BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2733.p (375 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776052.1| G3E family GTPase [Herbaspirillum seropedica... 522 e-146 ref|ZP_08783020.1| cobalamin synthesis protein P47K [Methylobact... 422 e-116 ref|YP_004847061.1| cobalamin biosynthesis protein CobW [Pseudog... 402 e-110 ref|YP_003749488.1| cobalamin biosynthesis protein (cobw) [Ralst... 393 e-107 emb|CCA87785.1| putative cobalamin biosynthesis protein (cobW) [... 389 e-106 >ref|YP_003776052.1| G3E family GTPase [Herbaspirillum seropedicae SmR1] gb|ADJ64144.1| G3E family GTPase protein [Herbaspirillum seropedicae SmR1] Length = 377 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 308/375 (82%), Positives = 325/375 (86%), Gaps = 3/375 (0%) Query: 3 SVVCTLP---PPLPPIPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGE 59 SV +LP P LPPIPVTVVTGFLGAGKTTLLRGL+QRRQSRRLALLINEFGEVAIDG+ Sbjct: 2 SVALSLPELAPALPPIPVTVVTGFLGAGKTTLLRGLLQRRQSRRLALLINEFGEVAIDGD 61 Query: 60 LLRAEGDAQGQVQIQDFAHGLIAYGDDEHFVPAMLALAARRAQIDHVLIETSGLALPSAV 119 LLRAEGDAQGQVQIQDFAHGLIAYGDD HFVPAMLALAARRAQIDHVLIETSGLALPSAV Sbjct: 62 LLRAEGDAQGQVQIQDFAHGLIAYGDDAHFVPAMLALAARRAQIDHVLIETSGLALPSAV 121 Query: 120 MEVLQSPELAPHFVLDATLAVVDTPLLLEEAFASGDAVRDATAQLFRQQLECADVVVLNK 179 MEVLQ E+A HFVLDATLAVVDTPLLLE+AFAS DAV ATAQLFRQQLECADVVVLNK Sbjct: 122 MEVLQGAEMARHFVLDATLAVVDTPLLLEDAFASADAVGAATAQLFRQQLECADVVVLNK 181 Query: 180 IDGMEEAPLLQAEETVRALAPNVRFLELAYGARLDIRLALGLRLHQAGSTVHHHYTPVGM 239 IDGMEEAPLLQAE+ VRALAPNVRFLELAYGARLDIRLALGLRLHQAG+TVHHHYTPV M Sbjct: 182 IDGMEEAPLLQAEQAVRALAPNVRFLELAYGARLDIRLALGLRLHQAGATVHHHYTPVSM 241 Query: 240 PGERASVAADQWRFNGHAHSGLGAHSHGLSTHKHFHEQDPGWQSFTLRSQAAQAPESLRR 299 PGERA VA DQ RFNGH HSGLGAHSHGLSTHKHFHEQDPGWQSFTLRS A Q E LR+ Sbjct: 242 PGERAQVAPDQRRFNGHVHSGLGAHSHGLSTHKHFHEQDPGWQSFTLRSLAHQDAERLRQ 301 Query: 300 AVVAVALDQPILRTKGFIATGEGSTQLLQAVRARAVVASAQGGKSAGGSELVFIGYHPSR 359 AV A AL +PILR KGF+ T +G+ + V S QGG G SELVFIGYHPSR Sbjct: 302 AVAAAALAEPILRAKGFVHTDQGARLVQAVRARVVVAESGQGGGRGGSSELVFIGYHPSR 361 Query: 360 ARVAQLLSSLTGTEW 374 A+VA++LS TG +W Sbjct: 362 