BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2738.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776047.1| cobalamin biosynthesis CobD/CbiB [Herbaspiri... 397 e-108 ref|YP_001352788.1| cobalamin biosynthesis protein CobD [Janthin... 350 2e-94 ref|YP_001099277.1| putative cobalamin biosynthesis protein [Her... 345 6e-93 ref|ZP_03270781.1| cobalamin biosynthesis protein CobD [Burkhold... 311 1e-82 ref|YP_003604329.1| cobalamin biosynthesis protein CobD [Burkhol... 310 2e-82 >ref|YP_003776047.1| cobalamin biosynthesis CobD/CbiB [Herbaspirillum seropedicae SmR1] gb|ADJ64139.1| cobalamin biosynthesis (CobD/CbiB) protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 254/307 (82%), Positives = 271/307 (88%) Query: 15 MLSGLSWPALAALMALGIALDLLLGEARRWHPLVGFGNLAKRIEGTLNHAPALRLRGVLA 74 ML GLSWP LA LMALG+ALDL LGEARRWHPLVGFG LA+RIE LN AP LRLRGVLA Sbjct: 1 MLIGLSWPWLAVLMALGLALDLRLGEARRWHPLVGFGRLAQRIEAALNRAPGLRLRGVLA 60 Query: 75 WCLAVLPPVLACAWIIAVLPGWLAALAHAALLYFCIGLRSLREHTLPIAQALAQGDLPLA 134 W LAVLPPVL AW+IA P WLAAL HA LLYFCIGLRSLREHTLPIAQAL G+L A Sbjct: 61 WALAVLPPVLLAAWLIAQTPWWLAALLHAGLLYFCIGLRSLREHTLPIAQALGAGELAQA 120 Query: 135 RRLTSYIVSRDTRESGEAELAKAGVESLLENGNDAVFGTLFWFLVAGGPGALLFRLANTL 194 RRLT++IVSRDTR + E ELAKAGVESLLENGNDAVFGTLFWFL+AGGPGALLFRL+NTL Sbjct: 121 RRLTAWIVSRDTRSASEQELAKAGVESLLENGNDAVFGTLFWFLLAGGPGALLFRLSNTL 180 Query: 195 DAMWGYRNARFLFFGWSAARIDDGLNWLPARLTAFSYAWLGQRRQALDCWKAQAPAWSSP 254 DAMWGYRNARFL+FGW+AARIDD LNW PARLTA SYA LGQRRQAL CWK QAPAWSSP Sbjct: 181 DAMWGYRNARFLYFGWAAARIDDALNWCPARLTALSYAVLGQRRQALACWKEQAPAWSSP 240 Query: 255 NAGPVMAAGAGALGLALGGPAIYDGEVEERPPLGRGLPPQGPDIVRAWRLVAMSTALWVA 314 NAGPVMAAGAGALGLALGG A+YDGEVE+RPPLG G+ PQG DIVRAWRLVAMS ALW+A Sbjct: 241 NAGPVMAAGAGALGLALGGAAVYDGEVEQRPPLGCGVAPQGADIVRAWRLVAMSAALWMA 300 Query: 315 VVCALAV 321 VV A+A+ Sbjct: 301 VVAAVAL 307 >ref|YP_001352788.1| cobalamin biosynthesis protein CobD [Janthinobacterium sp. Marseille] gb|ABR88542.1| cobalamin biosynthesis protein CobD [Janthinobacterium sp. Marseille] Length = 313 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 206/312 (66%), Positives = 234/312 (75%), Gaps = 5/312 (1%) Query: 15 MLSGLSWPALAALMALGIALDLLLGEARRWHPLVGFGNLAKRIEGTLNHAPALRLRGVLA 74 ML GLS A+A LM LG+ LD+ LGEA RWHPLVGFGNLA RIE N + RG LA Sbjct: 1 MLFGLSCGAIAILMLLGVLLDMRLGEATRWHPLVGFGNLAIRIEKKFNTGGSRIARGALA 60 Query: 75 WCLAVLPPVLACAWIIAVLPGWLAAL----AHAALLYFCIGLRSLREHTLPIAQALAQGD 