BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2727.p (350 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776057.1| cobalamin biosynthesis CbiD transmembrane pr... 582 e-164 ref|ZP_08783025.1| cobalt-precorrin-6A synthase (deacetylating) ... 410 e-112 ref|ZP_03698512.1| cobalamin biosynthesis protein CbiD [Lutiella... 356 3e-96 ref|YP_004847066.1| cobalamin biosynthesis protein CbiD [Pseudog... 356 3e-96 ref|NP_901236.1| cobalamin biosynthesis cbiD transmembrane prote... 353 2e-95 >ref|YP_003776057.1| cobalamin biosynthesis CbiD transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64149.1| cobalamin biosynthesis CbiD transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 396 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 310/350 (88%), Positives = 323/350 (92%) Query: 1 MTVQQTEVSLPDGLHYLSVPIQSVSMIDADTAQAEVLKDGGDDPDNTHGATIVAQVRRNA 60 +T+Q+TEVSLPDG HYL VP+Q+V MI D AQA+VLKDGGDDPDNTHGATI AQVRRN Sbjct: 47 VTLQETEVSLPDGRHYLCVPVQAVEMIAPDIAQADVLKDGGDDPDNTHGATIFAQVRRNQ 106 Query: 61 GGEVHFFAGEGVGTATMPGLRVAVGEPAINPVPRAMMRAAVAEVLAELLPGAQGWGFDLT 120 GEV FFAG+GVGTATMPGLRVAVGEPAINPVPRAMMRAAVAEVLAEL PG GFDLT Sbjct: 107 SGEVRFFAGQGVGTATMPGLRVAVGEPAINPVPRAMMRAAVAEVLAELRPGEPACGFDLT 166 Query: 121 IGCREGLSIAPKTFNPKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAPGD 180 IGCREG+SIAPKTFNPKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAPGD Sbjct: 167 IGCREGVSIAPKTFNPKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAPGD 226 Query: 181 AVAYLPGKIGRVFVAQTLGLPDKRSVQIANFLGDALDFTQKALAEEGRTLPLLWLAGHPG 240 AVAYLPGKIGRVFVAQ LGLPDKRSVQIANFLGDALDFT++ALAE GRTLPLLWLAGHPG Sbjct: 227 AVAYLPGKIGRVFVAQELGLPDKRSVQIANFLGDALDFTEQALAEAGRTLPLLWLAGHPG 286 Query: 241 KLAKVLDGVWDTHSSKSNMAMQGVARVAEEMNAAGQGVWFDAALLQQMKEANTVEAIIEL 300 KLAKVLDGVWDTHSSKSNMAMQGVARVAEEMNAA GV FDA LLQQMKEANTVEAIIEL Sbjct: 287 KLAKVLDGVWDTHSSKSNMAMQGVARVAEEMNAAESGVLFDAPLLQQMKEANTVEAIIEL 346 Query: 301 VRQQDAALSRRLWCEIEARIAALTQARVPAVERIAVRLFDLDGQQLGEGA 350 VRQQDAAL+RRLWCEIEARIA L QARVP+V RI VRLFDL+G QLG GA Sbjct: 347 VRQQDAALARRLWCEIEARIATLAQARVPSVARIEVRLFDLEGHQLGAGA 396 >ref|ZP_08783025.1| cobalt-precorrin-6A synthase (deacetylating) [Methylobacter tundripaludum SV96] gb|EGW19670.1| cobalt-precorrin-6A synthase (deacetylating) [Methylobacter tundripaludum SV96] Length = 377 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 220/346 (63%), Positives = 266/346 (76%), Gaps = 21/346 (6%) Query: 5 QTEVSLPDGLHYLSVPIQSVSMIDADTAQAEVLKDGGDDPDNTHGATIVAQVRRNAGGEV 64 Q +++L D HYL+VPIQ ++ TA+A+VLKDGGDDPDNTHGATI A+VRRN G++ Sbjct: 48 QVQITLADDTHYLTVPIQDCRWLNEHTARADVLKDGGDDPDNTHGATIFAEVRRNNEGQI 107 Query: 65 HFFAGEGVGTATMPGLRVAVGEPAINPVPRAMMRAAVAEVLAELLPGAQGWGFDLTIGCR 124 FFAG GVGTAT PGLRVAVGEPAINP PR MMR AVAEV + GFDL IGC Sbjct: 108 