BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2735.p (444 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776050.1| cobyrinic acid A,c-diamide synthase [Herbasp... 736 0.0 ref|ZP_08783019.1| CobB/CobQ domain protein glutamine amidotrans... 456 e-126 ref|ZP_03698505.1| CobB/CobQ domain protein glutamine amidotrans... 434 e-119 ref|YP_004847059.1| CobB/CobQ domain containing protein glutamin... 432 e-119 ref|NP_901226.1| cobyrinic acid a,c-diamide synthase [Chromobact... 429 e-118 >ref|YP_003776050.1| cobyrinic acid A,c-diamide synthase [Herbaspirillum seropedicae SmR1] gb|ADJ64142.1| cobyrinic acid A,c-diamide synthase protein [Herbaspirillum seropedicae SmR1] Length = 444 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 390/444 (87%), Positives = 415/444 (93%) Query: 1 MSAPQYRCPALFISAPASGHGKTTITAALARLYRHQGKRVRVFKTGPDFLDPMVLQQASG 60 MS Y CPALFISAPASGHGKTTITAALARLYR QGKRV VFKTGPDFLDPMVL+QASG Sbjct: 1 MSEASYSCPALFISAPASGHGKTTITAALARLYRRQGKRVTVFKTGPDFLDPMVLEQASG 60 Query: 61 QPVANLDLWLGGEDHCRRQVALAAAESDVLLVEGVMGLFDGEPSSADLAQLLGIPIVAVI 120 QPVANLDLW+ G+DH RRQVALAAA+SDVLLVEGVMGL+DGEPSSADLAQLLGIP+VAVI Sbjct: 61 QPVANLDLWMAGQDHVRRQVALAAAQSDVLLVEGVMGLYDGEPSSADLAQLLGIPVVAVI 120 Query: 121 NARGMGQTIGALAQGLLAYRPELKFAGVLANGVASPRHAQMLRQGLQNARPSVPLLTGLQ 180 NARGMGQTIGALAQGLLAYRPELKFAGVLANGVASPRHAQMLRQGLQ+ARPSVPLL+GLQ Sbjct: 121 NARGMGQTIGALAQGLLAYRPELKFAGVLANGVASPRHAQMLRQGLQHARPSVPLLSGLQ 180 Query: 181 RDMQFALPERHLGLVAAPEIADLDARLDAVAERMSATSLANLPPEVDFGTPPPERAFPRL 240 RD+QFALPERHLGLVAAPEIADLDARLDAVAERMSATSLANLP VDFGTPP ER+FPRL Sbjct: 181 RDLQFALPERHLGLVAAPEIADLDARLDAVAERMSATSLANLPAPVDFGTPPAERSFPRL 240 Query: 241 LEGKTIAVARDLAFSFIYPANLDLLALMGASVTFFSPLADEAVPECDAVWLPGGYPELHL 300 LEGKTIAVARDLAFSFIY ANLDLL MGA++ FFSPLAD+A+P CDAVWLPGGYPEL+L Sbjct: 241 LEGKTIAVARDLAFSFIYTANLDLLQQMGATLAFFSPLADQALPPCDAVWLPGGYPELYL 300 Query: 301 PALQAAQRTQSSLRAHAGAGKPLYAECGGMLFLLETVIAGDGSSGQLCGILPGQATVQPR 360 LQ AQRTQSSLR HA AGKPLYAECGGMLFLLET+I DG+SG++CG+LPGQA VQPR Sbjct: 301 QTLQDAQRTQSSLREHAAAGKPLYAECGGMLFLLETIIGMDGASGRMCGVLPGQAAVQPR 360 Query: 361 LQGLGYQTLQLNLPGAVGEHLRCHTFHYSRAVVGAEFIARGERLFDSSEGEVVYRRGKVT 420 LQGLGYQTL L LPGAVGEHLRCHTFHYSRAVVGAEF+ARGERLFDSSEGEVVYRR ++T Sbjct: 361 LQGLGYQTLSLKLPGAVGEHLRCHTFHYSRAVVGAEFMARGERLFDSSEGEVVYRRQQIT 420 Query: 421 ASYLHAYFRSAPRTVAALLGGAAS 444 ASYLHA+FRSAPRTVAAL GGA + Sbjct: 421 ASYLHAWFRSAPRTVAALFGGATA 444 >ref|ZP_08783019.1| CobB/CobQ domain protein glutamine