130 W L V+ P +A AW++ AL HA LLYF +GLRSLR+HTLPIA AL GD Sbjct: 61 WIL-VVAPFVAVAWLLTFWVAQFDALFALGVHALLLYFSLGLRSLRDHTLPIAHALMDGD 119 Query: 131 LPLARRLTSYIVSRDTRESGEAELAKAGVESLLENGNDAVFGTLFWFLVAGGPGALLFRL 190 L AR LT+ IVSRDT ++ EA+LAKAGVESLLENGNDAVFGTLFWF VAGGPG +LFRL Sbjct: 120 LAQARLLTARIVSRDTTQAQEADLAKAGVESLLENGNDAVFGTLFWFAVAGGPGVVLFRL 179 Query: 191 ANTLDAMWGYRNARFLFFGWSAARIDDGLNWLPARLTAFSYAWLGQRRQALDCWKAQAPA 250 ANTLDAMWGYR RF FG AARIDD LN++PARLTA SYA LG RQA CW+AQAPA Sbjct: 180 ANTLDAMWGYRTQRFNEFGRVAARIDDVLNFIPARLTALSYAVLGNTRQAWRCWRAQAPA 239 Query: 251 WSSPNAGPVMAAGAGALGLALGGPAIYDGEVEERPPLGRGLPPQGPDIVRAWRLVAMSTA 310 WSSPNAGPVM+AGAGALG++LGG AIYDGE+E+RPPLG G G DI RAWRLV ++T Sbjct: 240 WSSPNAGPVMSAGAGALGISLGGAAIYDGELEQRPPLGSGPLAAGKDIARAWRLVRLTTV 299 Query: 311 LWVAVVCALAVL 322 LW+ ++C V Sbjct: 300 LWLLLICIAGVF 311 >ref|YP_001099277.1| putative cobalamin biosynthesis protein [Herminiimonas arsenicoxydans] emb|CAL61150.1| putative cobalamin biosynthesis protein CbiB [Herminiimonas arsenicoxydans] Length = 304 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 200/302 (66%), Positives = 230/302 (76%), Gaps = 11/302 (3%) Query: 28 MALGIALDLLLGEARRWHPLVGFGNLAKRIEGTLNHAPALRLRGVLAWCLAVLPPVLACA 87 M LG+ LD+ LGEA RWHPLVGFGNLA RIE LN + +RG +AW L VLP VL A Sbjct: 1 MMLGVLLDMRLGEATRWHPLVGFGNLAIRIEKKLNTGGSRIVRGAVAWMLIVLPLVLV-A 59 Query: 88 WIIAVLPGWLAAL-------AHAALLYFCIGLRSLREHTLPIAQALAQGDLPLARRLTSY 140 W++ WLA HA LLYF +GLRSLR+HTLPIA AL GDL AR LT+ Sbjct: 60 WLLTF---WLAQFDLLLAFGVHALLLYFGLGLRSLRDHTLPIAHALMDGDLSQARLLTAR 116 Query: 141 IVSRDTRESGEAELAKAGVESLLENGNDAVFGTLFWFLVAGGPGALLFRLANTLDAMWGY 200 IVSRDT ++ EA+LAKAGVESLLENGNDAVFGTLFWF++AGGPG +LFR ANTLDAMWGY Sbjct: 117 IVSRDTTQAQEADLAKAGVESLLENGNDAVFGTLFWFVLAGGPGVVLFRFANTLDAMWGY 176 Query: 201 RNARFLFFGWSAARIDDGLNWLPARLTAFSYAWLGQRRQALDCWKAQAPAWSSPNAGPVM 260 R RF FG AARIDD LN++PARLTA SYA LG +QA CW+ QAPAWSSPNAGPVM Sbjct: 177 RTQRFNEFGRVAARIDDVLNFIPARLTALSYAVLGNAKQAWQCWRVQAPAWSSPNAGPVM 236 Query: 261 AAGAGALGLALGGPAIYDGEVEERPPLGRGLPPQGPDIVRAWRLVAMSTALWVAVVCALA 320 +AGAGALG++LGG AIYDGEVE+RPPLG G G DI RAWRLV ++T LW+A++C A Sbjct: 237 SAGAGALGISLGGAAIYDGEVEQRPPLGIGPAAAGKDIARAWRLVVLTTVLWLALICIAA 296 Query: 321 VL 322 V+ Sbjct: 297 VI 298 >ref|ZP_03270781.1| cobalamin biosynthesis protein CobD [Burkholderia sp. H160] gb|EDZ97632.1| cobalamin biosynthesis protein CobD [Burkholderia sp. H160] Length = 313 