BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2708.p (417 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776072.1| Fe-S protein [Herbaspirillum seropedicae SmR... 395 e-108 ref|ZP_02381933.1| MOSC domain protein beta barrel domain protei... 333 5e-89 ref|ZP_04947255.1| hypothetical protein BDAG_03223 [Burkholderia... 323 3e-86 gb|EGD00033.1| uncharacterized Fe-S protein [Burkholderia sp. TJ... 317 3e-84 ref|ZP_03569599.1| mosc domain protein [Burkholderia multivorans... 314 2e-83 >ref|YP_003776072.1| Fe-S protein [Herbaspirillum seropedicae SmR1] gb|ADJ64164.1| Fe-S protein [Herbaspirillum seropedicae SmR1] Length = 280 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 206/283 (72%), Positives = 234/283 (82%), Gaps = 4/283 (1%) Query: 135 TTLSAIFFYPIKSCGALSLSRAEISPLGLALDRHWMLVDRQGQFLTQRTHPAMACITPAF 194 + LSAI YPIKSC LSL+ I PLGLALDRHWMLVDRQG+FLTQR HP MACITPAF Sbjct: 2 SILSAIHLYPIKSCAGLSLTHTPIGPLGLALDRHWMLVDRQGRFLTQRQHPEMACITPAF 61 Query: 195 EGDALVLRAPGMPALQLAAAGQDGATLAVKVWDSRVEALDQGEQAREWFSAYLQDDARLV 254 EG+ LVLRAPGMPAL L+ G+DG LAV+VW+S ++ALDQG+ A +W S YL + RLV Sbjct: 62 EGERLVLRAPGMPALSLSMQGEDGEALAVQVWNSHLDALDQGQTAAQWCSDYLGEAVRLV 121 Query: 255 RFNPAVKRACSTRWTGEHRATTQFSDGYPLLVIGQASLDDLNARLTAKGAPALPMDRFRP 314 RFNPA R CSTRWT +A TQFSDGYPLLVIGQASL+DLNARLTAKGAPAL M+RFRP Sbjct: 122 RFNPAASRPCSTRWTEGRQAYTQFSDGYPLLVIGQASLEDLNARLTAKGAPALGMERFRP 181 Query: 315 NLVIAGWEAYEEDFIDTVRLGSEDRPVQLKLVKPCARCPIPGIDQHSGQRDPQWPDEPMD 374 NLVI+G +AY+ED I T+ LG PV+L+LVKPCARCPIPGIDQ +G RD +WPDEP+D Sbjct: 182 NLVISGLDAYDEDHISTLTLG----PVELRLVKPCARCPIPGIDQRTGLRDARWPDEPLD 237 Query: 375 TLATYRANARVNGGLTFGQNAIVIGGEGGVIEVGQACEWELNF 417 TLA YRA+ RV+GGLTFGQNAIV GGEGGVIEVGQA +WE NF Sbjct: 238 TLAGYRADPRVDGGLTFGQNAIVTGGEGGVIEVGQAVQWEWNF 280 >ref|ZP_02381933.1| MOSC domain protein beta barrel domain protein [Burkholderia ubonensis Bu] Length = 288 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 165/284 (58%), Positives = 204/284 (71%), Gaps = 4/284 (1%) Query: 137 LSAIFFYPIKSCGALSLSRAEISPLGLALDRHWMLVDRQGQFLTQRTHPAMACITPAFEG 196 +SA+F YPIKSCG ++L RA + GLA DRHWM+ D G+ +TQRTHP +A + PAF+G Sbjct: 4 ISALFVYPIKSCGGIALRRALLLDTGLAYDRHWMVTDPAGEMITQRTHPRLALVQPAFDG 63 Query: 197 DALVLRAPGMPALQLAAAGQDGAT---LAVKVWDSRVEALDQGEQAREWFSAYLQDDARL 253 