BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2747.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02166100.1| transcriptional regulator, LysR family protei... 285 7e-75 ref|YP_003267685.1| LysR family transcriptional regulator [Halia... 214 2e-53 ref|YP_001617786.1| LysR family transcriptional regulator [Soran... 170 2e-40 ref|YP_001380804.1| LysR family transcriptional regulator [Anaer... 163 2e-38 ref|YP_002133355.1| LysR family transcriptional regulator [Anaer... 156 4e-36 >ref|ZP_02166100.1| transcriptional regulator, LysR family protein [Hoeflea phototrophica DFL-43] gb|EDQ33703.1| transcriptional regulator, LysR family protein [Hoeflea phototrophica DFL-43] Length = 293 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 145/288 (50%), Positives = 202/288 (70%), Gaps = 1/288 (0%) Query: 1 METPISLDLLSTFVAVAELRSFSRAAEQLGVAKGTVSRAITALEQSLGTELLHRSTHRVD 60 M+TP L LL+TF AVAE +SFSRAA+ LGVAKGTVSR IT LE LG EL+HR+TH V Sbjct: 1 MKTPFDLRLLTTFAAVAEHQSFSRAAKALGVAKGTVSRTITQLEAELGIELVHRTTHHVA 60 Query: 61 LSTAGLALYHRAREPVDLLRRAVQSLPERDETPSGLLKILVVCDFAEILLPAALAAFSQR 120 LSTAG ALY R R + L+ +V +LPE ++ PSGLL+I +F ++LPA ++AFSQR Sbjct: 61 LSTAGAALYERTRGHLSALQTSVSNLPELEDEPSGLLRIAAAPEFGVLVLPAIISAFSQR 120 Query: 121 FPRVRFDVRVAGPFVDWGKENFDIGIAVVTGPLRDCNLKLRKLGRSTAGFYASPGYLSRR 180 FP VRFD+R++ D +E +D+ I V TG L+D LK+R++ R T FYA+P Y++R+ Sbjct: 121 FPNVRFDIRLSTDNADLVREGYDLAIRVATGSLKDSALKMRRIARGTTAFYAAPAYIARQ 180 Query: 181 GKPRNLEDVEHSWIVHPEVVRRYRMNPEHVSFQIDDFLIARELLISGAGIGLLPGFVARA 240 G+P+ L + HSW++H +V+ +++ + V + +DDF +AR+L+ G G+GLLP F+AR+ Sbjct: 181 GRPKRLLEKRHSWVLHAGIVQLLKLDADGVQYCVDDFFLARDLMREGVGVGLLPTFMARS 240 Query: 241 PLRAGLLERVPVKKEFQPLHGDWALLYSGNGPISKKVIAFRDFLCEVV 288 L+ GLLE V + +E L GD +LY +G KKV AFRDFL E + Sbjct: 241 DLKEGLLEEVSL-QEPHVLFGDLVVLYPSSGQTPKKVTAFRDFLVETL 287 >ref|YP_003267685.1| LysR family transcriptional regulator [Haliangium ochraceum DSM 14365] gb|ACY15792.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM 14365] Length = 297 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 133/285 (46%), Positives = 171/285 (60%), Gaps = 2/285 (0%) Query: 3 TPISLDLLSTFVAVAELRSFSRAAEQLGVAKGTVSRAITALEQSLGTELLHRSTHRVDLS 62 TP+ DLL+ F AVAE SFSRAA +LGV K TVSR+I LE+ LG L+HRSTH+V LS Sbjct: 4 