amidotransferase [Methylobacter tundripaludum SV96] gb|EGW19664.1| CobB/CobQ domain protein glutamine amidotransferase [Methylobacter tundripaludum SV96] Length = 432 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 238/439 (54%), Positives = 312/439 (71%), Gaps = 9/439 (2%) Query: 1 MSAPQYRCPALFISAPASGHGKTTITAALARLYRHQGKRVRVFKTGPDFLDPMVLQQASG 60 M+ CPALFI+AP S HGKTTITAALAR + QG++VRVFK+GPDFLDPM+L++A G Sbjct: 1 MTLSTIHCPALFITAPGSNHGKTTITAALARYHVEQGRKVRVFKSGPDFLDPMILERACG 60 Query: 61 QPVANLDLWLGGEDHCRRQVALAAAESDVLLVEGVMGLFDGEPSSADLAQLLGIPIVAVI 120 PV LDLW+ GE CRR + AA E+D++L+EGVMGLFDGEP SAD+A+L +P++AVI Sbjct: 61 LPVYQLDLWMMGETECRRLLYEAALEADLILIEGVMGLFDGEPCSADVAELFSVPVMAVI 120 Query: 121 NARGMGQTIGALAQGLLAYRPELKFAGVLANGVASPRHAQMLRQGLQNARPSVPLLTGLQ 180 +A G QT+GALA GL YRP LKF+GVLAN +ASPRH +M+ QG+ P + G+ Sbjct: 121 DATGAAQTLGALAYGLANYRPGLKFSGVLANNIASPRHNEMIMQGMP---PDLCYFGGIP 177 Query: 181 RDMQFALPERHLGLVAAPEIADLDARLDAVAERMSATSLANLPPEVDFGTPPPERAFPRL 240 RD +F LPERHLGLV A E+ DL++R+ A A ++ T LAN P V+F T P + P+L Sbjct: 178 RDNRFVLPERHLGLVQAEEVLDLESRMSAAATAIAVTGLANFPESVEF-TAPEQETPPQL 236 Query: 241 LEGKTIAVARDLAFSFIYPANLDLLALMGASVTFFSPLADEAVPECDAVWLPGGYPELHL 300 L G I VARD AFSFIY ANLD+L MGA++ FFSPLAD+A+P+ D+++LPGGYPELHL Sbjct: 237 LSGIRIGVARDTAFSFIYAANLDVLRTMGATLIFFSPLADKALPDVDSIYLPGGYPELHL 296 Query: 301 PALQAAQRTQSSLRAHAGAGKPLYAECGGMLFLLETVIAGDGSSGQLCGILPGQATVQPR 360 LQ +++L+ H GKP+YAECGGML+LLE+++ G+ G++ G+LPG A +Q R Sbjct: 297 QTLQDNPSMKAALQMHFQQGKPIYAECGGMLYLLESIVDKAGNRGEMVGLLPGHAIMQNR 356 Query: 361 LQGLGYQTLQLNLPGAVGEHLRCHTFHYSRAVVGAEFIARGERLFDSSEGEVVYRRGKVT 420 L+GLG+Q+ + G LR H FH+S IA GER+ ++S GE +Y+ ++T Sbjct: 357 LKGLGFQSAPM-----AGGVLRSHAFHHSLIETPLVPIAFGERVHNTSAGEAIYQLNRLT 411 Query: 421 ASYLHAYFRSAPRTVAALL 439 ASYLH YF S P A L Sbjct: 412 ASYLHCYFASNPTAAAQLF 430 >ref|ZP_03698505.1| CobB/CobQ domain protein glutamine amidotransferase [Lutiella nitroferrum 2002] gb|EEG08499.1| CobB/CobQ domain protein glutamine amidotransferase [Lutiella nitroferrum 2002] Length = 434 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 245/432 (56%), Positives = 305/432 (70%), Gaps = 9/432 (2%) Query: 8 CPALFISAPASGHGKTTITAALARLYRHQGKRVRVFKTGPDFLDPMVLQQASGQPVANLD 67 CPALF++APAS GKTT+TA LAR +R QG++VRVFKTGPDFLDP +L++ASG PV +LD Sbjct: 10 CPALFLTAPASHQGKTTLTAGLARHHRDQGRKVRVFKTGPDFLDPYILERASGHPVYSLD 69 Query: 68 LWLGGEDHCRRQVALAAAESDVLLVEGVMGLFDGEPSSADLAQLLGIPIVAVINARGMGQ 127 LW+ GE CRR++ AA+++D++L+EG MGLFDG