AKVARILSETTGVDW 376 >ref|ZP_08783020.1| cobalamin synthesis protein P47K [Methylobacter tundripaludum SV96] gb|EGW19665.1| cobalamin synthesis protein P47K [Methylobacter tundripaludum SV96] Length = 372 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 231/368 (62%), Positives = 272/368 (73%), Gaps = 11/368 (2%) Query: 15 IPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGELLRAEGDAQGQVQIQ 74 IPVT+VTGFLG+GKTTLL L++ RQ+RRLALLINEFGEV+IDG L+ V+I Sbjct: 7 IPVTIVTGFLGSGKTTLLSSLIKSRQTRRLALLINEFGEVSIDGALINDSVGGDEHVRIH 66 Query: 75 DFAHGLIAYGDDEHFVPAMLALAARRAQIDHVLIETSGLALPSAVMEVLQSPELAPHFVL 134 DF +GLIAYGDDEHF+P M A+A RRA +DHVLIETSGLALP+AVME+LQ+PELA F+L Sbjct: 67 DFPYGLIAYGDDEHFIPTMQAIAGRRANVDHVLIETSGLALPTAVMELLQTPELAGDFIL 126 Query: 135 DATLAVVDTPLLLEEAF---ASGD----AVRDATAQLFRQQLECADVVVLNKIDGMEEAP 187 DATLAVVDTPLLL + F S D AV D+ A LF QQLE ADVVVLNKID ++E Sbjct: 127 DATLAVVDTPLLLSDQFDRDLSADSPQAAVADSVATLFEQQLEYADVVVLNKIDALDEDA 186 Query: 188 LLQAEETVRALAPNVRFLELAYGARLDIRLALGLRLHQAGSTVHHH-YTPVGMPGERASV 246 LL AE+ VR APNVRFLELAY A+LDIRLALGLRLHQ T H+H +TP+ PG A Sbjct: 187 LLLAEQRVRDRAPNVRFLELAYNAQLDIRLALGLRLHQPTFTTHNHRFTPI--PGSGAPT 244 Query: 247 AADQWRFNGHAHSGLGAHSHGLSTHKHFHEQDPGWQSFTLRSQAAQAPESLRRAVVAVAL 306 R NGHAHSGL HSHGL+THKHFHEQDPGW SF LRSQ Q E++++A++ VA Sbjct: 245 LGSHARLNGHAHSGLAGHSHGLTTHKHFHEQDPGWLSFVLRSQEPQQAETIKQALIEVAK 304 Query: 307 DQPILRTKGFIATGEGSTQLLQAVRARAVVASAQGGKSAGGSELVFIGYHPSRARVAQLL 366 +P+LR KGFI + S L+Q VR R + S +S+ SELVFIGYH +R VA+LL Sbjct: 305 AEPLLRCKGFILFADQSV-LVQGVRTRVTIGSDTAKQSSKESELVFIGYHLNRNTVAELL 363 Query: 367 SSLTGTEW 374 S LTGT W Sbjct: 364 SKLTGTAW 371 >ref|YP_004847061.1| cobalamin biosynthesis protein CobW [Pseudogulbenkiania sp. NH8B] dbj|BAK76647.1| cobalamin biosynthesis protein CobW [Pseudogulbenkiania sp. NH8B] Length = 369 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 222/368 (60%), Positives = 269/368 (73%), Gaps = 9/368 (2%) Query: 13 PPIPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGELLRAEGDAQGQVQ 72 P IPVTVVTGFLGAGKTTLL L++ + RRLA+L+NEFGEV+IDG LLR EG G+V+ Sbjct: 4 PRIPVTVVTGFLGAGKTTLLSNLIRDSKQRRLAILVNEFGEVSIDGALLRGEG---GEVE 