TPVPYDLLAIFAAVAEESSFSRAAHKLGVGKSTVSRSIARLEEQLGAALIHRSTHKVALS 63 Query: 63 TAGLALYHRAREPVDLLRRAVQSLPERDETPSGLLKILVVCDFAEILLPAALAAFSQRFP 122 TAG ALY R + L +AV LPE PSG L++ V DF I+LPA LA FS R P Sbjct: 64 TAGTALYERVAPHLAALGQAVGKLPESAAEPSGELRMTVPHDFGAIVLPALLAQFSLRHP 123 Query: 123 RVRFDVRVAGPFVDWGKENFDIGIAVVTGPLRDCNLKLRKLGRSTAGFYASPGYLSRRGK 182 V FDVRV +D E D+ I L+D +L R+LG YA+P YL+RRG+ Sbjct: 124 EVSFDVRVTNRQIDLVSEGIDLAIRASPQRLKDSSLTARRLGDVLMACYAAPSYLARRGE 183 Query: 183 PRNLEDVEHSWIVHPEVVRRYRMNPE-HVSFQIDDFLIARELLISGAGIGLLPGFVARAP 241 PR+ D +H W V P ++ ++ E + DDFL+ R LL GAG+G LP FVA Sbjct: 184 PRSFGDPKHEWAVFPPLLALAQVPKEFRPRVRADDFLLLRALLAEGAGVGALPVFVAAPY 243 Query: 242 LRAGLLERVPVKKEFQPLHGDWALLYSGNGPISKKVIAFRDFLCE 286 + G L++V K+ F+ G + LL+ + S+KV AFRDF E Sbjct: 244 VAEGALQQVLPKELFRG-PGGYYLLFPTSAQRSRKVTAFRDFALE 287 >ref|YP_001617786.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] emb|CAN97306.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce 56'] Length = 327 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 115/296 (38%), Positives = 163/296 (55%), Gaps = 19/296 (6%) Query: 5 ISLDLLSTFVAVAELRSFSRAAEQLGVAKGTVSRAITALEQSLGTELLHRSTHRVDLSTA 64 + L+ LS F AVAE SF+ AA +LGV K TVSR + +LE SLG LL R+T V L+TA Sbjct: 25 MDLNHLSVFAAVAETASFTEAARRLGVPKSTVSRGVASLEASLGVRLLQRTTRSVALTTA 84 Query: 65 GLALYHRAREPVDLLRRAVQSLPERDETPSGLLKILVVCDFAEILLPAALAAFSQRFPRV 124 G AL R + L A++ LPE ++ PSG L++ DFA +L LAAF +R+PR+ Sbjct: 85 GHALVDRLGSRLKALTEAIEGLPELEDEPSGTLRLTATADFATEVLAEILAAFCRRYPRI 144 Query: 125 RFDVRVAGPFVDWGKENFDIGIAVVTGPLRDCNLKLRKLGRSTAGFYASPGYLSRRGKPR 184 ++ ++ VD KE +D +T RD L RK+G FYASP YL+ RG PR Sbjct: 145 TVEMHLSTQPVDLVKEGYDAAFRFLTKQPRDSTLVARKVGELHLQFYASPAYLAARGTPR 204 Query: 185 NLED---------VEHSWIVHPEVVR---RYRMNPEHVSFQIDDFLIARELLISGAGIGL 232 LED ++ S EV R R R + + ++D ARE++ +G GIGL Sbjct: 205 TLEDLAGHDGVALIKTSPFGRDEVSRAGARLR-----IRWLVNDGFFAREVVRNGGGIGL 259 Query: 233 LPGFVARAPLRAGLLERVPVKKEFQPLHGDWALLYSGNGPISKKVIAFRDFLCEVV 288 LP F+ + + AG L RV + + P G + + SG + +K +A RD + E + Sbjct: 260 LPTFLVQQDVLAGGLVRV-LPRWTAPTGGVFLVFPSGQH-LPRKTVALRDHVVEAL 313 >ref|YP_001380804.1| LysR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gb|ABS27820.