PSSADLAQ G+P++AVI+A GM Q Sbjct: 70 LWMTGEADCRRRLYDAASDADLILIEGSMGLFDGTPSSADLAQTFGVPVLAVIDATGMAQ 129 Query: 128 TIGALAQGLLAYRPELKFAGVLANGVASPRHAQMLRQGLQNARPSVPLLTGLQRDMQFAL 187 T A+A GL ++RP L F GVLAN VAS RHA+ML LQ P + + R+ +L Sbjct: 130 TFAAVAHGLASFRPGLPFYGVLANRVASARHAEML---LQTLPPGLRCFGTVMREDAMSL 186 Query: 188 PERHLGLVAAPEIADLDARLDAVAERMSATSLANLPPEVDFGTPPPERAFPRLLEGKTIA 247 PERHLGLV A EI DL+ARL A +++AT+L LPP V F P A P+LL G TIA Sbjct: 187 PERHLGLVQAQEIDDLEARLQRAAAQIAATALTELPPPVAF-RPTLAEAVPKLLAGVTIA 245 Query: 248 VARDLAFSFIYPANLDLLALMGASVTFFSPLADEAVPECDAVWLPGGYPELHLPALQAAQ 307 +ARD AFSFIYPANL+LL +GA + FFSPLAD+A+PE DAV++PGGYPELHL L A Sbjct: 246 IARDQAFSFIYPANLELLTELGAKLAFFSPLADDALPEADAVYMPGGYPELHLATLSATL 305 Query: 308 RTQSSLRAHAGAGKPLYAECGGMLFLLETVIAGDGSSGQLCGILPGQATVQPRLQGLGYQ 367 RT + LR H AGKPLYAECGGML+LL+ + G +G L G+LPG AT+ RL GLG Q Sbjct: 306 RTATGLRDHVAAGKPLYAECGGMLYLLDALTDKQGQTGNLLGLLPGHATLGRRLAGLGLQ 365 Query: 368 TLQLNLPGAVGEHLRCHTFHYSRAVVGAEFIARGERLFDSSEGEVVYRRGKVTASYLHAY 427 +++L+ GE LR HTFHYS + R ++ GE VYR G + ASYLHAY Sbjct: 366 SVELD-----GETLRGHTFHYSSLTTPLAPLTHARRASGTAPGEAVYRHGSIVASYLHAY 420 Query: 428 FRSAPRTVAALL 439 F S P A L Sbjct: 421 FPSNPIATARLF 432 >ref|YP_004847059.1| CobB/CobQ domain containing protein glutamine amidotransferase [Pseudogulbenkiania sp. NH8B] dbj|BAK76645.1| CobB/CobQ domain protein glutamine amidotransferase [Pseudogulbenkiania sp. NH8B] Length = 434 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 248/439 (56%), Positives = 306/439 (69%), Gaps = 10/439 (2%) Query: 2 SAPQYR-CPALFISAPASGHGKTTITAALARLYRHQGKRVRVFKTGPDFLDPMVLQQASG 60 S P+ R CPALF++APAS GKTT+TA LAR +R QG++VRVFKTGPDFLDP +L++ASG Sbjct: 3 STPKARPCPALFLTAPASHQGKTTLTAGLARYHRDQGRKVRVFKTGPDFLDPYILERASG 62 Query: 61 QPVANLDLWLGGEDHCRRQVALAAAESDVLLVEGVMGLFDGEPSSADLAQLLGIPIVAVI 120 PV +LDLW+ GE CRR + AA ++D++L+EG MGLFDG PSSADLAQ G+P++AVI Sbjct: 63 HPVHSLDLWMTGEADCRRHLYDAAGDADLILIEGSMGLFDGTPSSADLAQTFGVPVLAVI 122 Query: 121 NARGMGQTIGALAQGLLAYRPELKFAGVLANGVASPRHAQMLRQGLQNARPSVPLLTGLQ 180 ++ GM QT A+A GL ++RP L F GVLAN VAS RHA+ML LQ PS+ + Sbjct: 123 DSTGMAQTFAAVAHGLASFRPGLPFYGVLANRVASARHAEML---LQPLPPSLRCFGTVM 179 Query: 181 RDMQFALPERHLGLVAAPEIADLDARLDAVAERMSATSLANLPPEVDFGTPPPERAFPRL 240 R+ +LPERHLGLV A EI DL+ARL A +++AT L LPP V F P A P L Sbjct: 180 REDAMSLPERHLGLVQAQEIDDLEARLQTAAAQIAATDLTALPPPVAF-RPTLAEAVPPL 238 Query: 241 LEGKTIAVARDLAFSFIYPANLDLLALMGASVTFFSPLADEAVPECDAVWLPGGYPELHL 300 L G