BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2718.p         (178 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002980243.1| hypothetical protein Rpic12D_0264 [Ralstonia...   124   4e-27
ref|YP_724541.1| hypothetical protein H16_A0021 [Ralstonia eutro...    55   3e-06

>ref|YP_002980243.1| hypothetical protein Rpic12D_0264 [Ralstonia pickettii 12D]
 gb|ACS61571.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 180

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 98/155 (63%), Gaps = 2/155 (1%)

Query: 20  AQQPPEAIMESCLLFDRATDPSILISPISGRAQVMEQGGPAP-YRLFLPDGDNKAMRVGY 78
           A  P ++I++SCLLFD+    +I I PI G A+V++     P Y +F P   + ++ VGY
Sbjct: 19  ASAPSDSIVDSCLLFDKPVRSTISILPIDG-AEVLQDDYEVPGYTVFRPGFKSNSLGVGY 77

Query: 79  ASGKGKEGDYIFVNAHRGYIDRAAAAGFFSPRRLESPRQASFALLRQRGTRYVCVMEGRG 138
           A+ K    D++ V  HRGYI RA   G + P+R+E P +A +A++R+   +YVC++E  G
Sbjct: 78  ATSKHGNDDFVIVGRHRGYISRAIPRGQYKPQRIEPPERALYAVIREDAQQYVCLVESNG 137

Query: 139 RGGSTILRSAFVARIPPKMGGELILYYRLQDMRQL 173
            G +  +RSAFVARIPP     L LY+++ D+++L
Sbjct: 138 NGSAAFVRSAFVARIPPDRNAGLTLYFKVADIKKL 172


>ref|YP_724541.1| hypothetical protein H16_A0021 [Ralstonia eutropha H16]
 emb|CAJ91173.1| Hypothetical protein H16_A0021 [Ralstonia eutropha H16]
          Length = 173

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 22  QPPEAIMESCLLFDRATDPSILISPISGRAQVMEQGGPAPYRLFLPDGDNKAMRVGYASG 81
           Q P  + +SC+L +  +  +     + G A V++   P    L      +K +  GYAS 
Sbjct: 20  QVPSQVFDSCVLME--SYKAAKYQELGGDATVIDDEIPGYSVL---SYQHKGIAYGYASS 74

Query: 82  KGKEGDYIFVNAHRGYIDRAAAAGFFSPRRLESPRQASFALLRQRGTRYVCV---MEGRG 138
              + D++ V + R  I +A   G  +P R++ P QA + ++R +   Y CV    EG G
Sbjct: 75  ASSQPDFLVVGSQRVSILKAQRVGKANPERID-PAQAVYGIVRYKARAYYCVASNFEGLG 133

Query: 139 RGGS-TILRSAFVARIPP-----KMGGELILYYRLQDMRQLAR 175
           R GS   +R+A++A +       KM G   LYY ++D+R + R
Sbjct: 134 RSGSFQNIRAAYIAPLNASSKALKMSG---LYYSVRDIRNIPR 173