BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2710.p         (185 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776071.1| hypothetical protein Hsero_2667 [Herbaspiril...    97   8e-19
ref|YP_001353990.1| hypothetical protein mma_2300 [Janthinobacte...    64   8e-09
ref|YP_004752420.1| hypothetical protein CFU_1765 [Collimonas fu...    64   1e-08
ref|YP_001099405.1| putative histone H1-like protein HC2 [Hermin...    54   9e-06

>ref|YP_003776071.1| hypothetical protein Hsero_2667 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64163.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 136

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 81/99 (81%), Positives = 86/99 (86%)

Query: 87  EKADKPVKAEKVEKVEKVEKVEKAPKAKKVKQVRDSFTMPENEYAVLAQVKKTCLKSGVE 146
           +K +K  K EK  K EK EK+EKA K KKVKQVRDSFTMPENEYAVLAQVKK+CLK+GVE
Sbjct: 38  KKVEKVEKIEKPVKAEKTEKIEKAAKPKKVKQVRDSFTMPENEYAVLAQVKKSCLKAGVE 97

Query: 147 IKKSDLLRIGVSLIKNLKINELKDILGSLTPLKVGRPKK 185
           IKKSDLLRIGVSLIKNLKI ELKDIL  LTPLKVGRPKK
Sbjct: 98  IKKSDLLRIGVSLIKNLKIAELKDILAGLTPLKVGRPKK 136


>ref|YP_001353990.1| hypothetical protein mma_2300 [Janthinobacterium sp. Marseille]
 gb|ABR91448.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 258

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 62/134 (46%), Positives = 80/134 (59%), Gaps = 9/134 (6%)

Query: 54  VKPATRAAAKPAAAAAAPAAPKAEKKVEKVAKP--EKADKPVKAEKVEKVEKVEKVEKAP 111
           VKPA   +    AA    A+ +  K  +  AKP  + A KP      + V +V       
Sbjct: 130 VKPAATKSPAKKAAPKPAASKRVTKASKPAAKPVVKPAAKPATPVLAKPVAEV------- 182

Query: 112 KAKKVKQVRDSFTMPENEYAVLAQVKKTCLKSGVEIKKSDLLRIGVSLIKNLKINELKDI 171
           K KK K VRDSFTMPE EY VL+ VKK  LK+GV +KKS+LLR GV+LIK+L + +L  +
Sbjct: 183 KGKKAKLVRDSFTMPEIEYQVLSDVKKAFLKAGVAVKKSELLRAGVALIKDLDMKKLNAV 242

Query: 172 LGSLTPLKVGRPKK 185
           +  L+PLK GRPKK
Sbjct: 243 ITGLSPLKAGRPKK 256


>ref|YP_004752420.1| hypothetical protein CFU_1765 [Collimonas fungivorans Ter331]
 gb|AEK61597.1| conserved hypothetical protein ; putative Histone H1-like protein
           HC2 (HC2 nucleoprotein) [Collimonas fungivorans Ter331]
          Length = 157

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 70/150 (46%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 38  VAKPAAPKPAAVKKPAVK--PATRAAAKPAAAAAAPAAPKAEKKVEKVAKPEKADKPVKA 95
           + KP   KP AVKKP  K  PA R +AKP A  AA  A K   K      P+       A
Sbjct: 6   IVKPVVKKPIAVKKPVAKAKPAARPSAKPVAKPAAKPAVKTVAKPLPKPLPKPLPVAKPA 65

Query: 96  EKVEKVEKVEKVEKAPKAKKVKQVRDSFTMPENEYAVLAQVKKTCLKSGVEIKKSDLLRI 155
                       +   K KK K VRDSFTMP +EY VL  VKKT LK+G+E+KKS+LLR+
Sbjct: 66  VPKPAPSIKALPDLKGKVKKAKLVRDSFTMPADEYQVLGDVKKTFLKAGLEVKKSELLRV 125

Query: 156 GVSLIKNLKINELKDILGSLTPLKVGRPKK 185
           GV+LI+ L +  LK  + SL P+K GRPKK
Sbjct: 126 GVALIRELDLANLKLAVASLPPVKAGRPKK 155


>ref|YP_001099405.1| putative histone H1-like protein HC2 [Herminiimonas arsenicoxydans]
 emb|CAL61278.1| conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 184

 Score = 53.9 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 70/161 (43%), Positives = 86/161 (53%), Gaps = 29/161 (18%)

Query: 25  VQAAAAATETKKPVAKPAAPKPAAVKKPAVKPATRAAAKPAAAAAAPAAPKAEKKVEKVA 84
           V A    T T+   A+    KPA+  KP  KP T+A  KP +A              KV 
Sbjct: 51  VDAVVKKTATETVTARKPVTKPAS--KPVAKPVTKAVTKPVSA--------------KVD 94

Query: 85  KPEKADKPVKAEKVEKVEKVEKVEKAPKAKKVKQVRDSFTMPENEYAVLAQVKKTCLKSG 144
           K  +  KP    K              K KK K VRDSFTMPE EY VL  VKK  LKSG
Sbjct: 95  KQPQVAKPAAPSK-------------EKVKKAKLVRDSFTMPETEYQVLNDVKKAFLKSG 141

Query: 145 VEIKKSDLLRIGVSLIKNLKINELKDILGSLTPLKVGRPKK 185
           V +KKS+LLR GV+LIK +K+++L  ++ +L PLK GRPKK
Sbjct: 142 VSVKKSELLRAGVALIKAMKLDQLNAVISALPPLKAGRPKK 182