RFFAGSGVGTATQPGLRVAVGEPAINPTPRKMMRQAVAEV-----SDNKDQGFDLIIGCI 162 Query: 125 EGLSIAPKTFNPKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAPGD---A 181 G +IA KTFNP+LGIVGGISILGTSGIVEP+S+ASWIASIEVY+RVAL GD + Sbjct: 163 NGEAIAKKTFNPRLGIVGGISILGTSGIVEPLSLASWIASIEVYVRVALG----GDDINS 218 Query: 182 VAYLPGKIGRVFVAQTLGLPDKRSVQIANFLGDALDFTQKALAEEGRTLPLLWLAGHPGK 241 +A LPGKIGR + + LGLP++RSVQIANFLGDALDF Q+ALAE+ R L +LWL GHPGK Sbjct: 219 IALLPGKIGRTYAKEALGLPEQRSVQIANFLGDALDFLQQALAEQQRHLDVLWLLGHPGK 278 Query: 242 LAKVLDGVWDTHSSKSNMAMQGVARVAEEMNAAGQGVWFDAALLQQMKEANTVEAIIELV 301 LAKVLDGVWDTHSS+S+MAM VARVA E FD+ L+Q++++ANTVEA +E + Sbjct: 279 LAKVLDGVWDTHSSRSDMAMSVVARVAGERG-------FDSRLVQELEQANTVEAAMERL 331 Query: 302 RQQDAALSRRLWCEIEARIAALTQARVPAVERIAVRLFDLDGQQLG 347 +++ A + LW +IE RIAAL RVPAV+++ VRLF+L G+ LG Sbjct: 332 KKETGA--QALWIDIEQRIAALVHQRVPAVKKVEVRLFNLQGESLG 375 >ref|ZP_03698512.1| cobalamin biosynthesis protein CbiD [Lutiella nitroferrum 2002] gb|EEG08506.1| cobalamin biosynthesis protein CbiD [Lutiella nitroferrum 2002] Length = 384 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 203/348 (58%), Positives = 248/348 (71%), Gaps = 15/348 (4%) Query: 3 VQQTEVSLPDGLHYLSVPIQSVSMIDADTAQAEVLKDGGDDPDNTHGATIVAQVRRNAGG 62 V++ EVSLPD +YL VP++ V + + +AEVLK GGDDPDNT GATI A+V N G Sbjct: 44 VREVEVSLPDPDYYLVVPVEKVERLTSGAVRAEVLKYGGDDPDNTDGATIFAEVSVNNSG 103 Query: 63 EVHFFAGEGVGTATMPGLRVAVGEPAINPVPRAMMRAAVAEVLAELLPGAQGWGFDLTIG 122 + F A GVGT T PGLR+ GEPAINPVPR MM+ AV EVL G+ GFDL IG Sbjct: 104 TLRFIAAPGVGTVTQPGLRIPPGEPAINPVPRQMMQWAVDEVLN----GSTNPGFDLAIG 159 Query: 123 CREGLSIAPKTFNPKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAPGDAV 182 C +G IA +TFNP LGI+GGISILGTSGIVEPMS+A+W+ASIEVYIRVAL DA+ Sbjct: 160 CVDGDKIAKRTFNPMLGILGGISILGTSGIVEPMSLAAWMASIEVYIRVALGHGP--DAI 217 Query: 183 AYLPGKIGRVFVAQTLGLPDKRSVQIANFLGDALDFTQKALAEEGRTLPLLWLAGHPGKL 242 A+ PGKIGR + A TLGL K VQIANF+G +LD+ Q+ L E+ L LW+ GHPGK+ Sbjct: 218 AFTPGKIGRGYAADTLGLEKKEVVQIANFVGVSLDYAQQTLEEQQARLGTLWVLGHPGKI 277 Query: 243 AKVLDGVWDTHSSKSNMAMQGVARVAEEMNAAGQGVWFDAALLQQMKEANTVEAIIELVR 302 AK+LDGVWDTHSSKS MAM VA VA EM F A L+ Q+++ANTVE +++LV+ Sbjct: 278 AKLLDGVWDTHSSKSGMAMGSVAAVAAEMG-------FSANLVAQIEKANTVENVVQLVK 330 Query: 303 QQDAALSRRLWCEIEARIAALTQARVPAVERIAVRLFDLDGQQLGEGA 350 + A +R W EIE R+AAL +VP+VER+AVRLF +DG LGE A Sbjct: 331 EH--ADARGYWMEIERRVAALMAPKVPSVERVAVRLFSMDGTPLGEAA 376 >ref|YP_004847066.1| cobalamin biosynthesis protein CbiD [Pseudogulbenkiania sp. NH8B] dbj|BAK76652.1| cobalamin biosynthesis protein CbiD [Pseudogulbenkiania sp. NH8B] Length = 384 Score = 356 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 203/348 (58%), Positives = 247/348 (70%), Gaps = 15/348 (4%) Query: 3 VQQTEVSLPDGLHYLSVPIQSVSMIDADTAQAEVLKDGGDDPDNTHGATIVAQVRRNAGG 62 V++ EVSLPD +YL VP++ V + + +AEVLK GGDDPDNT GATI A+V N G Sbjct: 44 VREVEVSLPDPDYYLVVPVEKVERLTSGAVRAEVLKYGGDDPDNTDGATIFAEVSVNNSG 103 Query: 63 EVHFFAGEGVGTATMPGLRVAVGEPAINPVPRAMMRAAVAEVLAELLPGAQGWGFDLTIG 122 + F A GVGT T PGLR+ GEPAINPVPR MM+ AV EVLA G GFDL IG Sbjct: 104 TLRFIAAPGVGTVTQPGLRIPPGEPAINPVPRQMMQRAVDEVLA----GGTNPGFDLAIG 159 Query: 123 CREGLSIAPKTFNPKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAPGDAV 182 C +G IA +TFNP LGI+GGISILGTSGIVEPMS+A+W+ASIEVYIRVAL DA+ Sbjct: 160 CVDGDKIAKRTFNPMLGILGGISILGTSGIVEPMSLAAWMASIEVYIRVALGHGP--DAI 217 Query: 183 AYLPGKIGRVFVAQTLGLPDKRSVQIANFLGDALDFTQKALAEEGRTLPLLWLAGHPGKL 242 A+ PGKIGR + A TL L K VQIANF+G +LD+ Q+ L E+ L LW+ GHPGK+ Sbjct: 218 AFTPGKIGRGYAADTLHLEKKEVVQIANFVGVSLDYAQQTLEEQQARLGTLWVLGHPGKI 277 Query: 243 AKVLDGVWDTHSSKSNMAMQGVARVAEEMNAAGQGVWFDAALLQQMKEANTVEAIIELVR 302 AK+LDGVWDTHSSKS MAM VA VA EM F A L+ Q+++ANTVE +++LV+ Sbjct: 278 AKLLDGVWDTHSSKSGMAMGSVAAVAAEMG-------FSANLVAQIEKANTVENVVQLVK 330 Query: 303 QQDAALSRRLWCEIEARIAALTQARVPAVERIAVRLFDLDGQQLGEGA 350 + A +R W EIE R+AAL +VP+VER+AVRLF +DG LGE A Sbjct: 331 EH--ADARGYWMEIERRVAALMAPKVPSVERVAVRLFSMDGTPLGEAA 376 >ref|NP_901236.1| cobalamin biosynthesis cbiD transmembrane protein [Chromobacterium violaceum ATCC 12472] sp|Q7NXR0|CBID_CHRVO RecName: Full=Putative cobalt-precorrin-6A synthase [deacetylating] gb|AAQ59242.1| cobalamin biosynthesis cbiD transmembrane protein [Chromobacterium violaceum ATCC 12472] Length = 377 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 197/343 (57%), Positives = 243/343 (70%), Gaps = 15/343 (4%) Query: 8 VSLPDGLHYLSVPIQSVSMIDADTAQAEVLKDGGDDPDNTHGATIVAQVRRNAGGEVHFF 67 +SLPD YL+VP++SV+ +D +T +AEVLK GDDPDNT GATI A+V+ N+ G + F Sbjct: 50 ISLPDPDFYLAVPVESVAWLDENTVRAEVLKYAGDDPDNTDGATIFAEVKLNSSGALRFL 109 Query: 68 AGEGVGTATMPGLRVAVGEPAINPVPRAMMRAAVAEVLAELLPGAQGWGFDLTIGCREGL 127 A GVG T PGLR+ GEPAINPVPR MMR AV EVLA G G DL IGC +G Sbjct: 110 AAPGVGMVTQPGLRIPPGEPAINPVPRQMMRMAVDEVLA----GRPDPGIDLAIGCVDGD 165 Query: 128 SIAPKTFNPKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAPGDAVAYLPG 187 IA +TFNP LGIVGGISILGTSGIVEPMS A+WIASIEVY+RVAL P A+A+ PG Sbjct: 166 KIAKRTFNPMLGIVGGISILGTSGIVEPMSQAAWIASIEVYVRVALGELPP--AIAFTPG 223 Query: 188 KIGRVFVAQTLGLPDKRSVQIANFLGDALDFTQKALAEEGRTLPLLWLAGHPGKLAKVLD 247 KIGR + A TLGL K+ VQIANF+GD+LDF + L E+GR L LW+ GHPGK+AK+LD Sbjct: 224 KIGRGYAADTLGLEKKQVVQIANFVGDSLDFAESVLIEQGRILDTLWVLGHPGKIAKLLD 283 Query: 248 GVWDTHSSKSNMAMQGVARVAEEMNAAGQGVWFDAALLQQMKEANTVEAIIELVRQQDAA 307 GVWDTHS KS MAM VA VA ++ + + L+ Q+K+ANTVE +++++ Q Sbjct: 284 GVWDTHSGKSGMAMDAVAGVAADLG-------YPSELVAQIKQANTVENVVQIMNSQPD- 335 Query: 308 LSRRLWCEIEARIAALTQARVPAVERIAVRLFDLDGQQLGEGA 350 +R W EIE R AA +VP+V ++AVRLF +DG LGE A Sbjct: 336 -TRGYWMEIERRTAARMATKVPSVRQVAVRLFSMDGTPLGEAA 377