BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2739.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776046.1| cobalamin biosynthesis protein [Herbaspirill... 488 e-136 ref|YP_001099278.1| putative threonine-phosphate decarboxylase (... 390 e-106 ref|YP_001352789.1| cobalamin biosynthetic protein CobC [Janthin... 362 6e-98 ref|YP_004473945.1| L-threonine-O-3-phosphate decarboxylase [Pse... 287 1e-75 gb|EGH66859.1| threonine-phosphate decarboxylase [Pseudomonas sy... 287 2e-75 >ref|YP_003776046.1| cobalamin biosynthesis protein [Herbaspirillum seropedicae SmR1] gb|ADJ64138.1| cobalamin biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 268/336 (79%), Positives = 291/336 (86%) Query: 1 MLEHGGNLNDAARHYGRPRIDWLDLSTGINPRPYPAPAPAPDAWHRLPEPSHALEHAACD 60 MLEHGGNLNDAARHYGR R WLD+STGINP+PYPAPAP DAWHRLPEPS ALE AACD Sbjct: 1 MLEHGGNLNDAARHYGRARAQWLDVSTGINPQPYPAPAPLADAWHRLPEPSAALEQAACD 60 Query: 61 YYLAPHMLAVAGTQAAIQALPQVRLRQDGRPAQVVVAAPIYAEHAHCWRRAGHQVREVSY 120 YY AP MLAVAGTQAAIQALPQ+RLR+DGRPAQVVVAAPIYAEHAHCWRR GH+V EV Y Sbjct: 61 YYGAPRMLAVAGTQAAIQALPQLRLRRDGRPAQVVVAAPIYAEHAHCWRRCGHEVSEVPY 120 Query: 121 ADLEEAVSTPGCEVLVLCNPNNPTGAMVAPEDVLRWAALLAARGGWLVVDEAFGDTVQGR 180 L++AV +P C+VLVLCNPNNPTGA+V PE +LRWAA LA RGGWLVVDEAFGDT+ Sbjct: 121 EALDQAVQSPSCQVLVLCNPNNPTGALVEPERLLRWAAQLAERGGWLVVDEAFGDTLTHY 180 Query: 181 SVAAHSDQPGLIVLRSVGKFFGLAGLRLGFVGAAPAVLEALADWLGPWSISGPAQQIGSA 240 SVAAH+ Q GLIVLRSVGKFFGLAGLRLGFV AAPA+L LADWLGPW+ISGPAQQIG A Sbjct: 181 SVAAHTPQTGLIVLRSVGKFFGLAGLRLGFVAAAPALLAELADWLGPWTISGPAQQIGCA 240 Query: 241 ALCDRPWQAATLQTLLAEGERLHALLAQHGIRAGGTALFQWWPEPRAQAFHEAMARAGIW 300 AL DR WQA T Q L A+G+RL LLA+HGI A GTALFQWWPEP+AQAFH MA AG+W Sbjct: 241 ALRDRDWQAQTRQRLQAQGQRLQQLLARHGIAAQGTALFQWWPEPQAQAFHACMAEAGVW 300 Query: 301 VRLFTRGAGGIRLGLPPDEAGWSRLQDALNTWSQRG 336 VRLFTRGAGGIR+GLPPD+AGW RL +AL TWSQRG Sbjct: 301 VRLFTRGAGGIRIGLPPDDAGWQRLHEALTTWSQRG 336 >ref|YP_001099278.1| putative threonine-phosphate decarboxylase (L-threonine-O-3-phosphate decarboxylase) [Herminiimonas arsenicoxydans] emb|CAL61151.1| putative threonine-phosphate decarboxylase (L-threonine-O-3-phosphate decarboxylase) [Herminiimonas arsenicoxydans] Length = 332 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 215/333 (64%), Positives = 252/333 (75%), Gaps = 10/333 (3%) Query: 1 MLEHGGNLNDAARHYGRPRIDWLDLSTGINPRPYPAPAPAPDAWHRLPEPSHALEHAACD 60 MLEHGGNL+DA YGRPR +WLDLSTGINP+ YP P APDAWHRLPEPS L AA + Sbjct: 1 MLEHGGNLHDAVLRYGRPREEWLDLSTGINPQAYPVPQLAPDAWHRLPEPSTTLLEAAQN 60 Query: 61 YYLAPHMLAVAGTQAAIQALPQVRLRQDGRPAQVVVAAPIYAEHAHCWRRAGHQVREVSY 120 YY