BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2709.p (388 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_05967743.1| putative amino acid ABC transporter, periplas... 339 4e-91 ref|YP_004348442.1| extracellular ligand-binding receptor [Burkh... 334 1e-89 ref|YP_775394.1| extracellular ligand-binding receptor [Burkhold... 330 3e-88 ref|ZP_02910238.1| Extracellular ligand-binding receptor [Burkho... 328 7e-88 ref|YP_372707.1| branched chain amino acid ABC transporter perip... 328 8e-88 >ref|ZP_05967743.1| putative amino acid ABC transporter, periplasmic amino acid-binding protein [Enterobacter cancerogenus ATCC 35316] gb|EFC56733.1| putative amino acid ABC transporter, periplasmic amino acid-binding protein [Enterobacter cancerogenus ATCC 35316] Length = 385 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 181/376 (48%), Positives = 245/376 (65%), Gaps = 7/376 (1%) Query: 2 INALRQSLLLALALAGAGCFFASGSAVAQARTVLIGLAAPMSGPSGSTGVSLERAAQLAV 61 I+AL ++LL+ F ++G+ A + TV+IGLA P++GPS G LE AQLA+ Sbjct: 6 ISALSAAILLS-------GFASTGAWAADSETVVIGLAGPLTGPSARIGKDLENGAQLAI 58 Query: 62 DDINNSKPVIAGEPVLFKLLPQDDRADPRTGELIADYFVKSKVAAVVGHWNSGVGIPAAR 121 DDIN P I G+ V FKL +DD++DPRT +A V S VA VVGHWN+G IPAAR Sbjct: 59 DDINKQHPTIGGKAVTFKLQSEDDQSDPRTAVAVAQRLVDSGVAGVVGHWNTGTSIPAAR 118 Query: 122 IYAAAGIPHVAPAVTAPAYTQQGDASAFRIVPHDGEGARLTADYVVRELKGVNVAVIDDS 181 +Y AGI VAP T AYT+QG ++FR++ HD +G + Y V LK +AVIDD Sbjct: 119 VYHDAGIAQVAPVATGHAYTKQGFDTSFRVMGHDDDGGQFAGQYAVNTLKAKRIAVIDDR 178 Query: 182 TVFGSTYADEFVKSLTTLQGRVTGRYAVSSKTSDFNSILRSIRDSHPDVVFFAGLDAQAA 241 T FG ADEF+KSL ++ R V KT DF+++L +IR + D++FF G+D+QAA Sbjct: 179 TAFGQGLADEFIKSLDAQGVKIVDRQYVDDKTVDFSAVLTAIRSKNADLIFFGGVDSQAA 238 Query: 242 QLVQDLRRLQIRAPLVGIGGLVGPTFLKLAGAAGEGVSVVEPGLPSYKGPQWSHFEQAWK 301 L + +++L ++A L+G GG V TFL+LA GEGV +EPGLP + P FEQA++ Sbjct: 239 PLARRIKQLGMKATLMGAGGFVSQTFLQLAQKEGEGVVALEPGLPVEQMPGGKAFEQAYQ 298 Query: 302 ARYQDEIYLYAPFAYDAVRVIAAAMREADSVEPAKVTASLHRIRYKGISGTIAFDAQGNL 361 +RY I L+APFAYDA RV+ AAM +ADSV+PA +L I Y G++G IAFD +GNL Sbjct: 299 SRYHTHIELHAPFAYDATRVLVAAMEKADSVDPADYLPALRAISYSGVTGQIAFDKEGNL 358 Query: 362 RDPVFTLYRVSGGRWR 377 P FT+Y+V G+W+ Sbjct: 359 TSPSFTVYKVVDGKWQ 374 >ref|YP_004348442.1| extracellular ligand-binding receptor [Burkholderia gladioli BSR3] gb|AEA62930.1| extracellular ligand-binding receptor [Burkholderia gladioli BSR3] Length = 399 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 176/360 (48%), Positives = 236/360 (65%) Query: 24 SGSAVAQARTVLIGLAAPMSGPSGSTGVSLERAAQLAVDDINNSKPVIAGEPVLFKLLPQ 83 + A +TVLIGLAAP++GPS G L+ AQLA+DD N P I G+PV++KL+ Sbjct: 29 TAHAADAPQTVLIGLAAPLTGPSARIGKDLQNGAQLALDDANRRHPTIDGKPVVYKLVAV 88 Query: 84 DDRADPRTGELIADYFVKSKVAAVVGHWNSGVGIPAARIYAAAGIPHVAPAVTAPAYTQQ 143 DD++DPRT +A V+ V VVGHWN+G +PAAR+Y AGIP +APA T YTQQ Sbjct: 89 