DALVL APGMP L+ G+ A +A VW V+A+D G WFS +L A+L Sbjct: 64 DALVLNAPGMPELRTPLDGEASAQTPKMAATVWRDTVDAIDTGAATAAWFSEFLGMPAKL 123 Query: 254 VRFNPAVKRACSTRWTGEHRATTQFSDGYPLLVIGQASLDDLNARLTAKGAPALPMDRFR 313 RF P +RAC+ +WTGE A+T+F+DGYPLLVIGQASLDDLNARL AKGAPA+PMDRFR Sbjct: 124 ARFAPDARRACNRKWTGELDASTRFADGYPLLVIGQASLDDLNARLVAKGAPAIPMDRFR 183 Query: 314 PNLVIAGWEAYEEDFIDTVRLGSEDRPVQLKLVKPCARCPIPGIDQHSGQRDPQWPDEPM 373 PNLV++G +A+EEDFI+ + D PV+L+LVK C RCP+P IDQ +G DP WP EP Sbjct: 184 PNLVVSGIDAFEEDFIEHLD-ADGDTPVRLRLVKLCTRCPVPTIDQRTGAPDPAWPHEPT 242 Query: 374 DTLATYRANARVNGGLTFGQNAIVIGGEGGVIEVGQACEWELNF 417 DTL TYRAN +G LTFG NAIV+ G G +EVGQA E E+ F Sbjct: 243 DTLQTYRANPNFDGALTFGNNAIVVRGAGRFLEVGQALEAEIGF 286 >ref|ZP_04947255.1| hypothetical protein BDAG_03223 [Burkholderia dolosa AUO158] gb|EAY70426.1| hypothetical protein BDAG_03223 [Burkholderia dolosa AUO158] Length = 288 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 158/284 (55%), Positives = 200/284 (70%), Gaps = 4/284 (1%) Query: 137 LSAIFFYPIKSCGALSLSRAEISPLGLALDRHWMLVDRQGQFLTQRTHPAMACITPAFEG 196 +S +F YPIKSC ++LSRA++ GLA DRHWML+D G LTQRTHP +A I PAF+G Sbjct: 4 ISELFVYPIKSCAGIALSRAQLLDTGLAYDRHWMLIDANGMMLTQRTHPRLALIRPAFDG 63 Query: 197 DALVLRAPGMPALQLAAAGQDGATL---AVKVWDSRVEALDQGEQAREWFSAYLQDDARL 253 DALVL APGMP ++ G + VW V+A+D G WF+A++ +L Sbjct: 64 DALVLNAPGMPEIRTPLDGDVSPATPKTSATVWRDTVDAIDTGADTAAWFTAFVGTPTKL 123 Query: 254 VRFNPAVKRACSTRWTGEHRATTQFSDGYPLLVIGQASLDDLNARLTAKGAPALPMDRFR 313 VRF P +RAC+ +WTG+ A+TQF+DGYPLLVIGQASLDDLNARL AKG PA+PM+RFR Sbjct: 124 VRFAPDARRACNRKWTGDIDASTQFADGYPLLVIGQASLDDLNARLAAKGTPAIPMNRFR 183 Query: 314 PNLVIAGWEAYEEDFIDTVRLGSEDRPVQLKLVKPCARCPIPGIDQHSGQRDPQWPDEPM 373 PN+V++ +AYEEDF++ + G PV+L+LVK C RCP+P IDQ SG +P WP EP Sbjct: 184 PNVVVSALDAYEEDFVEHLDTGGAT-PVRLRLVKLCTRCPVPTIDQASGAPNPDWPHEPT 242 Query: 374 DTLATYRANARVNGGLTFGQNAIVIGGEGGVIEVGQACEWELNF 417 DT+ TYRAN +G LTFG NAIV+ G GG +EVGQ E E+ F Sbjct: 243 DTMQTYRANPNYDGALTFGINAIVVEGAGGWLEVGQPVEAEIGF 286 >gb|EGD00033.1| uncharacterized Fe-S protein [Burkholderia sp. TJI49] Length = 290 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 160/287 (55%), Positives = 200/287 (69%), Gaps = 8/287 (2%) Query: 137 LSAIFFYPIKSCGALSLSRAEISPLGLALDRHWMLVDRQGQFLTQRTHPAMACITPAFEG 196 ++ +F YPIKSCG L+L RA++ GLA DRHWM+ D GQ +TQRTH +A + PAF+G Sbjct: 4 IAELFVYPIKSCGGLALPRAQLLDTGLAYDRHWMVTDANGQMITQRTHARLALVQPAFDG 63 Query: 197 DALVLRAPGMPALQLAAAGQDGA---TLAVKVWDSRVEALDQGEQAREWFSAYLQDDARL 253 D LVL APGMP L+ G + T+A VW VEA+D G WFS YL A+L Sbjct: 64 DTLVLNAPGMPELRTPLDGDASSATPTMAATVWRDTVEAIDTGADTAAWFSEYLGMPAKL 123 Query: 254 VRFNPAVKRACSTRWTGEHRATTQFSDGYPLLVIGQASLDDLNARLTAKGAPALPMDRFR 313 RF P +RACS +WTG+ A+T+F+DGYPLLVIGQASLDDLNARL AKGAPA+PM+RFR Sbjct: 124 ARFAPGSRRACSAKWTGDIDASTKFADGYPLLVIGQASLDDLNARLVAKGAPAIPMNRFR 183 Query: 314 PNLVIAGWEAYEEDFI---DTVRLGSEDRPVQLKLVKPCARCPIPGIDQHSGQRDPQWPD 370 PN+V+AG +AYEED++ DT G+ V+L+LVK C RCP+P IDQ +G DP WP Sbjct: 184 PNIVVAGLDAYEEDYVEHLDTDAGGAA--AVRLRLVKLCTRCPMPTIDQRTGAPDPAWPH 241 Query: 371 EPMDTLATYRANARVNGGLTFGQNAIVIGGEGGVIEVGQACEWELNF 417 EP DT+ TYRA+ + LTFG NAIV+ G G +EVGQ E E+ F Sbjct: 242 EPTDTMQTYRAHPNYDNALTFGNNAIVVHGAGAWLEVGQPLEAEIGF 288 >ref|ZP_03569599.1| mosc domain protein [Burkholderia multivorans CGD2M] ref|ZP_03576240.1| mosc domain protein [Burkholderia multivorans CGD2] gb|EEE09583.1| mosc domain protein [Burkholderia multivorans CGD2] gb|EEE15506.1| mosc domain protein [Burkholderia multivorans CGD2M] Length = 288 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 158/284 (55%), Positives = 198/284 (69%), Gaps = 4/284 (1%) Query: 137 LSAIFFYPIKSCGALSLSRAEISPLGLALDRHWMLVDRQGQFLTQRTHPAMACITPAFEG 196 ++ + YPIKSCG ++L RA++ GLA DRHWM+ D QG+ +TQRTHP +A + PAF+G Sbjct: 4 IAELHVYPIKSCGGIALPRAQLLDTGLAYDRHWMVTDAQGRMITQRTHPRLALVQPAFDG 63 Query: 197 DALVLRAPGMPALQLAAAGQDGA---TLAVKVWDSRVEALDQGEQAREWFSAYLQDDARL 253 D LVL APGM L+ G T+A VW V+A+D G WFS +L + A+L Sbjct: 64 DTLVLNAPGMRELRTPLDGDATPATPTIAATVWRDTVDAIDTGTDTSAWFSEWLGEPAKL 123 Query: 254 VRFNPAVKRACSTRWTGEHRATTQFSDGYPLLVIGQASLDDLNARLTAKGAPALPMDRFR 313 VRF +RACS +WTG+ A TQF+DGYPLLVIGQASLDDLNARL AKGAPA+PM+RFR Sbjct: 124 VRFARDARRACSAKWTGDVDAHTQFADGYPLLVIGQASLDDLNARLAAKGAPAIPMNRFR 183 Query: 314 PNLVIAGWEAYEEDFIDTVRLGSEDRPVQLKLVKPCARCPIPGIDQHSGQRDPQWPDEPM 373 PNLV++ EAYEEDF++ + R V+L+LVK C RCP+P IDQ +G DP WP EP Sbjct: 184 PNLVVSDLEAYEEDFVEHLDADGATR-VRLRLVKLCTRCPMPTIDQRTGAPDPAWPHEPT 242 Query: 374 DTLATYRANARVNGGLTFGQNAIVIGGEGGVIEVGQACEWELNF 417 DTL TYRAN +G LTFG NAIV+ G G +EVGQ + E+ F Sbjct: 243 DTLQTYRANPNYDGALTFGINAIVVEGAGAWLEVGQPLDAEIGF 286