BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2748.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776041.1| two component response regulator protein [He... 480 e-133 ref|YP_004753581.1| two component LuxR family transcriptional re... 388 e-106 ref|YP_003674332.1| two component LuxR family transcriptional re... 278 1e-72 ref|YP_003050486.1| two component LuxR family transcriptional re... 270 2e-70 ref|YP_545870.1| two component LuxR family transcriptional regul... 265 1e-68 >ref|YP_003776041.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64133.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 260/332 (78%), Positives = 276/332 (83%), Gaps = 19/332 (5%) Query: 1 MISTTFDRHVVLIVDDMPDNLAMLSDALDESGHIVLVATDGLAALERLDHITPDLILLDA 60 MISTTFDRHVVLIVDDMPDNLAMLSDALD+SGHIVLVATDGL+ALERLDHITPDLILLDA Sbjct: 1 MISTTFDRHVVLIVDDMPDNLAMLSDALDDSGHIVLVATDGLSALERLDHITPDLILLDA 60 Query: 61 MMPGIDGFETCRRIKQVKRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVA 120 MMPGIDGFETCRRIKQV+RVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVA Sbjct: 61 MMPGIDGFETCRRIKQVRRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVA 120 Query: 121 RIGAHIKTARMMSQARGMLEHAAHAVIVLSGNGLPLWQTSKASLWLEKYFPAGAGANATH 180 RIGAHI+TARMM QARG LEHAAHAVIVL GNGLP+W TSKAS WLEKY+ G A A+H Sbjct: 121 RIGAHIRTARMMVQARGALEHAAHAVIVLGGNGLPMWLTSKASQWLEKYY--GPAAPASH 178 Query: 181 KLPMMLQSWLNESLVRQRQGNG--DIRPLVVTQGDCELRVALSAAGQGHEITLLLEEKKL 238 KLP LQ WLNE LVRQRQG + PL+V Q EL + LS GQGH ++L+LEEK Sbjct: 179 KLPAALQVWLNEQLVRQRQGESLDQVAPLIVRQPQGELHITLSGPGQGHGVSLVLEEKPT 238 Query: 239 AADIAASSSIAAMRPTLGHDASANPPA--GCFHLTPRESDVLLWLGKGKTNRDIAEILGM 296 AA RP D + PP GC LTPRESDVLLWLGKGKTNRDIA+ILGM Sbjct: 239 G---------AAARP---EDGATLPPTLEGC-RLTPRESDVLLWLGKGKTNRDIADILGM 285 Query: 297 SPRTVNKHLEHIFVKLGVETRSAAAVLASSLT 328 SPRTVNKHLEHIFVKLGVETRSAAAVLA + T Sbjct: 286 SPRTVNKHLEHIFVKLGVETRSAAAVLARAST 317 >ref|YP_004753581.1| two component LuxR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62758.1| two component transcriptional regulator, LuxR family [Collimonas fungivorans Ter331] Length = 329 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 205/310 (66%), Positives = 234/310 (75%), Gaps = 23/310 (7%) Query: 8 RHVVLIVDDMPDNLAMLSDALDESGHIVLVATDGLAALERLDHITPDLILLDAMMPGIDG 67 R VVLIVDDMPDNLA+LSDALDESGHIVLVATDG +A++RL +ITPDLILLDA+MPG+DG Sbjct: 24 RPVVLIVDDMPDNLALLSDALDESGHIVLVATDGASAIQRLGYITPDLILLDAVMPGLDG 83 Query: 68 FETCRRIKQVKRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVARIGAHIK 127 FETCRRIK + AHVPVVFMTGL+ETEHVVRGF+VGGIDYVTKPI+P