DDQSDPRTAVTVAQDLVEQHVIGVVGHWNTGCSVPAARVYRDAGIPEIAPASTGHQYTQQ 148 Query: 144 GDASAFRIVPHDGEGARLTADYVVRELKGVNVAVIDDSTVFGSTYADEFVKSLTTLQGRV 203 G A+AFRI+ HD G T Y V+ L +AV+DD T FGS AD+FVK + G + Sbjct: 149 GYATAFRIMGHDDTGGAYTGAYAVKTLHARRIAVLDDRTSFGSGLADQFVKGVEANGGTI 208 Query: 204 TGRYAVSSKTSDFNSILRSIRDSHPDVVFFAGLDAQAAQLVQDLRRLQIRAPLVGIGGLV 263 R V+ KT+DF+ +L +I+ PD+VFF GLDAQAA + + + +L I A L+G GG V Sbjct: 209 VDRQYVTDKTTDFSGVLTAIKSKRPDLVFFGGLDAQAAPIARRMHQLGIDATLLGAGGFV 268 Query: 264 GPTFLKLAGAAGEGVSVVEPGLPSYKGPQWSHFEQAWKARYQDEIYLYAPFAYDAVRVIA 323 TFL LAG GEGV+ +EPG P K P F+ ++ARY I L+APFAYDA + Sbjct: 269 SQTFLSLAGKDGEGVTALEPGRPLAKMPGGPAFDAQYRARYHAPIELHAPFAYDAAATLI 328 Query: 324 AAMREADSVEPAKVTASLHRIRYKGISGTIAFDAQGNLRDPVFTLYRVSGGRWRVVRSIG 383 A ++ S +PAK+ A+LH++ +G++G IAFD QGNL+DP +T+YRV GG+W VV +G Sbjct: 329 AVAEQSKSTDPAKLVAALHKVDRQGVTGRIAFDEQGNLKDPAYTIYRVQGGKWSVVDVLG 388 >ref|YP_775394.1| extracellular ligand-binding receptor [Burkholderia ambifaria AMMD] gb|ABI89060.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia ambifaria AMMD] Length = 388 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 173/357 (48%), Positives = 238/357 (66%) Query: 27 AVAQARTVLIGLAAPMSGPSGSTGVSLERAAQLAVDDINNSKPVIAGEPVLFKLLPQDDR 86 A + +T+LIGLAAP++GPS G L+ AQLA+DD N P I G+PV++KL+ DD+ Sbjct: 25 AQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAEHPSIGGKPVVYKLVAADDQ 84 Query: 87 ADPRTGELIADYFVKSKVAAVVGHWNSGVGIPAARIYAAAGIPHVAPAVTAPAYTQQGDA 146 +DPRT +A V V VVGHWN+G +PA+R+Y AGI +APA T YTQQG A Sbjct: 85 SDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIAQIAPASTGHQYTQQGYA 144 Query: 147 SAFRIVPHDGEGARLTADYVVRELKGVNVAVIDDSTVFGSTYADEFVKSLTTLQGRVTGR 206 +AFRI+ HD G T Y V+ LK +AVIDD T FG+ AD+F+K + G + R Sbjct: 145 TAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKGVQANGGTIVDR 204 Query: 207 YAVSSKTSDFNSILRSIRDSHPDVVFFAGLDAQAAQLVQDLRRLQIRAPLVGIGGLVGPT 266 V+ KT+DF+ +L +I+ D+VFF GLDAQAA + + +R+L + APL+G GG V T Sbjct: 205 QYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNAPLLGAGGFVSQT 264 Query: 267 FLKLAGAAGEGVSVVEPGLPSYKGPQWSHFEQAWKARYQDEIYLYAPFAYDAVRVIAAAM 326 FL LAG GEGV+ +EPGLP + P + F+ ++AR+ I L+APFAYDA + AA+ Sbjct: 265 FLSLAGKDGEGVTALEPGLPLDRMPGGNAFDAQYRARWHAPIELHAPFAYDAAATLIAAV 324 Query: 327 READSVEPAKVTASLHRIRYKGISGTIAFDAQGNLRDPVFTLYRVSGGRWRVVRSIG 383 ++A S +PAKV A++ I G++G +AFD QGNL+DP FT+Y+V GG+W VV +G Sbjct: 325 QKAGSTQPAKVVAAVRAIDRPGVTGRVAFDQQGNLKDPAFTIYQVRGGKWTVVDVLG 381 >ref|ZP_02910238.1| Extracellular ligand-binding receptor [Burkholderia ambifaria MEX-5] gb|EDT38625.1| Extracellular ligand-binding receptor [Burkholderia ambifaria MEX-5] Length = 388 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 171/357 (47%), Positives = 238/357 (66%) Query: 27 AVAQARTVLIGLAAPMSGPSGSTGVSLERAAQLAVDDINNSKPVIAGEPVLFKLLPQDDR 86 A + +T+LIGLAAP++GPS G L+ AQLA+DD N