BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2716.p         (255 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776065.1| hypothetical protein Hsero_2661 [Herbaspiril...   381   e-104
ref|ZP_02468708.1| hypothetical protein Bpse38_35442 [Burkholder...    85   1e-14
gb|AEG69763.1| conserved hypothetical protein [Ralstonia solanac...    57   2e-06

>ref|YP_003776065.1| hypothetical protein Hsero_2661 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64157.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 214

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query: 42  MLYLLVRAHPPASAAAAEGRCEVMCESIAVGSLAGRDAMVVYLSPLEADIDAAWNARSGG 101
           MLYLLVRAHPPASAAAAEGRCEVMCESIAVGSLAGRDAMVVYLSPLEADIDAAWNARSGG
Sbjct: 1   MLYLLVRAHPPASAAAAEGRCEVMCESIAVGSLAGRDAMVVYLSPLEADIDAAWNARSGG 60

Query: 102 HYQVLAVHDFLPDELLRQHRDSLPYCLHIGWGARDGRLAVRRDGGLVRVSAAALAWVSAD 161
           HYQVLAVHDFLPDELLRQHRDSLPYCLHIGWGARDGRLAVRRDGGLVRVSAAALAWVSAD
Sbjct: 61  HYQVLAVHDFLPDELLRQHRDSLPYCLHIGWGARDGRLAVRRDGGLVRVSAAALAWVSAD 120

Query: 162 VEAVRLVVEPFQLESRSRLWEGAGLYAHAEVEAKALACTEPERRRHAQRAIVRLPGTVAA 221
           VEAVRLVVEPFQLESRSRLWEGAGLYAHAEVEAKALACTEPERRRHAQRAIVRLPGTVAA
Sbjct: 121 VEAVRLVVEPFQLESRSRLWEGAGLYAHAEVEAKALACTEPERRRHAQRAIVRLPGTVAA 180

Query: 222 PPGINQLALYDLESAHWHFVPLSLAQQILSQQED 255
           PPGINQLALYDLESAHWHFVPLSLAQQILSQQED
Sbjct: 181 PPGINQLALYDLESAHWHFVPLSLAQQILSQQED 214


>ref|ZP_02468708.1| hypothetical protein Bpse38_35442 [Burkholderia thailandensis
           MSMB43]
          Length = 182

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 2/174 (1%)

Query: 76  GRDAMVVYLSPLEADIDAAWNARSGGHYQVLAVHDFLPDELLRQHRDSLPYCLHIGWGAR 135
           G DA+  YLSP++A +DA + ++ G  Y  +    F+P   +  +   L   +H+GW AR
Sbjct: 8   GGDAICAYLSPVDAMLDAIFASKQGKRYYAIPASGFVPTTFIDDNNGRLALDVHLGWPAR 67

Query: 136 DGRLAVRRDGGLVR-VSAAALAWVSADVEAVRLVVEPFQLESRSRLWEGAGLYAHAEVEA 194
           +G+L  RR+G  V   S   +  +      +   +E   L     L+  AGL+A+ E   
Sbjct: 68  NGQLIARRNGKPVSCASHHEMQVLPEHAHHIAFRLEQGTLAVLDELYMSAGLFAYRESFN 127

Query: 195 KALACTEPERRRHAQRAIVRLPGTVAAPPGINQLALYDLESAHWHFV-PLSLAQ 247
             +   E  R R    A+ ++ G   A    NQ+ALYD E   WHFV P  LA+
Sbjct: 128 TMMGWPETRRNRAVTAAVQKMGGLAPAESEYNQMALYDAEFEQWHFVSPAPLAK 181


>gb|AEG69763.1| conserved hypothetical protein [Ralstonia solanacearum Po82]
          Length = 215

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 76/169 (44%)

Query: 79  AMVVYLSPLEADIDAAWNARSGGHYQVLAVHDFLPDELLRQHRDSLPYCLHIGWGARDGR 138
           A+  +LSP++A I+     + G   QV+      P              LH+GW A +G+
Sbjct: 41  AVRCHLSPVDALIEVVQMMQIGMECQVVPAAVVDPSHFKGAGDRGYRADLHLGWPACNGK 100

Query: 139 LAVRRDGGLVRVSAAALAWVSADVEAVRLVVEPFQLESRSRLWEGAGLYAHAEVEAKALA 198
           L +R  G L   S    +  + +     L V+   L + SRL E AGL+A +E   + L 
Sbjct: 101 LMLRFTGRLATYSRVLTSNQAVEPSPTCLQVDEDSLAAFSRLREFAGLFAWSETITQILQ 160

Query: 199 CTEPERRRHAQRAIVRLPGTVAAPPGINQLALYDLESAHWHFVPLSLAQ 247
                     +RA+  +         +NQ+A++D E   WHFV L+LA+
Sbjct: 161 WDAERLTGVVRRALDTIDIEHGDASQVNQIAMFDPEFEQWHFVALNLAE 209