPLGTTNFNSL 239 Query: 253 INKIKLKKPDVIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENVEG 312 INKIK+ KPD I+A +VGGSNVAFYKQLKAAG+TA Q LLTISVTEDE+LGIGGEN G Sbjct: 240 INKIKIAKPDCIYAIIVGGSNVAFYKQLKAAGITADKQFLLTISVTEDEVLGIGGENFAG 299 Query: 313 FFASMKYFQSLDNANNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVEKAGSFDVD 372 F+++MKYF+SLDN NNKKFVA FKAK+G SVIGDVTQAAYLGPWLWKAAVEKAGSFDVD Sbjct: 300 FYSAMKYFESLDNDNNKKFVAAFKAKYGPKSVIGDVTQAAYLGPWLWKAAVEKAGSFDVD 359 Query: 373 KVVAASPGIELKTAPEGYVKVHENHHLWSKTRIGEAQKDGQFKVVYES-ELIEPNPFPKG 431 KVVAASPGIELKTAPEGYVK+H NHHLWS+TRIG+AQ DGQFKVV ES +LIEPNPFPKG Sbjct: 360 KVVAASPGIELKTAPEGYVKIHANHHLWSRTRIGQAQVDGQFKVVAESPDLIEPNPFPKG 419 Query: 432 YQ 433 YQ Sbjct: 420 YQ 421 >ref|YP_553605.1| branched chain amino acid ABC transporter periplasmic ligand-binding protein [Burkholderia xenovorans LB400] gb|ABE34255.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia xenovorans LB400] Length = 421 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 347/422 (82%), Positives = 377/422 (89%), Gaps = 5/422 (1%) Query: 16 MSH--SSSSNPPSLPRRKILMGLAAGAAAAALPGMASAQQYPTAKVNTTKLAITDTEVTV 73 MSH + S PS RRK+LMGLAA A A A+ G+A AQQ+PTAKVNTT LA+TDTEVTV Sbjct: 1 MSHDDQNESGMPSALRRKLLMGLAA-APALAMSGIARAQQFPTAKVNTTHLAVTDTEVTV 59 Query: 74 GQLHSATGTMAISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKL 133 GQLHSATGTMAISETGSIQAERLAI+QIN+ GGILGRKI+IIQEDGASDWPTFAEK+KKL Sbjct: 60 GQLHSATGTMAISETGSIQAERLAIEQINSAGGILGRKIRIIQEDGASDWPTFAEKSKKL 119 Query: 134 LENDRVAAVFGCWTSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQVLA 193 LEND VAAVFGCWTSASRKAVLP+FE+DNGLLYYPTFYEGLEQS NVFYTGQEATQQ+L Sbjct: 120 LENDHVAAVFGCWTSASRKAVLPIFERDNGLLYYPTFYEGLEQSHNVFYTGQEATQQILW 179 Query: 194 GLNWVAKEKKAKTFFLVGSDYIWPRTSNKIARKHIENVLKG-SVVGEEYYPLGNTQFGSL 252 GLNW + KKAK+FFL+GSDYIWPRTSNKIARKHIE L G VVGEEYYPLG T F SL Sbjct: 180 GLNWANQTKKAKSFFLIGSDYIWPRTSNKIARKHIEQHLTGCKVVGEEYYPLGTTNFNSL 239 Query: 253 INKIKLKKPDVIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENVEG 312 INKIK+ KPD I+A +VGGSNVAFYKQLKAAG+TA Q LLTISVTEDE+LGIGGEN G Sbjct: 240 INKIKIAKPDCIYAIIVGGSNVAFYKQLKAAGITADKQFLLTISVTEDEVLGIGGENFAG 299 Query: 313 FFASMKYFQSLDNANNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVEKAGSFDVD 372 F+++MKYF+SLDN NNKKFVA FKAK+G SVIGDVTQAAYLGPWLWKAAVEKAGSFDVD Sbjct: 300 FYSAMKYFESLDNDNNKKFVAAFKAKYGPKSVIGDVTQAAYLGPWLWKAAVEKAGSFDVD 359 Query: 373 KVVAASPGIELKTAPEGYVKVHENHHLWSKTRIGEAQKDGQFKVVYES-ELIEPNPFPKG 431 KVVAASPGIELKTAPEGYVK+H NHHLWS+TRIG+AQ DGQFKVV ES +LIEPNPFPKG Sbjct: 360 KVVAASPGIELKTAPEGYVKIHANHHLWSRTRIGQAQVDGQFKVVAESPDLIEPNPFPKG 419 Query: 432 YQ 433 YQ Sbjct: 420 YQ 421