P I G+PV++KL+ DD+ Sbjct: 25 AQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPSIGGKPVVYKLVAADDQ 84 Query: 87 ADPRTGELIADYFVKSKVAAVVGHWNSGVGIPAARIYAAAGIPHVAPAVTAPAYTQQGDA 146 +DPRT +A V V VVGHWN+G +PA+R+Y AGI +APA T YTQQG A Sbjct: 85 SDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIAQIAPASTGHQYTQQGYA 144 Query: 147 SAFRIVPHDGEGARLTADYVVRELKGVNVAVIDDSTVFGSTYADEFVKSLTTLQGRVTGR 206 +AFRI+ HD G T Y V+ LK +AVIDD T FG+ AD+F+K + G + R Sbjct: 145 TAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKGMQANGGTIVDR 204 Query: 207 YAVSSKTSDFNSILRSIRDSHPDVVFFAGLDAQAAQLVQDLRRLQIRAPLVGIGGLVGPT 266 V+ KT+DF+ +L +I+ D+VFF GLDAQAA + + +R+L + APL+G GG V T Sbjct: 205 QYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNAPLLGAGGFVSQT 264 Query: 267 FLKLAGAAGEGVSVVEPGLPSYKGPQWSHFEQAWKARYQDEIYLYAPFAYDAVRVIAAAM 326 FL LAG GEGV+ +EPGLP + P + F+ ++AR+ I L+APFAYDA + AA Sbjct: 265 FLSLAGKDGEGVTALEPGLPLDRMPGGNAFDAQYRARWHAPIELHAPFAYDAAATLIAAT 324 Query: 327 READSVEPAKVTASLHRIRYKGISGTIAFDAQGNLRDPVFTLYRVSGGRWRVVRSIG 383 ++A + +PAKV A++ I G++G +AFD++GNL+DP FT+Y+V GG+W VV +G Sbjct: 325 QKAGTTQPAKVVAAVRAIDRPGVTGRVAFDSEGNLKDPAFTIYQVRGGKWTVVDVLG 381 >ref|YP_372707.1| branched chain amino acid ABC transporter periplasmic ligand-binding protein [Burkholderia sp. 383] gb|ABB12063.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia sp. 383] Length = 388 Score = 328 bits (842), Expect = 8e-88, Method: Composition-based stats. Identities = 177/363 (48%), Positives = 243/363 (66%), Gaps = 2/363 (0%) Query: 23 ASGSAVAQA--RTVLIGLAAPMSGPSGSTGVSLERAAQLAVDDINNSKPVIAGEPVLFKL 80 AS A AQ+ +T+LIGLAAP++GPS G L+ AQLA+DD N P I G+PV++KL Sbjct: 19 ASVPAFAQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPTIGGKPVVYKL 78 Query: 81 LPQDDRADPRTGELIADYFVKSKVAAVVGHWNSGVGIPAARIYAAAGIPHVAPAVTAPAY 140 + DD++DPRT +A V V VVGHWN+G +PA+R+Y AGIP +APA T Y Sbjct: 79 VAADDQSDPRTAVAVAQQLVDKHVIGVVGHWNTGCSVPASRVYRDAGIPQIAPASTGHQY 138 Query: 141 TQQGDASAFRIVPHDGEGARLTADYVVRELKGVNVAVIDDSTVFGSTYADEFVKSLTTLQ 200 TQQG A+AFRI+ HD G T Y V+ LK +AVIDD T FGS AD+F+K + Sbjct: 139 TQQGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGSGLADQFIKGVQANG 198 Query: 201 GRVTGRYAVSSKTSDFNSILRSIRDSHPDVVFFAGLDAQAAQLVQDLRRLQIRAPLVGIG 260 G + R V+ KT+DF+ +L +I+ D+VFF GLDAQAA + + +R+L + APL+G G Sbjct: 199 GAIVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPISRRMRQLGVNAPLLGAG 258 Query: 261 GLVGPTFLKLAGAAGEGVSVVEPGLPSYKGPQWSHFEQAWKARYQDEIYLYAPFAYDAVR 320 G V TFL LAG G+GV+ +EPGLP + P F+ ++AR++ I L+APFAYDA Sbjct: 259 GFVSQTFLSLAGKDGDGVTALEPGLPLDRMPGGKAFDTQYQARFRAPIELHAPFAYDAAA 318 Query: 321 VIAAAMREADSVEPAKVTASLHRIRYKGISGTIAFDAQGNLRDPVFTLYRVSGGRWRVVR 380 + AA ++A + +PAK+ A++ I G++G IAFDA+GNL+DP FT+Y+V GG+W VV Sbjct: 319 TLIAAAQKAGTTQPAKLVAAVRAIDRPGVTGRIAFDAEGNLKDPAFTIYQVRGGKWTVVD 378 Query: 381 SIG 383 +G Sbjct: 379 VLG 381