AP +L VAGTQAAIQALP++R R ++VV+AAP YAEH++ WR+AGH VREV Y Sbjct: 61 YYGAPQLLPVAGTQAAIQALPRLRAR-----SRVVIAAPSYAEHSYQWRQAGHDVREVRY 115 Query: 121 ADLEEAVSTPGCEVLVLCNPNNPTGAMVAPEDVLRWAALLAARGGWLVVDEAFGDTVQGR 180 LE A++T C+V+ LCNPNNPTG +APE +LRWA LAARGGWL+VDEAFGDT + Sbjct: 116 EQLEAALNT--CDVMSLCNPNNPTGEKIAPETLLRWAEQLAARGGWLIVDEAFGDTAPAQ 173 Query: 181 SVAAHSDQPGLIVLRSVGKFFGLAGLRLGFVGAAPAVLEALADWLGPWSISGPAQQIGSA 240 SVAA + Q GLIV RSVGKFFGLAGLRLGFV A +L+ LAD LGPW++SGPAQQIGSA Sbjct: 174 SVAAFTSQAGLIVFRSVGKFFGLAGLRLGFVAAHADLLKQLADLLGPWTVSGPAQQIGSA 233 Query: 241 ALCDRPWQAATLQTLLAEGERLHALLAQHGIRAGGTALFQWWPEPRAQAFHEAMARAGIW 300 AL DR WQ A L G+ L LLA HGI + GT L+Q+WPE RA AF E MA+ GIW Sbjct: 234 ALSDRAWQQAMRSQLQESGKCLQQLLASHGIASNGTPLYQYWPEARAAAFAEHMAQHGIW 293 Query: 301 VRLFTRGAGGIRLGLPPDEAGWSRLQDALNTWS 333 VR+F+ G+R+GLP DE GW RLQ AL+ W+ Sbjct: 294 VRMFSH---GVRIGLPADEKGWHRLQHALSAWA 323 >ref|YP_001352789.1| cobalamin biosynthetic protein CobC [Janthinobacterium sp. Marseille] gb|ABR89861.1| cobalamin biosynthetic protein CobC [Janthinobacterium sp. Marseille] Length = 325 Score = 362 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 199/329 (60%), Positives = 243/329 (73%), Gaps = 10/329 (3%) Query: 1 MLEHGGNLNDAARHYGRPRIDWLDLSTGINPRPYPAPAPAPDAWHRLPEPSHALEHAACD 60 MLEHGGNL+DA + YGRPR +WLDLSTGINP+ YP P DAWHRLPEPS AL AA Sbjct: 1 MLEHGGNLHDAIQRYGRPRAEWLDLSTGINPQAYPVPPLTADAWHRLPEPSTALLEAAQA 60 Query: 61 YYLAPHMLAVAGTQAAIQALPQVRLRQDGRPAQVVVAAPIYAEHAHCWRRAGHQVREVSY 120 YY AP +L VAGTQAAIQALP++R ++VV+AAP YAEH++ WR+AGH+V EV+Y Sbjct: 61 YYGAPQLLPVAGTQAAIQALPRLRAH-----SRVVIAAPSYAEHSYQWRQAGHEVHEVAY 115 Query: 121 ADLEEAVSTPGCEVLVLCNPNNPTGAMVAPEDVLRWAALLAARGGWLVVDEAFGDTVQGR 180 L A C+VL +CNPNNPTG ++P+ +L W+A LAARGGWL+VDEAFGDT+ + Sbjct: 116 DRL--AAEIDHCDVLSICNPNNPTGEKISPQLLLEWSARLAARGGWLLVDEAFGDTMPEQ 173 Query: 181 SVAAHSDQPGLIVLRSVGKFFGLAGLRLGFVGAAPAVLEALADWLGPWSISGPAQQIGSA 240 SVAA++ Q GLIV RSVGKFFGLAGLRLGFV A +L+ LAD LGPW++SGPAQQIG+A Sbjct: 174 SVAAYTAQKGLIVFRSVGKFFGLAGLRLGFVAAHANLLQELADLLGPWTVSGPAQQIGAA 233 Query: 241 ALCDRPWQAATLQTLLAEGERLHALLAQHGIRAGGTALFQWWPEPRAQAFHEAMARAGIW 300 AL D WQ + L +RL +L HGI++ GT LFQ+WP A F MA+ GIW Sbjct: 234 ALADTVWQQQMRRQLQDSAKRLQQMLQTHGIQSNGTELFQYWPSSNAVGFAAHMAQHGIW 293 Query: 301 VRLFTRGAGGIRLGLPPDEAGWSRLQDAL 329 +R+F+ G+RLGLPPD+AGW RLQ AL Sbjct: 294 IRIFSH---GVRLGLPPDDAGWLRLQQAL 319 >ref|YP_004473945.1| L-threonine-O-3-phosphate decarboxylase [Pseudomonas fulva 12-X] gb|AEF21851.1| L-threonine-O-3-phosphate decarboxylase [Pseudomonas fulva 12-X] Length = 330 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 