IA+ARD AFSF+YPANL+LL +GA +TFFSPLAD+A+PE DAV+LPGGYPELHL Sbjct: 239 LSGVKIAIARDQAFSFVYPANLELLETLGAELTFFSPLADDALPEADAVYLPGGYPELHL 298 Query: 301 PALQAAQRTQSSLRAHAGAGKPLYAECGGMLFLLETVIAGDGSSGQLCGILPGQATVQPR 360 L A RT + LR H AGKPLYAECGGML+LL+ + G +G L G+LPG AT+ R Sbjct: 299 ATLSANLRTATGLRDHVAAGKPLYAECGGMLYLLDALTDKQGHTGNLLGLLPGHATLGRR 358 Query: 361 LQGLGYQTLQLNLPGAVGEHLRCHTFHYSRAVVGAEFIARGERLFDSSEGEVVYRRGKVT 420 L GLG Q+++L+ GE LR HTFHYS + R ++ GE VYR G + Sbjct: 359 LAGLGLQSVELD-----GETLRGHTFHYSSLTTPLAPLTHARRASGTAPGEAVYRHGSIV 413 Query: 421 ASYLHAYFRSAPRTVAALL 439 ASYLHAYF S P A L Sbjct: 414 ASYLHAYFPSNPIATARLF 432 >ref|NP_901226.1| cobyrinic acid a,c-diamide synthase [Chromobacterium violaceum ATCC 12472] gb|AAQ59232.1| cobyrinic acid A,C-diamide synthase [Chromobacterium violaceum ATCC 12472] Length = 430 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 254/433 (58%), Positives = 311/433 (71%), Gaps = 9/433 (2%) Query: 7 RCPALFISAPASGHGKTTITAALARLYRHQGKRVRVFKTGPDFLDPMVLQQASGQPVANL 66 RCPALF++APAS GKTT+TAALAR +R+QG+RVRVFKTGPDFLDP +L++ASG V L Sbjct: 5 RCPALFLTAPASHQGKTTVTAALARHHRNQGRRVRVFKTGPDFLDPYILERASGHTVYGL 64 Query: 67 DLWLGGEDHCRRQVALAAAESDVLLVEGVMGLFDGEPSSADLAQLLGIPIVAVINARGMG 126 DLW+ GED CR ++ AAA++D++LVEG MGLFDG PSSADLA LLGIP+ AVI+A GM Sbjct: 65 DLWMNGEDDCRARLRQAAADADLILVEGSMGLFDGTPSSADLAALLGIPLAAVIDAAGMA 124 Query: 127 QTIGALAQGLLAYRPELKFAGVLANGVASPRHAQMLRQGLQNARPSVPLLTGLQRDMQFA 186 QT A+A GL +RP L F G +AN VAS RHA+ML + L +PLL L+RD Sbjct: 125 QTFAAVAHGLAGFRPGLAFHGFVANHVASARHAEMLAERLP---AHLPLLAALRRDEAAR 181 Query: 187 LPERHLGLVAAPEIADLDARLDAVAERMSATSLANLPPEVDFGTPPPERAFPRLLEGKTI 246 LPERHLGLV A EIADLDARLD A +++AT+LA LPP V F + +P+LL G+ I Sbjct: 182 LPERHLGLVQAQEIADLDARLDRAAAQIAATALAELPPPVAFPV-VKQVEWPQLLAGQRI 240 Query: 247 AVARDLAFSFIYPANLDLLALMGASVTFFSPLADEAVPECDAVWLPGGYPELHLPALQAA 306 A+ARD AF+F+YPANL+ L +GA + FFSPLAD A+P+CDAV+LPGGYPELHL AL A Sbjct: 241 AIARDAAFAFVYPANLETLVQLGAELAFFSPLADAALPDCDAVYLPGGYPELHLGALSAN 300 Query: 307 QRTQSSLRAHAGAGKPLYAECGGMLFLLETVIAGDGSSGQLCGILPGQATVQPRLQGLGY 366 +++L AH AGKPLYAECGGML+LL+ + DG S + G+LPGQA +Q RL GLG Sbjct: 301 TALKAALHAHIEAGKPLYAECGGMLYLLDRLSNRDGDSAAMLGLLPGQAVLQDRLCGLGL 360 Query: 367 QTLQLNLPGAVGEHLRCHTFHYSRAVVGAEFIARGERLFDSSEGEVVYRRGKVTASYLHA 426 Q Q++ PG LR HTFHY+R E IAR R + GE +YRRG + ASY HA Sbjct: 361 Q--QMDFPGGA---LRGHTFHYTRLETALEPIARAARASGAGTGEALYRRGSLLASYFHA 415 Query: 427 YFRSAPRTVAALL 439 YF S P A L Sbjct: 416 YFPSNPIAAARLF 428