60 Query: 73 IQDFAHGLIAYGDDEHFVPAMLALAARRAQIDHVLIETSGLALPSAVMEVLQSPELAPHF 132 I D +HGL+AY DDE F+P MLAL RR+ IDHVLIETSGLALPSAVME LQ LAP+F Sbjct: 61 IHDLSHGLVAYDDDEDFLPTMLALWERRSVIDHVLIETSGLALPSAVMERLQGEALAPYF 120 Query: 133 VLDATLAVVDTPLLLEEAF----ASGDAVRDATAQLFRQQLECADVVVLNKIDGMEEAPL 188 VLDATLAVVDTPLLL+ F + AV + A+LF QL AD+VVLNKID +++ L Sbjct: 121 VLDATLAVVDTPLLLDGGFGQPSGTEQAVDASVAELFEMQLANADIVVLNKIDALDDEAL 180 Query: 189 LQAEETVRALAPNVRFLELAYGARLDIRLALGLRLHQAGSTVHHHYTPVG-MPGERASVA 247 L AE VRALAP++RF+ELAY A+LD RL LGL LH+ +T H HY PV MPG Sbjct: 181 LAAETRVRALAPSIRFIELAYDAKLDTRLTLGLHLHEPANTAHRHYGPVATMPGLAMRPL 240 Query: 248 ADQWRFNGHAHSGLGAHSHGLSTHKHFHEQDPGWQSFTLRSQAAQAPESLRRAVVAVALD 307 A+Q +GH+HSGLGAHSHGL+THKHFHEQDPGWQSF +RS+ AQ +LR AV A+A Sbjct: 241 ANQGLLDGHSHSGLGAHSHGLTTHKHFHEQDPGWQSFMIRSKEAQDAATLREAVAAIARS 300 Query: 308 QPILRTKGFIATGEGSTQLL-QAVRARAVVASAQGGKSAGGSELVFIGYHPSRARVAQLL 366 +P+LR KGF +G+ +LL Q VR+R ++ A ++LVFIGYHPSR R+ + L Sbjct: 301 EPLLRIKGFAPPHDGAGRLLVQGVRSRIELSHEPDATPAKQAQLVFIGYHPSRPRIVEQL 360 Query: 367 SSLTGTEW 374 LTGT W Sbjct: 361 CELTGTMW 368 >ref|YP_003749488.1| cobalamin biosynthesis protein (cobw) [Ralstonia solanacearum PSI07] emb|CBJ34845.1| putative cobalamin biosynthesis protein (cobW) [Ralstonia solanacearum PSI07] Length = 367 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 222/366 (60%), Positives = 260/366 (71%), Gaps = 6/366 (1%) Query: 13 PPIPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGELLRAEGDAQGQVQ 72 P IPVTV TGFLGAGKTTLL L++ + RRLA+L+NEFGEV+IDG LLR +G A G + Sbjct: 3 PRIPVTVFTGFLGAGKTTLLSNLIRDNKQRRLAILVNEFGEVSIDGALLRGDG-APGGAE 61 Query: 73 IQDFAHGLIAYGDDEHFVPAMLALAARRAQIDHVLIETSGLALPSAVMEVLQSPELAPHF 132 + D ++GLIAY DD F+P M AL RR IDHVLIETSGLALPSAVME LQS LAP+F Sbjct: 62 VHDLSNGLIAYDDDADFLPTMQALWQRRGTIDHVLIETSGLALPSAVMESLQSEALAPYF 121 Query: 133 VLDATLAVVDTPLLLEEAF---ASGDAVRDATAQLFRQQLECADVVVLNKIDGMEEAPLL 189 VLDATLAVVDTPLLL F A G A + A LF QQL AD+VVLNKID ++E L Sbjct: 122 VLDATLAVVDTPLLLSGGFDHAADGTAAQTPVASLFEQQLANADIVVLNKIDALDEDAQL 181 Query: 190 QAEETVRALAPNVRFLELAYGARLDIRLALGLRLHQAGSTVHHHYTPVG-MPGERASVAA 