E+VAR+ AHIK Sbjct: 84 FETCRRIKLLASAAHVPVVFMTGLTETEHVVRGFQVGGIDYVTKPIQPLEIVARVAAHIK 143 Query: 128 TARMMSQARGMLEHAAHAVIVLSGNGLPLWQTSKASLWLEKYFPAGAGANATHKLPMMLQ 187 TARMMSQAR +++ AAHAVIVL +G PLWQT KAS WLEKYFP + KLP LQ Sbjct: 144 TARMMSQARDVIDAAAHAVIVLGIDGAPLWQTGKASFWLEKYFP----RSDQRKLPPQLQ 199 Query: 188 SWLNESLVRQRQGNGDIRPLVVTQGDCELRVALSAAGQGHEITLLLEEKKLAADIAASSS 247 WLNE+LV RQ ++PLV+ D EL + LS Q E+TLLLEEK L A Sbjct: 200 FWLNENLVLLRQTQQPLQPLVINGDDGELTINLSKNTQSAELTLLLEEKSLVLPNAVQLE 259 Query: 248 IAAMRPTLGHDASANPPAGCFHLTPRESDVLLWLGKGKTNRDIAEILGMSPRTVNKHLEH 307 + LTPRE+DVL W+ KGKTNRDIAEILGMSPRTVNKHLEH Sbjct: 260 -------------------GYRLTPRETDVLAWVSKGKTNRDIAEILGMSPRTVNKHLEH 300 Query: 308 IFVKLGVETR 317 I++KLGVETR Sbjct: 301 IYIKLGVETR 310 >ref|YP_003674332.1| two component LuxR family transcriptional regulator [Methylotenera versatilis 301] gb|ADI29755.1| two component transcriptional regulator, LuxR family [Methylotenera versatilis 301] Length = 315 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 157/319 (49%), Positives = 207/319 (64%), Gaps = 24/319 (7%) Query: 10 VVLIVDDMPDNLAMLSDALDESGHIVLVATDGLAALERLDHITPDLILLDAMMPGIDGFE 69 +VLIVDD+PDNLA+L DALDESG VLVA +G AAL P +ILLDA+MPG+DGFE Sbjct: 13 IVLIVDDVPDNLAVLHDALDESGFTVLVANNGEAALVAAIEAQPGIILLDAIMPGMDGFE 72 Query: 70 TCRRIKQVKRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVARIGAHIKTA 129 CR++K H+P++FMTGL+E+EHVV F+ GG DY+TKPIR EV+ARI AH++T+ Sbjct: 73 VCRKLKADINTRHIPIIFMTGLTESEHVVAAFQAGGTDYITKPIRAIEVLARIDAHMQTS 132 Query: 130 RMMSQARGMLEHAAHAVIVLS-GNGLPLWQTSKASLWLEKYFPAGAGANATHKLPMMLQS 188 R+M+QARG L+ A + ++ NG +WQT A W+++YFP A+ K P + S Sbjct: 133 RLMNQARGALDAFGQAAVAITPSNGKVVWQTPLAREWMQRYFPEHY-AHYQSKTPPQVLS 191 Query: 189 WLNE-SLVRQRQGNGDIRPLVVTQGDCELRVALSAAGQGHEITLLLEEKKLAADIAASSS 247 W+ + SL R+ Q + + +V+ +G L + + +LL E+ AA I A + Sbjct: 192 WIEKVSLARETQADIPLLTIVLPRG--RLNFVPAELNDSEQWVILLREESDAAQIEALMT 249 Query: 248 IAAMRPTLGHDASANPPAGCFHLTPRESDVLLWLGKGKTNRDIAEILGMSPRTVNKHLEH 307 I F LT RES+VL W KGKT+RDI +ILG SPRTVNKHLEH Sbjct: 250 I-------------------FKLTSRESEVLYWATKGKTSRDIGDILGSSPRTVNKHLEH 290 Query: 308 IFVKLGVETRSAAAVLASS 326 +FVKLGVETR+AAA LASS Sbjct: 291 VFVKLGVETRTAAAALASS 309 >ref|YP_003050486.1| two component LuxR family transcriptional regulator [Methylovorus glucosetrophus SIP3-4] ref|YP_004039156.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gb|ACT49959.1| two component transcriptional regulator, LuxR family [Methylovorus glucosetrophus SIP3-4] gb|ADQ83920.