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 181/294 (61%), Positives = 213/294 (72%) Query: 19 LSWPALAALMALGIALDLLLGEARRWHPLVGFGNLAKRIEGTLNHAPALRLRGVLAWCLA 78 L+ P +AAL G+A+D GE R HPLVGFGN A RIE NH LRL+G+ AW LA Sbjct: 4 LTMPLIAALATAGVAVDRWFGEPSRAHPLVGFGNWAARIEARFNHDRRLRLKGLFAWALA 63 Query: 79 VLPPVLACAWIIAVLPGWLAALAHAALLYFCIGLRSLREHTLPIAQALAQGDLPLARRLT 138 VLPPVL W++AVLP + A H ALL+F +G RSLR+H PIA+AL Q DL AR+LT Sbjct: 64 VLPPVLIAWWLVAVLPLFAACALHVALLWFALGARSLRDHIAPIARALGQHDLATARQLT 123 Query: 139 SYIVSRDTRESGEAELAKAGVESLLENGNDAVFGTLFWFLVAGGPGALLFRLANTLDAMW 198 + IVSRDT +S EA LA+A VES LENGNDA+FG LFWF +AGGPGAL FRLANTLDAMW Sbjct: 124 ARIVSRDTAQSDEAALARAAVESALENGNDAIFGALFWFALAGGPGALGFRLANTLDAMW 183 Query: 199 GYRNARFLFFGWSAARIDDGLNWLPARLTAFSYAWLGQRRQALDCWKAQAPAWSSPNAGP 258 GYR R+L FGW+AARIDD LNW+PARLTA SYA LG A CW+ QAP W SPNAGP Sbjct: 184 GYRTPRYLRFGWAAARIDDVLNWIPARLTATSYALLGDTLTAWRCWREQAPRWDSPNAGP 243 Query: 259 VMAAGAGALGLALGGPAIYDGEVEERPPLGRGLPPQGPDIVRAWRLVAMSTALW 312 VMAAGAG+L + +GGPA+Y G +E+RP LG G P + + A LV + LW Sbjct: 244 VMAAGAGSLNVLIGGPAVYHGTLEQRPTLGFGHPAEARHVGAALMLVERTVILW 297 >ref|YP_003604329.1| cobalamin biosynthesis protein CobD [Burkholderia sp. CCGE1002] gb|ADG14818.1| cobalamin biosynthesis protein CobD [Burkholderia sp. CCGE1002] Length = 313 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 180/294 (61%), Positives = 211/294 (71%) Query: 19 LSWPALAALMALGIALDLLLGEARRWHPLVGFGNLAKRIEGTLNHAPALRLRGVLAWCLA 78 L+ P +A L G+A+D GE R HPLVGFGN A RIE NH LRL+G+LAW LA Sbjct: 4 LTMPLIATLAVAGVAVDRWFGEPSRRHPLVGFGNWAARIEARFNHDRRLRLKGLLAWALA 63 Query: 79 VLPPVLACAWIIAVLPGWLAALAHAALLYFCIGLRSLREHTLPIAQALAQGDLPLARRLT 138 VLPPVL W++AVLP + A H ALL+F +G RSLR+H PIA+AL Q DL AR LT Sbjct: 64 VLPPVLIAWWLVAVLPLFAACALHVALLWFALGARSLRDHIAPIARALGQRDLATARELT 123 Query: 139 SYIVSRDTRESGEAELAKAGVESLLENGNDAVFGTLFWFLVAGGPGALLFRLANTLDAMW 198 + IVSRDT +S EA LA+A VES LENGNDA+FG LFWF +AGGPGAL FRLANTLDAMW Sbjct: 124 ARIVSRDTSQSDEAALARAAVESALENGNDAIFGALFWFALAGGPGALGFRLANTLDAMW 183 Query: 199 GYRNARFLFFGWSAARIDDGLNWLPARLTAFSYAWLGQRRQALDCWKAQAPAWSSPNAGP 258 GYR R+L FGW+AARIDD LNW+PARLTA SYA LG A CW+ QAP W SPNAGP Sbjct: 184 GYRTPRYLRFGWAAARIDDVLNWIPARLTATSYALLGDTLAAWRCWREQAPRWDSPNAGP 243 Query: 259 VMAAGAGALGLALGGPAIYDGEVEERPPLGRGLPPQGPDIVRAWRLVAMSTALW 312 VMA+GAG+L + +GGPA+Y G +E RP LG G P + + A LV + LW Sbjct: 244 VMASGAGSLNVLIGGPAVYHGTLEHRPTLGFGHPAEARHVGAALMLVERTVILW 297