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. Fw109-5] Length = 298 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 108/291 (37%), Positives = 159/291 (54%), Gaps = 10/291 (3%) Query: 5 ISLDLLSTFVAVAELRSFSRAAEQLGVAKGTVSRAITALEQSLGTELLHRSTHRVDLSTA 64 + L+LL+ F AVA SFS AA++LG+ K + SR + LE LG +LL R+T +V L+ Sbjct: 1 MDLNLLTLFEAVARTSSFSAAAKELGIPKSSASRGVARLEGELGAQLLFRTTRQVSLTAT 60 Query: 65 GLALYHRAREPVDLLRRAVQSLPERDETPSGLLKILVVCDFAEILLPAALAAFSQRFPRV 124 G ALY R + ++ A+ LPER+E PSG LK+ D + L L ++ R+P V Sbjct: 61 GTALYDRVTPLLRSVKAALGELPEREEAPSGTLKLTAPVDLGVLFLAEVLTRYTARYPAV 120 Query: 125 RFDVRVAGPFVDWGKENFDIGIAVVTGPLRDCNLKLRKLGRSTAGFYASPGYLSRRGKPR 184 D+ + G VD E FD+ + + L D +L +R+ YASP YLSRRG PR Sbjct: 121 SVDLHLTGRVVDLVAEGFDVALRAAS-KLEDSSLIVRRAAAVVFQLYASPLYLSRRGTPR 179 Query: 185 NLEDVE-HSWIVHPEVVRRYRMN-----PEHVSFQI-DDFLIARELLISGAGIGLLPGFV 237 ++++ H WIV ++ R+ P H + DD L R+ + SGAGIGLLP FV Sbjct: 180 TEDELDAHDWIVFRGGPQKLRITGPRPVPAHPPRIVCDDLLFVRDAVRSGAGIGLLPTFV 239 Query: 238 ARAPLRAGLLERVPVKKEFQPLHGDWALLYSGNGPISKKVIAFRDFLCEVV 288 A + AG L R+ + F+ G ++ + +KV AFRD + E++ Sbjct: 240 AEPDVLAGTLVRIVPR--FERSAGSMYIVTPSAKHVPRKVTAFRDLVLEML 288 >ref|YP_002133355.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K] gb|ACG72226.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K] Length = 300 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 107/293 (36%), Positives = 153/293 (52%), Gaps = 12/293 (4%) Query: 5 ISLDLLSTFVAVAELRSFSRAAEQLGVAKGTVSRAITALEQSLGTELLHRSTHRVDLSTA 64 + LDLL F AVA SFS AA +L + K + SRA+ LE+ LG +LL R+T +V LS A Sbjct: 1 MDLDLLRVFAAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAA 60 Query: 65 GLALYHRAREPVDLLRRAVQSLPERDETPSGLLKILVVCDFAEILLPAALAAFSQRFPRV 124 G LY R + L A+ LPER+E PSGLL++ D L A ++ R+P V Sbjct: 61 GTGLYDRIAPLLHGLESALGELPEREEEPSGLLRVTAPVDIGIFFLAELTARYTLRYPAV 120 Query: 125 RFDVRVAGPFVDWGKENFDIGIAVVTGPLRDCNLKLRKLGRSTAGFYASPGYLSRRGKPR 184 ++ ++ VD E FD+ + V G L+D L RK +ASP YL+RRG PR Sbjct: 121 SVELDLSSRLVDLVAEGFDVALRVAPG-LKDSTLVARKASPVQLQLFASPLYLARRGTPR 179 Query: 185 NLEDVE-HSWIVHPEVVRRYRMNPEHVSFQID--------DFLIARELLISGAGIGLLPG 235 ++E H W+ R+ R+ + ++ + L RE + +GAGIGLLP Sbjct: 180 TEAELEAHDWVTFGTQARKLRLEGARGTVEVTPRSRILCPELLFVREAMRAGAGIGLLPS 239 Query: 236 FVARAPLRAGLLERVPVKKEFQPLHGDWALLYSGNGPISKKVIAFRDFLCEVV 288 F+A L AG L RV + G+ ++ + +KV AFRD + E+V Sbjct: 240 FMAEQDLAAGTLVRVLPR--LVRTGGNLYVVTPATRHVPRKVSAFRDLVLELV 290