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 314 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 155/318 (48%), Positives = 196/318 (61%), Gaps = 21/318 (6%) Query: 10 VVLIVDDMPDNLAMLSDALDESGHIVLVATDGLAALERLDHITPDLILLDAMMPGIDGFE 69 VVLIVDD+ DNLA+L DALDESG +VL+A DG AL PD+ILLDA+MPG+DGFE Sbjct: 13 VVLIVDDVLDNLAVLHDALDESGFMVLIAQDGATALATAAQAQPDVILLDAIMPGLDGFE 72 Query: 70 TCRRIKQVKRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVARIGAHIKTA 129 CRR+KQ H+PV+FMTGL+E+E++V GFE GG DYVTKPIR EV+ARI AH+KT+ Sbjct: 73 VCRRLKQELVTRHIPVIFMTGLTESENIVAGFEAGGTDYVTKPIRTAEVLARISAHLKTS 132 Query: 130 RMMSQARGMLEHAAHAVIVLS-GNGLPLWQTSKASLWLEKYFPAGAGANATHKLPMMLQS 188 R++ Q RG+L+ A I ++ G G +WQT A W+E+YF + +P L Sbjct: 133 RLVHQTRGVLDAFGQAAIAVTPGTGKIVWQTPLARQWMERYFGEETMPEYSATMPPELVR 192 Query: 189 WLNESLVRQRQGNGDIRPLVVTQGDCELRVALSAAGQGHEITLLLEEKKLAADIAASSSI 248 WL E L + L + QG L L + +LL E+ AA I A + Sbjct: 193 WLKE-LFEGGIAGLNKPTLTIPQGSGRLIFTLVEIDNDDQWVILLHEESDAAKIDALMTT 251 Query: 249 AAMRPTLGHDASANPPAGCFHLTPRESDVLLWLGKGKTNRDIAEILGMSPRTVNKHLEHI 308 F LT RES+VL W +GKTNRDI +ILG SPRT+NKHLEH+ Sbjct: 252 -------------------FKLTRRESEVLYWAMQGKTNRDIGDILGTSPRTINKHLEHV 292 Query: 309 FVKLGVETRSAAAVLASS 326 F KLGVETR+AA+ LA S Sbjct: 293 FTKLGVETRTAASALARS 310 >ref|YP_545870.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gb|ABE50029.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 311 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 150/316 (47%), Positives = 195/316 (61%), Gaps = 25/316 (7%) Query: 1 MISTTFDRHVVLIVDDMPDNLAMLSDALDESGHIVLVATDGLAALERLDHITPDLILLDA 60 M+ D VVLIVDD+PDNLA+L DALDESG++VLVA +G AL+R + PD+ILLDA Sbjct: 1 MMEVRKDTAVVLIVDDVPDNLAVLHDALDESGYMVLVANNGETALKRAEEARPDIILLDA 60 Query: 61 MMPGIDGFETCRRIKQVKRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVA 120 +MPG+DGFE C R+K H+PV+FMTGL+E+EHVV GF GG DYVTKPIR EV+A Sbjct: 61 IMPGLDGFEVCARLKANLNTQHIPVIFMTGLTESEHVVAGFAAGGTDYVTKPIRTAEVLA 120 Query: 121 RIGAHIKTARMMSQARGMLEHAAHAVI-VLSGNGLPLWQTSKASLWLEKYFPAGAGANAT 179 RI H++ +R M QARG L+ A I V+ +G +WQT A W+++YF A + + Sbjct: 121 RINTHLQASRQMHQARGALDAFGQAAIAVMPKSGRIVWQTPLARDWMQRYFSA-SDIDPV 179 Query: 180 HKLPMMLQSWLNESLVRQRQGNGDIRPLVVTQGDCELRVALSAAGQGHEITLLLEEKKLA 239 P+ + W L R+ + PL + QG L +L+ + ++L E+ A Sbjct: 180 TLTPLAVLKW----LANLREDGKESMPLTIVQGSGRLVFSLADLNAEEQWIIILREESDA 235 Query: 240 ADIAASSSIAAMRPTLGHDASANPPAGCFHLTPRESDVLLWLGKGKTNRDIAEILGMSPR 299 A I A+ T G LT RES+VL W KGKTNRDI +ILG SPR Sbjct: 236 A------QIEALMQTFG-------------LTQRESEVLYWAIKGKTNRDIGDILGTSPR 276 Query: 300 TVNKHLEHIFVKLGVE 315 TVNKH+EH+F KLGVE Sbjct: 277 TVNKHMEHVFAKLGVE 292