171/337 (50%), Positives = 213/337 (63%), Gaps = 9/337 (2%) Query: 1 MLEHGGNLNDAARHYGRPRIDWLDLSTGINPRPYPAPAPAPDAWHRLPEPSHALEHAACD 60 MLEHGG L AA YG DWLDLSTG+ P P P AW+RLPE LE AAC Sbjct: 1 MLEHGGRLRKAALRYGIALGDWLDLSTGVAPYGLPLPEIPAQAWNRLPEQDDGLETAACA 60 Query: 61 YYLAPHMLAVAGTQAAIQALPQVRLRQDGRPAQVVVAAPIYAEHAHCWRRAGHQVREVSY 120 YY A +L VAG+QAAIQ LP++R R A+V + +P YAEHA W+R GH+V E+S Sbjct: 61 YYGAADLLPVAGSQAAIQCLPRLR-----REARVGIVSPAYAEHAAAWQREGHRVLEISE 115 Query: 121 ADLEEAVSTPGCEVLVLCNPNNPTGAMVAPEDVLRWAALLAARGGWLVVDEAFGDTVQGR 180 A + A+ +VL+L NPNNPTG +PE + W A LA RGGWL+VDEAF D + Sbjct: 116 AGVNRALER--IDVLLLVNPNNPTGRRFSPEQLYAWHARLAERGGWLIVDEAFVDCTPEQ 173 Query: 181 SVAAHSDQPGLIVLRSVGKFFGLAGLRLGFVGAAPAVLEALADWLGPWSISGPAQQIGSA 240 S+AAH+ PGLIVLRS GKFFG+AG RLGFV A +L+ L + LGPW+ISGP + + + Sbjct: 174 SLAAHAQLPGLIVLRSFGKFFGMAGARLGFVLAERTLLDELEEMLGPWTISGPTRWLATR 233 Query: 241 ALCDRPWQAATLQTLLAEGERLHALLAQHGIR-AGGTALFQWWPEPRAQAFHEAMARAGI 299 L D+ Q Q L+++G+RL LL + G+ GG A+FQW A HE +A GI Sbjct: 234 MLEDKGAQQFQRQRLISDGQRLAGLLREQGLTPTGGCAMFQWLASEHAALLHEFLACNGI 293 Query: 300 WVRLFTRGAGGIRLGLPPDEAGWSRLQDALNTWSQRG 336 RLF R A IR GLPPDEAGW RL AL +++ Sbjct: 294 LTRLFERPA-SIRFGLPPDEAGWQRLAAALQVFAEEA 329 >gb|EGH66859.1| threonine-phosphate decarboxylase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 334 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 177/333 (53%), Positives = 218/333 (65%), Gaps = 11/333 (3%) Query: 1 MLEHGGNLNDAARHYGRPRIDWLDLSTGINPRPYPAPAPAPDAWHRLPEPSHALEHAACD 60 MLEHGG L AA+HYG + DWLDLSTGI P P+P P AW RLPE LE AAC Sbjct: 1 MLEHGGRLRAAAQHYGIDQADWLDLSTGIAPWPWPIPDIPMRAWARLPETDDGLEAAACA 60 Query: 61 YYLAPHMLAVAGTQAAIQALPQVRLRQDGRPAQVVVAAPIYAEHAHCWRRAGHQVREVSY 120 YY P +L V+G+QAAIQALP R+R GR V V +P YAEHAH WR++G+ VREV Sbjct: 61 YYGVPQLLPVSGSQAAIQALP--RVRSGGR---VGVLSPCYAEHAHAWRKSGYVVREVGE 115 Query: 121 ADLEEAVSTPGCEVLVLCNPNNPTGAMVAPEDVLRWAALLAARGGWLVVDEAFGDTVQGR 180 ++E + + +VLV+ NPNNPTG ++ E +L W A LA RGGWLVVDEAF D G Sbjct: 116 QEVEYFLDS--LDVLVVVNPNNPTGLHLSTERLLEWHARLAERGGWLVVDEAFMDNTPGL 173 Query: 181 SVAAHSDQPGLIVLRSVGKFFGLAGLRLGFVGAAPAVLEALADWLGPWSISGPAQQIGSA 240 S+AA + + GLIVLRS GKFFGLAG+RLGFV A P +L+ LA +GPWS+SGP + IG A Sbjct: 174 SLAAETWRIGLIVLRSFGKFFGLAGVRLGFVLAEPVLLKMLAQEIGPWSVSGPTRIIGQA 233 Query: 241 ALCDRPWQAATLQTLLAEGERLHALLAQHGIRA-GGTALFQWWPEPRAQAFHEAMARAGI 299 L D P QA + +RL ALL Q+G+ GG ALFQW AQ+ + A+ G+ Sbjct: 234 CLSDLPGQALQRERSDQACDRLVALLEQYGLTPDGGCALFQWLVTAEAQSLYAFCAQRGV 293 Query: 300 WVRLF---TRGAGGIRLGLPPDEAGWSRLQDAL 329 +RLF T +G +R GLP DEA W RL + L Sbjct: 294 LLRLFVGDTPESGSLRFGLPRDEADWQRLHNVL 326