248 AE VRALAP+VRF+ELA+ ARLD RL LGLRLH+ ST H HY P+ +PG A Sbjct: 182 DAEARVRALAPSVRFIELAFDARLDTRLTLGLRLHEPASTAHRHYGPMATLPGLNLRPLA 241 Query: 249 DQWRFNGHAHSGLGAHSHGLSTHKHFHEQDPGWQSFTLRSQAAQAPESLRRAVVAVALDQ 308 +Q +GH+HSGL AHSHGL+THKHFHE+DPGWQSF +RSQ AQ ++LR AV A+ + Sbjct: 242 NQRLLDGHSHSGLSAHSHGLATHKHFHERDPGWQSFMIRSQDAQDADTLRHAVAAITRSE 301 Query: 309 PILRTKGFIATGEGSTQLLQAVRARAVVASAQGGKSAGGSELVFIGYHPSRARVAQLLSS 368 PILR KGF G G L+QAVR R ++LVFIGYHPSR RVA+ L Sbjct: 302 PILRAKGFARAGAGRV-LIQAVRNRVEARLEPDAAPPKQAQLVFIGYHPSRPRVAEQLRE 360 Query: 369 LTGTEW 374 LTGT+W Sbjct: 361 LTGTDW 366 >emb|CCA87785.1| putative cobalamin biosynthesis protein (cobW) [Ralstonia syzygii R24] Length = 367 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 220/366 (60%), Positives = 259/366 (70%), Gaps = 6/366 (1%) Query: 13 PPIPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGELLRAEGDAQGQVQ 72 P IPVTV TGFLGAGKTTLL L++ RRLA+L+NEFGEV+IDG LLR +G+ +G + Sbjct: 3 PRIPVTVFTGFLGAGKTTLLSNLIRDNTQRRLAILVNEFGEVSIDGALLRGDGE-RGGAE 61 Query: 73 IQDFAHGLIAYGDDEHFVPAMLALAARRAQIDHVLIETSGLALPSAVMEVLQSPELAPHF 132 + D ++GLIAY DD F+P M AL RR IDHVLIETSGLALPSAVME LQS LAP+F Sbjct: 62 VHDLSNGLIAYDDDADFLPTMQALWQRRGTIDHVLIETSGLALPSAVMESLQSEALAPYF 121 Query: 133 VLDATLAVVDTPLLLEEAF---ASGDAVRDATAQLFRQQLECADVVVLNKIDGMEEAPLL 189 VLDATLAVVDTPLLL F A G A + A LF QQL AD+VVLNKID ++E L Sbjct: 122 VLDATLAVVDTPLLLSGGFDHAADGAAAQTPVASLFEQQLANADIVVLNKIDALDEDAQL 181 Query: 190 QAEETVRALAPNVRFLELAYGARLDIRLALGLRLHQAGSTVHHHYTPVG-MPGERASVAA 248 AE VRALAP+VRF+ELA+ ARLD RL LGLRLH+ ST HY P+ +PG A Sbjct: 182 AAEARVRALAPSVRFIELAFDARLDTRLTLGLRLHEPASTAQRHYGPMATLPGLNLRPLA 241 Query: 249 DQWRFNGHAHSGLGAHSHGLSTHKHFHEQDPGWQSFTLRSQAAQAPESLRRAVVAVALDQ 308 +Q +GH+HSGL AHSHGL+THKHFHE+DPGWQSF +RSQ AQ ++LR AV A+ + Sbjct: 242 NQRLLDGHSHSGLSAHSHGLATHKHFHERDPGWQSFMIRSQDAQDADTLRHAVTAITRSE 301 Query: 309 PILRTKGFIATGEGSTQLLQAVRARAVVASAQGGKSAGGSELVFIGYHPSRARVAQLLSS 368 PILR KGF G G L+QAVR R ++LVFIGYHPSR RVA+ L Sbjct: 302 PILRAKGFARAGAGRV-LIQAVRNRVEARLEPDAAPPKQAQLVFIGYHPSRPRVAEQLRE 360 Query: 369 LTGTEW 374 LTGT+W Sbjct: 361 LTGTDW 366